Protein–RNA interactions for Protein: O15347

HMGB3, High mobility group protein B3, humanhuman

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3O15347 AC012170.3-201ENST00000560159 297 ntTSL 2 BASIC1.16□□□□□ -2.22
HMGB3O15347 AP001496.1-201ENST00000579113 471 ntTSL 4 BASIC1.16□□□□□ -2.22
HMGB3O15347 AF038458.1-201ENST00000588406 262 ntBASIC1.16□□□□□ -2.22
HMGB3O15347 ST7-OT4_2.1-201ENST00000619089 172 ntBASIC1.16□□□□□ -2.22
HMGB3O15347 HIF1A-212ENST00000557538 3468 ntTSL 1 (best) BASIC1.16□□□□□ -2.22
HMGB3O15347 ZNF680P1-201ENST00000436625 1469 ntBASIC1.16□□□□□ -2.22
HMGB3O15347 LMBRD1-201ENST00000370570 2099 ntTSL 1 (best) BASIC1.16□□□□□ -2.22
HMGB3O15347 SNORD26-201ENST00000384147 75 ntBASIC1.15□□□□□ -2.23
HMGB3O15347 MIR504-201ENST00000385065 83 ntBASIC1.15□□□□□ -2.23
HMGB3O15347 TRAJ23-201ENST00000390514 63 ntAPPRIS P1 BASIC1.15□□□□□ -2.23
HMGB3O15347 SNORA11.1-201ENST00000408133 129 ntBASIC1.15□□□□□ -2.23
HMGB3O15347 RNA5SP501-201ENST00000410990 112 ntBASIC1.15□□□□□ -2.23
HMGB3O15347 AL161937.1-201ENST00000444478 425 ntTSL 3 BASIC1.15□□□□□ -2.23
HMGB3O15347 AL360091.2-201ENST00000446847 650 ntTSL 5 BASIC1.15□□□□□ -2.23
HMGB3O15347 AL157882.1-201ENST00000447148 429 ntTSL 3 BASIC1.15□□□□□ -2.23
HMGB3O15347 ITGA9-AS1-208ENST00000449586 726 ntTSL 3 BASIC1.15□□□□□ -2.23
HMGB3O15347 LINC02201-201ENST00000508992 468 ntTSL 2 BASIC1.15□□□□□ -2.23
HMGB3O15347 LINC02472-201ENST00000512268 575 ntTSL 2 BASIC1.15□□□□□ -2.23
HMGB3O15347 RNU6-667P-201ENST00000517186 102 ntBASIC1.15□□□□□ -2.23
HMGB3O15347 AC106038.1-203ENST00000522132 362 ntTSL 2 BASIC1.15□□□□□ -2.23
HMGB3O15347 CARD18-203ENST00000532895 422 ntTSL 2 BASIC1.15□□□□□ -2.23
HMGB3O15347 AK6P1-201ENST00000540219 478 ntBASIC1.15□□□□□ -2.23
HMGB3O15347 SUB1P3-201ENST00000564581 315 ntBASIC1.15□□□□□ -2.23
HMGB3O15347 AC023825.1-201ENST00000566704 1030 ntBASIC1.15□□□□□ -2.23
HMGB3O15347 AC015813.2-201ENST00000578794 711 ntAPPRIS P1 TSL 3 BASIC1.15□□□□□ -2.23
HMGB3O15347 AC008277.1-203ENST00000594921 1149 ntTSL 5 BASIC1.15□□□□□ -2.23
HMGB3O15347 BNIP3P33-201ENST00000598912 569 ntBASIC1.15□□□□□ -2.23
HMGB3O15347 ZNF667-AS1-209ENST00000601875 495 ntTSL 3 BASIC1.15□□□□□ -2.23
HMGB3O15347 AC098826.3-201ENST00000603823 466 ntBASIC1.15□□□□□ -2.23
HMGB3O15347 AC069304.2-201ENST00000605154 435 ntBASIC1.15□□□□□ -2.23
HMGB3O15347 DPY19L1-208ENST00000612226 607 ntTSL 1 (best) BASIC1.15□□□□□ -2.23
HMGB3O15347 AC005332.6-201ENST00000613178 446 ntBASIC1.15□□□□□ -2.23
