Protein–RNA interactions for Protein: A6NC98

CCDC88B, Coiled-coil domain-containing protein 88B, humanhuman

Predictions only

Length 1,476 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88BA6NC98 AC068787.1-201ENST00000623908 691 ntBASIC0.8□□□□□ -2.28
CCDC88BA6NC98 AC097372.4-201ENST00000625025 466 ntBASIC0.8□□□□□ -2.28
CCDC88BA6NC98 MIR6086-201ENST00000638065 55 ntBASIC0.8□□□□□ -2.28
CCDC88BA6NC98 MT-CYB-201ENST00000361789 1141 ntAPPRIS P1 BASIC0.79□□□□□ -2.28
CCDC88BA6NC98 Y_RNA.294-201ENST00000364916 102 ntBASIC0.79□□□□□ -2.28
CCDC88BA6NC98 RNU6-1293P-201ENST00000384077 107 ntBASIC0.79□□□□□ -2.28
CCDC88BA6NC98 RNU6-35P-201ENST00000384530 107 ntBASIC0.79□□□□□ -2.28
CCDC88BA6NC98 AC003084.1-201ENST00000427030 435 ntTSL 5 BASIC0.79□□□□□ -2.28
CCDC88BA6NC98 AL035078.1-202ENST00000531627 413 ntTSL 2 BASIC0.79□□□□□ -2.28
CCDC88BA6NC98 MIR4422-201ENST00000581938 83 ntBASIC0.79□□□□□ -2.28
CCDC88BA6NC98 CYP2C61P-201ENST00000604072 290 ntBASIC0.79□□□□□ -2.28
CCDC88BA6NC98 RNU6-156P-201ENST00000621869 107 ntBASIC0.79□□□□□ -2.28
CCDC88BA6NC98 MIR5087-201ENST00000635826 76 ntBASIC0.79□□□□□ -2.28
CCDC88BA6NC98 CD44-239ENST00000639002 528 ntTSL 1 (best) BASIC0.79□□□□□ -2.28
CCDC88BA6NC98 AC100821.1-201ENST00000523153 2479 ntBASIC0.78□□□□□ -2.28
CCDC88BA6NC98 DIRC1-201ENST00000308100 1037 ntAPPRIS P1 TSL 1 (best) BASIC0.78□□□□□ -2.28
CCDC88BA6NC98 RNU6-1155P-201ENST00000363554 107 ntBASIC0.78□□□□□ -2.28
CCDC88BA6NC98 AC000111.3-201ENST00000433478 193 ntBASIC0.78□□□□□ -2.28
CCDC88BA6NC98 LINC01073-201ENST00000441659 149 ntTSL 3 BASIC0.78□□□□□ -2.28
CCDC88BA6NC98 AL034418.1-201ENST00000448675 860 ntBASIC0.78□□□□□ -2.28
CCDC88BA6NC98 HTR2A-AS1-202ENST00000452352 384 ntTSL 2 BASIC0.78□□□□□ -2.28
CCDC88BA6NC98 AC095056.1-201ENST00000503918 425 ntTSL 3 BASIC0.78□□□□□ -2.28
CCDC88BA6NC98 AC011257.1-201ENST00000519048 281 ntTSL 3 BASIC0.78□□□□□ -2.28
CCDC88BA6NC98 MIR100HG-213ENST00000531470 560 ntTSL 4 BASIC0.78□□□□□ -2.28
CCDC88BA6NC98 LINC02442-201ENST00000537732 343 ntTSL 3 BASIC0.78□□□□□ -2.28
CCDC88BA6NC98 NIFKP6-201ENST00000598115 845 ntBASIC0.78□□□□□ -2.28
CCDC88BA6NC98 B3GNTL1P2-201ENST00000603673 288 ntBASIC0.78□□□□□ -2.28
CCDC88BA6NC98 AC106800.4-201ENST00000614905 153 ntBASIC0.78□□□□□ -2.28
CCDC88BA6NC98 U4atac.1-201ENST00000618345 95 ntBASIC0.78□□□□□ -2.28
CCDC88BA6NC98 AL133370.2-201ENST00000619934 439 ntBASIC0.78□□□□□ -2.28
CCDC88BA6NC98 AC073544.1-201ENST00000600110 1595 ntBASIC0.78□□□□□ -2.29
CCDC88BA6NC98 ZBTB41-201ENST00000367405 8478 ntAPPRIS P1 TSL 1 (best) BASIC0.78□□□□□ -2.29
