Protein–RNA interactions for Protein: P41235

HNF4A, Hepatocyte nuclear factor 4-alpha, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HNF4AP41235 RNU6-1103P-201ENST00000384150 107 ntBASIC2.88□□□□□ -1.95
HNF4AP41235 RNU6ATAC25P-201ENST00000408798 117 ntBASIC2.88□□□□□ -1.95
HNF4AP41235 TRIM60P10Y-201ENST00000425589 751 ntBASIC2.88□□□□□ -1.95
HNF4AP41235 SKA2P1-201ENST00000425592 390 ntBASIC2.88□□□□□ -1.95
HNF4AP41235 PCDH9-AS1-201ENST00000430861 532 ntTSL 2 BASIC2.88□□□□□ -1.95
HNF4AP41235 FCF1P1-201ENST00000432690 571 ntBASIC2.88□□□□□ -1.95
HNF4AP41235 MTND3P21-201ENST00000433774 331 ntBASIC2.88□□□□□ -1.95
HNF4AP41235 MTATP6P13-201ENST00000438531 667 ntBASIC2.88□□□□□ -1.95
HNF4AP41235 LINC01162-201ENST00000447262 447 ntTSL 5 BASIC2.88□□□□□ -1.95
HNF4AP41235 AL078587.1-201ENST00000448580 542 ntTSL 5 BASIC2.88□□□□□ -1.95
HNF4AP41235 PSPHP1-201ENST00000450062 261 ntBASIC2.88□□□□□ -1.95
HNF4AP41235 ITCH-AS1-201ENST00000454205 299 ntTSL 5 BASIC2.88□□□□□ -1.95
HNF4AP41235 AC026801.1-201ENST00000497178 464 ntBASIC2.88□□□□□ -1.95
HNF4AP41235 AIG1P1-201ENST00000503376 148 ntBASIC2.88□□□□□ -1.95
HNF4AP41235 AC005920.2-201ENST00000509833 332 ntTSL 3 BASIC2.88□□□□□ -1.95
HNF4AP41235 RNA5SP341-201ENST00000516261 117 ntBASIC2.88□□□□□ -1.95
HNF4AP41235 AC103726.1-201ENST00000520785 474 ntTSL 2 BASIC2.88□□□□□ -1.95
HNF4AP41235 AC100768.1-201ENST00000525512 506 ntTSL 3 BASIC2.88□□□□□ -1.95
HNF4AP41235 PSMA2P1-201ENST00000526365 646 ntBASIC2.88□□□□□ -1.95
HNF4AP41235 AC107016.2-201ENST00000547968 190 ntBASIC2.88□□□□□ -1.95
HNF4AP41235 AC069061.2-202ENST00000580280 357 ntTSL 3 BASIC2.88□□□□□ -1.95
HNF4AP41235 AC130469.1-201ENST00000597256 388 ntTSL 5 BASIC2.88□□□□□ -1.95
HNF4AP41235 AL161756.2-201ENST00000604597 246 ntBASIC2.88□□□□□ -1.95
HNF4AP41235 AP000860.1-201ENST00000605250 559 ntBASIC2.88□□□□□ -1.95
HNF4AP41235 AC090970.3-201ENST00000612566 866 ntBASIC2.88□□□□□ -1.95
HNF4AP41235 DUSP12P1-201ENST00000612874 516 ntBASIC2.88□□□□□ -1.95
HNF4AP41235 U6atac.1-201ENST00000616025 117 ntBASIC2.88□□□□□ -1.95
HNF4AP41235 NPPA-AS1_3.1-201ENST00000617059 108 ntBASIC2.88□□□□□ -1.95
HNF4AP41235 AC006338.1-201ENST00000618453 749 ntBASIC2.88□□□□□ -1.95
HNF4AP41235 AL161782.1-201ENST00000622930 586 ntTSL 3 BASIC2.88□□□□□ -1.95
HNF4AP41235 CR381653.2-201ENST00000624041 768 ntBASIC2.88□□□□□ -1.95
HNF4AP41235 AL136313.1-201ENST00000624804 202 ntBASIC2.88□□□□□ -1.95
HNF4AP41235 PROX1-AS1-244ENST00000630355 599 ntTSL 5 BASIC2.88□□□□□ -1.95