HMGB3O15347 AC243773.3-201ENST00000613270 256 ntBASIC1.15□□□□□ -2.23
HMGB3O15347 AC017037.3-201ENST00000625016 472 ntBASIC1.15□□□□□ -2.23
HMGB3O15347 ATM-228ENST00000639240 498 ntTSL 5 BASIC1.15□□□□□ -2.23
HMGB3O15347 ATM-230ENST00000640388 578 ntTSL 5 BASIC1.15□□□□□ -2.23
HMGB3O15347 ZCCHC10-202ENST00000355372 2160 ntAPPRIS ALT2 TSL 2 BASIC1.15□□□□□ -2.23
HMGB3O15347 KTN1-205ENST00000395314 4618 ntAPPRIS P4 TSL 1 (best) BASIC1.14□□□□□ -2.23
HMGB3O15347 MIR150-201ENST00000385048 84 ntBASIC1.14□□□□□ -2.23
HMGB3O15347 RNU11-3P-201ENST00000391111 133 ntBASIC1.14□□□□□ -2.23
HMGB3O15347 CXADR-203ENST00000400165 603 ntTSL 1 (best) BASIC1.14□□□□□ -2.23
HMGB3O15347 AL355994.1-201ENST00000424379 260 ntBASIC1.14□□□□□ -2.23
HMGB3O15347 NAALADL2-AS2-201ENST00000424690 1038 ntTSL 5 BASIC1.14□□□□□ -2.23
HMGB3O15347 AL513185.2-201ENST00000425543 193 ntBASIC1.14□□□□□ -2.23
HMGB3O15347 DEFB130D-201ENST00000426866 237 ntBASIC1.14□□□□□ -2.23
HMGB3O15347 LINC01817-201ENST00000429317 564 ntTSL 4 BASIC1.14□□□□□ -2.23
HMGB3O15347 GPM6BP2-201ENST00000432046 144 ntBASIC1.14□□□□□ -2.23
HMGB3O15347 HMGB1P18-201ENST00000438801 619 ntBASIC1.14□□□□□ -2.23
HMGB3O15347 EHHADH-202ENST00000440662 656 ntTSL 3 BASIC1.14□□□□□ -2.23
HMGB3O15347 MTND2P20-201ENST00000440805 661 ntBASIC1.14□□□□□ -2.23
HMGB3O15347 GPM6BP1-201ENST00000446387 144 ntBASIC1.14□□□□□ -2.23
HMGB3O15347 OR6C5P-201ENST00000452388 923 ntBASIC1.14□□□□□ -2.23
HMGB3O15347 RPL7P43-201ENST00000478876 753 ntBASIC1.14□□□□□ -2.23
HMGB3O15347 AC021382.1-201ENST00000483523 359 ntBASIC1.14□□□□□ -2.23
HMGB3O15347 LINC02064-201ENST00000506492 470 ntTSL 5 BASIC1.14□□□□□ -2.23
HMGB3O15347 AC117522.2-201ENST00000510049 657 ntBASIC1.14□□□□□ -2.23
HMGB3O15347 AC063919.1-201ENST00000514281 254 ntTSL 3 BASIC1.14□□□□□ -2.23
HMGB3O15347 RNU5B-3P-201ENST00000516601 115 ntBASIC1.14□□□□□ -2.23
HMGB3O15347 ACA59.2-201ENST00000517061 156 ntBASIC1.14□□□□□ -2.23
HMGB3O15347 AC011257.1-201ENST00000519048 281 ntTSL 3 BASIC1.14□□□□□ -2.23
HMGB3O15347 PWRN1-209ENST00000568019 359 ntTSL 3 BASIC1.14□□□□□ -2.23
HMGB3O15347 AC091057.3-201ENST00000602684 733 ntBASIC1.14□□□□□ -2.23
HMGB3O15347 AC116312.1-201ENST00000606841 314 ntBASIC1.14□□□□□ -2.23
HMGB3O15347 RNU6-91P-201ENST00000607774 107 ntBASIC1.14□□□□□ -2.23
HMGB3O15347 MIR6134-201ENST00000617606 109 ntBASIC1.14□□□□□ -2.23
HMGB3O15347 AL590808.1-201ENST00000618696 141 ntBASIC1.14□□□□□ -2.23