CCDC88BA6NC98 LINC01967-201ENST00000356047 755 ntTSL 5 BASIC0.77□□□□□ -2.29
CCDC88BA6NC98 AC006548.1-201ENST00000427470 102 ntBASIC0.77□□□□□ -2.29
CCDC88BA6NC98 AC092573.2-201ENST00000434546 243 ntBASIC0.77□□□□□ -2.29
CCDC88BA6NC98 AC092892.1-201ENST00000496067 327 ntTSL 5 BASIC0.77□□□□□ -2.29
CCDC88BA6NC98 AC016065.2-201ENST00000514530 444 ntBASIC0.77□□□□□ -2.29
CCDC88BA6NC98 RNA5SP137-201ENST00000516833 135 ntBASIC0.77□□□□□ -2.29
CCDC88BA6NC98 LINC01495-201ENST00000532380 421 ntTSL 2 BASIC0.77□□□□□ -2.29
CCDC88BA6NC98 AC067863.3-201ENST00000624172 122 ntBASIC0.77□□□□□ -2.29
CCDC88BA6NC98 CR381572.1-201ENST00000625098 102 ntBASIC0.77□□□□□ -2.29
CCDC88BA6NC98 Y_RNA.280-201ENST00000364765 112 ntBASIC0.76□□□□□ -2.29
CCDC88BA6NC98 RNA5SP56-201ENST00000410277 118 ntBASIC0.76□□□□□ -2.29
CCDC88BA6NC98 UBE2Q2P5Y-201ENST00000413867 207 ntBASIC0.76□□□□□ -2.29
CCDC88BA6NC98 AC114737.2-201ENST00000421583 173 ntBASIC0.76□□□□□ -2.29
CCDC88BA6NC98 NAALADL2-AS2-201ENST00000424690 1038 ntTSL 5 BASIC0.76□□□□□ -2.29
CCDC88BA6NC98 UBE2Q2P4Y-201ENST00000433767 207 ntBASIC0.76□□□□□ -2.29
CCDC88BA6NC98 AP002371.1-201ENST00000463604 433 ntBASIC0.76□□□□□ -2.29
CCDC88BA6NC98 AL359273.1-202ENST00000505585 905 ntTSL 1 (best) BASIC0.76□□□□□ -2.29
CCDC88BA6NC98 AC109927.2-201ENST00000506416 303 ntBASIC0.76□□□□□ -2.29
CCDC88BA6NC98 UBL5P1-201ENST00000507979 193 ntBASIC0.76□□□□□ -2.29
CCDC88BA6NC98 RNU5F-8P-201ENST00000515941 111 ntBASIC0.76□□□□□ -2.29
CCDC88BA6NC98 SCARNA3-201ENST00000517097 143 ntBASIC0.76□□□□□ -2.29
CCDC88BA6NC98 AC025857.1-201ENST00000525252 377 ntBASIC0.76□□□□□ -2.29
CCDC88BA6NC98 AC022254.1-201ENST00000567857 235 ntBASIC0.76□□□□□ -2.29
CCDC88BA6NC98 AC083865.1-201ENST00000636634 831 ntBASIC0.76□□□□□ -2.29
CCDC88BA6NC98 TEX15-201ENST00000256246 10110 ntTSL 1 (best) BASIC0.75□□□□□ -2.29
CCDC88BA6NC98 TRDJ3-201ENST00000390476 59 ntAPPRIS P1 BASIC0.75□□□□□ -2.29
CCDC88BA6NC98 RNU6-244P-201ENST00000391028 104 ntBASIC0.75□□□□□ -2.29
CCDC88BA6NC98 RNU6-1197P-201ENST00000391183 107 ntBASIC0.75□□□□□ -2.29
CCDC88BA6NC98 AL162394.1-201ENST00000413271 419 ntTSL 2 BASIC0.75□□□□□ -2.29
CCDC88BA6NC98 CR769776.1-201ENST00000441254 787 ntBASIC0.75□□□□□ -2.29
CCDC88BA6NC98 RNU6-775P-201ENST00000459318 96 ntBASIC0.75□□□□□ -2.29
CCDC88BA6NC98 RNA5SP57-201ENST00000459463 123 ntBASIC0.75□□□□□ -2.29
CCDC88BA6NC98 UBE2Q2P9-201ENST00000490086 202 ntBASIC0.75□□□□□ -2.29
CCDC88BA6NC98 MTCO2P22-201ENST00000603246 681 ntBASIC0.75□□□□□ -2.29