HNF4AP41235 MIR3199-2-201ENST00000636243 86 ntBASIC2.88□□□□□ -1.95
HNF4AP41235 AC010889.1-201ENST00000566193 2666 ntBASIC2.88□□□□□ -1.95
HNF4AP41235 PCDH11Y-201ENST00000215473 4595 ntAPPRIS ALT2 TSL 1 (best) BASIC2.88□□□□□ -1.95
HNF4AP41235 HMGN5-201ENST00000358130 2126 ntAPPRIS P2 TSL 2 BASIC2.87□□□□□ -1.95
HNF4AP41235 AC010329.5-201ENST00000623497 2174 ntBASIC2.87□□□□□ -1.95
HNF4AP41235 OR5V1-217ENST00000641768 2763 ntAPPRIS P1 BASIC2.87□□□□□ -1.95
HNF4AP41235 Y_RNA.372-201ENST00000365599 102 ntBASIC2.87□□□□□ -1.95
HNF4AP41235 SNORA20.2-201ENST00000383922 131 ntBASIC2.87□□□□□ -1.95
HNF4AP41235 RNU6-1083P-201ENST00000384022 107 ntBASIC2.87□□□□□ -1.95
HNF4AP41235 SNORA54-201ENST00000384281 123 ntBASIC2.87□□□□□ -1.95
HNF4AP41235 MIR491-201ENST00000384877 84 ntBASIC2.87□□□□□ -1.95
HNF4AP41235 MTCO3P40-201ENST00000392516 676 ntBASIC2.87□□□□□ -1.95
HNF4AP41235 BCL2L11-207ENST00000405953 425 ntTSL 1 (best) BASIC2.87□□□□□ -1.95
HNF4AP41235 RNU4-55P-201ENST00000410731 137 ntBASIC2.87□□□□□ -1.95
HNF4AP41235 ZNF90P2-204ENST00000419323 1075 ntBASIC2.87□□□□□ -1.95
HNF4AP41235 AC133104.1-201ENST00000429100 218 ntBASIC2.87□□□□□ -1.95
HNF4AP41235 AL355340.1-201ENST00000433085 344 ntTSL 3 BASIC2.87□□□□□ -1.95
HNF4AP41235 AC119618.1-201ENST00000434191 222 ntBASIC2.87□□□□□ -1.95
HNF4AP41235 AL603839.2-201ENST00000437060 546 ntTSL 5 BASIC2.87□□□□□ -1.95
HNF4AP41235 UBE2V1P8-201ENST00000437166 265 ntBASIC2.87□□□□□ -1.95
HNF4AP41235 LINC01758-201ENST00000448001 458 ntTSL 3 BASIC2.87□□□□□ -1.95
HNF4AP41235 AC007879.3-202ENST00000448786 823 ntTSL 1 (best) BASIC2.87□□□□□ -1.95
HNF4AP41235 MTND1P12-201ENST00000455231 147 ntBASIC2.87□□□□□ -1.95
HNF4AP41235 AC117440.1-201ENST00000474107 571 ntBASIC2.87□□□□□ -1.95
HNF4AP41235 RPS29P2-201ENST00000479278 136 ntBASIC2.87□□□□□ -1.95
HNF4AP41235 EIF4EP3-201ENST00000498782 656 ntBASIC2.87□□□□□ -1.95
HNF4AP41235 HMGB1P29-201ENST00000505659 499 ntBASIC2.87□□□□□ -1.95
HNF4AP41235 RNU6-718P-201ENST00000516166 105 ntBASIC2.87□□□□□ -1.95
HNF4AP41235 RNU1-103P-201ENST00000516502 125 ntBASIC2.87□□□□□ -1.95
HNF4AP41235 RNA5SP471-201ENST00000516971 106 ntBASIC2.87□□□□□ -1.95
HNF4AP41235 ZNF706-202ENST00000517844 604 ntAPPRIS P1 TSL 3 BASIC2.87□□□□□ -1.95
HNF4AP41235 AC084116.3-201ENST00000519123 429 ntTSL 3 BASIC2.87□□□□□ -1.95
HNF4AP41235 LYRM2-203ENST00000520318 677 ntTSL 2 BASIC2.87□□□□□ -1.95
HNF4AP41235 AC090124.2-201ENST00000527727 563 ntTSL 4 BASIC2.87□□□□□ -1.95