HMGB3O15347 MIR7843-201ENST00000622274 79 ntBASIC1.14□□□□□ -2.23
HMGB3O15347 AC091965.5-201ENST00000624785 342 ntBASIC1.14□□□□□ -2.23
HMGB3O15347 SKIL-204ENST00000458537 7182 ntAPPRIS P1 TSL 1 (best) BASIC1.13□□□□□ -2.23
HMGB3O15347 ZNF29P-201ENST00000225587 168 ntBASIC1.13□□□□□ -2.23
HMGB3O15347 RNU6-97P-201ENST00000363387 104 ntBASIC1.13□□□□□ -2.23
HMGB3O15347 RNU6-114P-201ENST00000384704 105 ntBASIC1.13□□□□□ -2.23
HMGB3O15347 AL627390.1-201ENST00000396055 340 ntBASIC1.13□□□□□ -2.23
HMGB3O15347 AL021407.1-201ENST00000404531 386 ntBASIC1.13□□□□□ -2.23
HMGB3O15347 MIR1262-201ENST00000408276 93 ntBASIC1.13□□□□□ -2.23
HMGB3O15347 RNA5SP508-201ENST00000411327 119 ntBASIC1.13□□□□□ -2.23
HMGB3O15347 AC079150.1-201ENST00000413043 383 ntTSL 3 BASIC1.13□□□□□ -2.23
HMGB3O15347 AL590705.2-201ENST00000420204 281 ntTSL 5 BASIC1.13□□□□□ -2.23
HMGB3O15347 AL354695.1-201ENST00000427935 228 ntBASIC1.13□□□□□ -2.23
HMGB3O15347 RPL36AP53-201ENST00000432891 316 ntBASIC1.13□□□□□ -2.23
HMGB3O15347 AC092839.1-201ENST00000433475 536 ntTSL 4 BASIC1.13□□□□□ -2.23
HMGB3O15347 SEPT7P5-201ENST00000434048 306 ntBASIC1.13□□□□□ -2.23
HMGB3O15347 MTCO3P45-201ENST00000443036 613 ntBASIC1.13□□□□□ -2.23
HMGB3O15347 MTATP6P30-201ENST00000443540 664 ntBASIC1.13□□□□□ -2.23
HMGB3O15347 PTENP1-201ENST00000447117 1215 ntBASIC1.13□□□□□ -2.23
HMGB3O15347 ARPC3P5-201ENST00000448802 534 ntBASIC1.13□□□□□ -2.23
HMGB3O15347 AMD1P1-201ENST00000457220 922 ntBASIC1.13□□□□□ -2.23
HMGB3O15347 AC099520.1-202ENST00000503650 777 ntTSL 3 BASIC1.13□□□□□ -2.23
HMGB3O15347 snoZ278.1-201ENST00000517059 112 ntBASIC1.13□□□□□ -2.23
HMGB3O15347 AC087439.2-201ENST00000519498 552 ntTSL 3 BASIC1.13□□□□□ -2.23
HMGB3O15347 AF117829.1-204ENST00000519854 284 ntTSL 3 BASIC1.13□□□□□ -2.23
HMGB3O15347 LINC01932-201ENST00000520323 573 ntTSL 5 BASIC1.13□□□□□ -2.23
HMGB3O15347 AC135279.1-201ENST00000543493 504 ntBASIC1.13□□□□□ -2.23
HMGB3O15347 MRPL42-208ENST00000552217 920 ntAPPRIS P2 TSL 2 BASIC1.13□□□□□ -2.23
HMGB3O15347 AC009754.1-201ENST00000566282 540 ntTSL 4 BASIC1.13□□□□□ -2.23
HMGB3O15347 AL353997.4-201ENST00000586196 166 ntBASIC1.13□□□□□ -2.23
HMGB3O15347 AL670379.6-201ENST00000603753 252 ntBASIC1.13□□□□□ -2.23
HMGB3O15347 AL670379.11-201ENST00000604059 253 ntBASIC1.13□□□□□ -2.23
HMGB3O15347 AL670379.10-201ENST00000604330 253 ntBASIC1.13□□□□□ -2.23
HMGB3O15347 AC008162.1-201ENST00000604718 254 ntBASIC1.13□□□□□ -2.23
Retrieved 100 of 98,524 protein–RNA pairs in 102.6 ms