Protein–RNA interactions for Protein: Q9JIS3

Smco4, Single-pass membrane and coiled-coil domain-containing protein 4, mousemouse

Predictions only

Length 59 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smco4Q9JIS3 Prrg4-201ENSMUST00000028593 2872 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Smco4Q9JIS3 Vti1b-201ENSMUST00000055262 1490 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Smco4Q9JIS3 Klf15-203ENSMUST00000203039 2482 ntAPPRIS P1 TSL 5 BASIC13.1□□□□□ -0.31
Smco4Q9JIS3 Haus3-201ENSMUST00000060049 2073 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Smco4Q9JIS3 Gm10501-201ENSMUST00000151136 2200 ntTSL 2 BASIC13.09□□□□□ -0.31
Smco4Q9JIS3 Cgn-203ENSMUST00000153263 2210 ntTSL 2 BASIC13.09□□□□□ -0.31
Smco4Q9JIS3 Sik1-201ENSMUST00000024839 4511 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Smco4Q9JIS3 Agk-201ENSMUST00000031977 2531 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Smco4Q9JIS3 Ier5-201ENSMUST00000055322 3276 ntAPPRIS P1 BASIC13.09□□□□□ -0.31
Smco4Q9JIS3 Atf3-201ENSMUST00000027941 1984 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Smco4Q9JIS3 Vcan-205ENSMUST00000159337 2273 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
Smco4Q9JIS3 Paip2-204ENSMUST00000115736 857 ntAPPRIS P1 TSL 3 BASIC13.09□□□□□ -0.31
Smco4Q9JIS3 Scarf1-202ENSMUST00000118243 2617 ntAPPRIS ALT2 TSL 1 (best) BASIC13.09□□□□□ -0.31
Smco4Q9JIS3 Sgpl1-202ENSMUST00000122259 4102 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Smco4Q9JIS3 Spryd3-203ENSMUST00000154032 2456 ntAPPRIS P1 TSL 5 BASIC13.09□□□□□ -0.31
Smco4Q9JIS3 Hrasls-204ENSMUST00000162747 854 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Smco4Q9JIS3 Prr3-204ENSMUST00000172900 439 ntTSL 2 BASIC13.09□□□□□ -0.31
Smco4Q9JIS3 Zbtb46-205ENSMUST00000180222 2014 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Smco4Q9JIS3 Gm26558-201ENSMUST00000180559 861 ntAPPRIS P1 BASIC13.09□□□□□ -0.31
Smco4Q9JIS3 4933436I20Rik-201ENSMUST00000189405 1434 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
Smco4Q9JIS3 Fkbp1b-201ENSMUST00000020964 976 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Smco4Q9JIS3 Gm4553-202ENSMUST00000210925 1044 ntAPPRIS P5 BASIC13.09□□□□□ -0.31
Smco4Q9JIS3 Cdc37l1-204ENSMUST00000224511 2944 ntAPPRIS ALT2 BASIC13.09□□□□□ -0.31
Smco4Q9JIS3 Golph3-201ENSMUST00000059680 2652 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Smco4Q9JIS3 Akap1-201ENSMUST00000018572 3758 ntAPPRIS P2 TSL 1 (best) BASIC13.09□□□□□ -0.31
Smco4Q9JIS3 Erbb2-201ENSMUST00000058295 5012 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Smco4Q9JIS3 Rnf114-202ENSMUST00000109214 3001 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Smco4Q9JIS3 Bag1-202ENSMUST00000108089 1336 ntAPPRIS ALT2 TSL 1 (best) BASIC13.09□□□□□ -0.31
Smco4Q9JIS3 Sept4-206ENSMUST00000122067 1303 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
Smco4Q9JIS3 Impdh1-207ENSMUST00000162099 2580 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Smco4Q9JIS3 Slc7a7-206ENSMUST00000197440 2278 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Smco4Q9JIS3 Hgfac-201ENSMUST00000030985 2135 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Smco4Q9JIS3 Ruvbl2-201ENSMUST00000107771 1834 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Smco4Q9JIS3 Trim50-201ENSMUST00000065785 1803 ntAPPRIS P2 TSL 1 (best) BASIC13.09□□□□□ -0.31
Smco4Q9JIS3 Hpse-201ENSMUST00000045617 3117 ntAPPRIS P2 TSL 1 (best) BASIC13.08□□□□□ -0.31
Smco4Q9JIS3 App-207ENSMUST00000227737 2827 ntBASIC13.08□□□□□ -0.31
Smco4Q9JIS3 Tpbg-202ENSMUST00000098500 3481 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.31
Smco4Q9JIS3 Il23a-201ENSMUST00000026449 1360 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.31
Smco4Q9JIS3 Tssk2-201ENSMUST00000055374 1387 ntAPPRIS P1 BASIC13.08□□□□□ -0.31
Smco4Q9JIS3 Shroom1-204ENSMUST00000109013 3312 ntAPPRIS P3 TSL 1 (best) BASIC13.08□□□□□ -0.31