HNF4AP41235 AP003718.1-201ENST00000529884 583 ntTSL 4 BASIC2.87□□□□□ -1.95
HNF4AP41235 AC133480.1-201ENST00000547563 381 ntTSL 3 BASIC2.87□□□□□ -1.95
HNF4AP41235 H3F3AP1-201ENST00000559984 334 ntBASIC2.87□□□□□ -1.95
HNF4AP41235 AC044798.1-201ENST00000565146 418 ntTSL 5 BASIC2.87□□□□□ -1.95
HNF4AP41235 AC024270.4-201ENST00000570202 421 ntTSL 3 BASIC2.87□□□□□ -1.95
HNF4AP41235 AC024619.4-201ENST00000580924 316 ntBASIC2.87□□□□□ -1.95
HNF4AP41235 AL356280.1-201ENST00000603614 379 ntBASIC2.87□□□□□ -1.95
HNF4AP41235 AL391646.1-201ENST00000603860 190 ntBASIC2.87□□□□□ -1.95
HNF4AP41235 AL627309.6-201ENST00000606857 840 ntBASIC2.87□□□□□ -1.95
HNF4AP41235 AC103710.2-201ENST00000609912 942 ntBASIC2.87□□□□□ -1.95
HNF4AP41235 AC090517.2-201ENST00000614966 680 ntBASIC2.87□□□□□ -1.95
HNF4AP41235 AC244093.3-201ENST00000615419 411 ntTSL 3 BASIC2.87□□□□□ -1.95
HNF4AP41235 uc_338.12-201ENST00000616344 181 ntBASIC2.87□□□□□ -1.95
HNF4AP41235 U4.5-201ENST00000617137 123 ntBASIC2.87□□□□□ -1.95
HNF4AP41235 GPR171-203ENST00000617554 960 ntAPPRIS P1 BASIC2.87□□□□□ -1.95
HNF4AP41235 AC007998.5-201ENST00000622938 237 ntBASIC2.87□□□□□ -1.95
HNF4AP41235 FOXP2-211ENST00000408937 6443 ntTSL 1 (best) BASIC2.87□□□□□ -1.95
HNF4AP41235 TDRD15-201ENST00000405799 6135 ntAPPRIS P1 TSL 2 BASIC2.86□□□□□ -1.95
HNF4AP41235 PRKACB-207ENST00000394838 4294 ntTSL 5 BASIC2.86□□□□□ -1.95
HNF4AP41235 HSFY1-202ENST00000309834 1038 ntAPPRIS ALT2 TSL 1 (best) BASIC2.86□□□□□ -1.95
HNF4AP41235 LINC00305-201ENST00000323355 873 ntTSL 1 (best) BASIC2.86□□□□□ -1.95
HNF4AP41235 HSFY2-202ENST00000344884 1038 ntAPPRIS ALT2 TSL 1 (best) BASIC2.86□□□□□ -1.95
HNF4AP41235 Y_RNA.159-201ENST00000363674 87 ntBASIC2.86□□□□□ -1.95
HNF4AP41235 Y_RNA.409-201ENST00000383990 98 ntBASIC2.86□□□□□ -1.95
HNF4AP41235 MIR181A1-201ENST00000385026 110 ntBASIC2.86□□□□□ -1.95
HNF4AP41235 RNU6-780P-201ENST00000391030 104 ntBASIC2.86□□□□□ -1.95
HNF4AP41235 U3.26-201ENST00000391236 204 ntBASIC2.86□□□□□ -1.95
HNF4AP41235 NDUFS5P1-201ENST00000405668 289 ntBASIC2.86□□□□□ -1.95
HNF4AP41235 SNORA11.1-201ENST00000408133 129 ntBASIC2.86□□□□□ -1.95
HNF4AP41235 NBDY-202ENST00000423617 543 ntAPPRIS P1 TSL 2 BASIC2.86□□□□□ -1.95
HNF4AP41235 ISCA1P1-201ENST00000426679 387 ntBASIC2.86□□□□□ -1.95
HNF4AP41235 MTCO2P19-201ENST00000427513 598 ntBASIC2.86□□□□□ -1.95
HNF4AP41235 RPL36AP53-201ENST00000432891 316 ntBASIC2.86□□□□□ -1.95
Retrieved 100 of 98,524 protein–RNA pairs in 135.7 ms