CCDC88BA6NC98 AC015849.6-201ENST00000605454 474 ntBASIC0.75□□□□□ -2.29
CCDC88BA6NC98 AC018638.7-201ENST00000605836 1114 ntBASIC0.75□□□□□ -2.29
CCDC88BA6NC98 AC097717.1-249ENST00000608040 401 ntTSL 5 BASIC0.75□□□□□ -2.29
CCDC88BA6NC98 HSBP1P2-201ENST00000299671 229 ntBASIC0.74□□□□□ -2.29
CCDC88BA6NC98 RNU6-1074P-201ENST00000383995 104 ntBASIC0.74□□□□□ -2.29
CCDC88BA6NC98 AL162726.4-201ENST00000422010 673 ntTSL 5 BASIC0.74□□□□□ -2.29
CCDC88BA6NC98 RNU6-420P-201ENST00000458780 107 ntBASIC0.74□□□□□ -2.29
CCDC88BA6NC98 HMGN2P9-201ENST00000476875 229 ntBASIC0.74□□□□□ -2.29
CCDC88BA6NC98 AC114912.1-201ENST00000503394 546 ntTSL 3 BASIC0.74□□□□□ -2.29
CCDC88BA6NC98 SNORA62.5-201ENST00000516634 120 ntBASIC0.74□□□□□ -2.29
CCDC88BA6NC98 MED28P6-201ENST00000558776 231 ntBASIC0.74□□□□□ -2.29
CCDC88BA6NC98 AP001269.3-201ENST00000588718 329 ntBASIC0.74□□□□□ -2.29
CCDC88BA6NC98 AP002826.1-201ENST00000608835 315 ntBASIC0.74□□□□□ -2.29
CCDC88BA6NC98 MIR424-201ENST00000362227 98 ntBASIC0.73□□□□□ -2.29
CCDC88BA6NC98 Y_RNA.493-201ENST00000384422 102 ntBASIC0.73□□□□□ -2.29
CCDC88BA6NC98 RNA5SP63-201ENST00000391225 112 ntBASIC0.73□□□□□ -2.29
CCDC88BA6NC98 AL365184.1-201ENST00000413801 572 ntTSL 3 BASIC0.73□□□□□ -2.29
CCDC88BA6NC98 AC083875.1-201ENST00000419509 405 ntBASIC0.73□□□□□ -2.29
CCDC88BA6NC98 DPYD-AS2-201ENST00000422259 788 ntTSL 3 BASIC0.73□□□□□ -2.29
CCDC88BA6NC98 MICF-203ENST00000432679 129 ntBASIC0.73□□□□□ -2.29
CCDC88BA6NC98 AC114550.2-201ENST00000524008 397 ntTSL 3 BASIC0.73□□□□□ -2.29
CCDC88BA6NC98 LINC01584-203ENST00000567231 646 ntTSL 5 BASIC0.73□□□□□ -2.29
CCDC88BA6NC98 AL669831.4-202ENST00000590817 238 ntBASIC0.73□□□□□ -2.29
CCDC88BA6NC98 AC012676.2-201ENST00000619258 186 ntBASIC0.73□□□□□ -2.29
CCDC88BA6NC98 MIR7157-201ENST00000635801 60 ntBASIC0.73□□□□□ -2.29
CCDC88BA6NC98 GNGT1-203ENST00000429473 538 ntAPPRIS P1 TSL 1 (best) BASIC0.73□□□□□ -2.29
CCDC88BA6NC98 UBE2V2P3-201ENST00000433562 437 ntBASIC0.73□□□□□ -2.29
CCDC88BA6NC98 AL354941.1-201ENST00000438600 464 ntBASIC0.73□□□□□ -2.29
CCDC88BA6NC98 PRPS1P1-201ENST00000445305 876 ntBASIC0.73□□□□□ -2.29
CCDC88BA6NC98 RNA5SP112-201ENST00000515937 99 ntBASIC0.73□□□□□ -2.29
CCDC88BA6NC98 RNU6-322P-201ENST00000516010 103 ntBASIC0.73□□□□□ -2.29
CCDC88BA6NC98 AC107953.1-201ENST00000522216 297 ntBASIC0.73□□□□□ -2.29
CCDC88BA6NC98 AP000462.2-203ENST00000540545 715 ntTSL 5 BASIC0.73□□□□□ -2.29
CCDC88BA6NC98 LINC00557-201ENST00000563184 1279 ntBASIC0.73□□□□□ -2.29
Retrieved 100 of 98,524 protein–RNA pairs in 102.1 ms