Smco4Q9JIS3 Cbfa2t3-201ENSMUST00000006525 3161 ntAPPRIS ALT2 TSL 2 BASIC13.08□□□□□ -0.32
Smco4Q9JIS3 Ranbp3-201ENSMUST00000002445 2511 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Smco4Q9JIS3 Pitpnm1-202ENSMUST00000100022 4512 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Smco4Q9JIS3 Rassf5-203ENSMUST00000112442 3388 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
Smco4Q9JIS3 Lhx3-201ENSMUST00000028302 2223 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Smco4Q9JIS3 Ubn2-201ENSMUST00000039127 4243 ntAPPRIS ALT2 TSL 1 (best) BASIC13.08□□□□□ -0.32
Smco4Q9JIS3 Dzip1-201ENSMUST00000004055 4079 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Smco4Q9JIS3 Col3a1-201ENSMUST00000087883 5564 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Smco4Q9JIS3 Tomm6os-201ENSMUST00000155812 2944 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
Smco4Q9JIS3 CT025610.1-201ENSMUST00000224552 1786 ntBASIC13.08□□□□□ -0.32
Smco4Q9JIS3 Zscan25-201ENSMUST00000094116 1796 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Smco4Q9JIS3 Rps2-208ENSMUST00000170715 998 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Smco4Q9JIS3 Gm38205-201ENSMUST00000192243 258 ntBASIC13.08□□□□□ -0.32
Smco4Q9JIS3 Ctf1-204ENSMUST00000206506 784 ntTSL 2 BASIC13.08□□□□□ -0.32
Smco4Q9JIS3 Gsc-201ENSMUST00000021513 1268 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Smco4Q9JIS3 4933406B15Rik-201ENSMUST00000220065 1182 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
Smco4Q9JIS3 Nagpa-201ENSMUST00000023911 2143 ntAPPRIS P2 TSL 1 (best) BASIC13.08□□□□□ -0.32
Smco4Q9JIS3 Igfbp7-201ENSMUST00000046746 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC13.08□□□□□ -0.32
Smco4Q9JIS3 Rps2-201ENSMUST00000054289 1094 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Smco4Q9JIS3 Ddrgk1-201ENSMUST00000089559 1238 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Smco4Q9JIS3 1700034H15Rik-202ENSMUST00000139827 4354 ntTSL 5 BASIC13.08□□□□□ -0.32
Smco4Q9JIS3 Lrp11-201ENSMUST00000019931 3386 ntAPPRIS P2 TSL 1 (best) BASIC13.08□□□□□ -0.32
Smco4Q9JIS3 Cspp1-203ENSMUST00000118263 2162 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
Smco4Q9JIS3 Disc1-206ENSMUST00000118942 2860 ntAPPRIS ALT2 TSL 1 (best) BASIC13.08□□□□□ -0.32
Smco4Q9JIS3 Dlg4-201ENSMUST00000018700 3204 ntAPPRIS P3 TSL 1 (best) BASIC13.08□□□□□ -0.32
Smco4Q9JIS3 Ush1c-208ENSMUST00000177212 1696 ntAPPRIS ALT2 TSL 5 BASIC13.08□□□□□ -0.32
Smco4Q9JIS3 Ripk3-203ENSMUST00000178399 1865 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
Smco4Q9JIS3 Dctd-203ENSMUST00000170263 2096 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Smco4Q9JIS3 Trim39-203ENSMUST00000113706 3204 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Smco4Q9JIS3 Anks1b-204ENSMUST00000179337 2692 ntTSL 5 BASIC13.07□□□□□ -0.32
Smco4Q9JIS3 Skor1-203ENSMUST00000119146 3610 ntAPPRIS ALT2 TSL 1 (best) BASIC13.07□□□□□ -0.32
Smco4Q9JIS3 Tomm34-201ENSMUST00000018466 2302 ntAPPRIS P3 TSL 1 (best) BASIC13.07□□□□□ -0.32
Smco4Q9JIS3 Steap2-205ENSMUST00000115427 3470 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
Smco4Q9JIS3 Gm26793-201ENSMUST00000180930 2732 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
Smco4Q9JIS3 Phf7-203ENSMUST00000226565 1971 ntBASIC13.07□□□□□ -0.32
Smco4Q9JIS3 Knop1-205ENSMUST00000116280 5382 ntAPPRIS P3 TSL 5 BASIC13.07□□□□□ -0.32
Smco4Q9JIS3 Zdhhc6-207ENSMUST00000224897 2168 ntAPPRIS P1 BASIC13.07□□□□□ -0.32
Smco4Q9JIS3 Repin1-202ENSMUST00000118229 3138 ntAPPRIS ALT2 TSL 1 (best) BASIC13.07□□□□□ -0.32
Smco4Q9JIS3 Gm43399-201ENSMUST00000202546 2374 ntBASIC13.07□□□□□ -0.32
Smco4Q9JIS3 Cdkl3-209ENSMUST00000120374 2770 ntAPPRIS ALT2 TSL 5 BASIC13.07□□□□□ -0.32
Smco4Q9JIS3 Slc35c2-204ENSMUST00000109300 2008 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Smco4Q9JIS3 Loxl2-201ENSMUST00000022660 5316 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Smco4Q9JIS3 Slc44a3-201ENSMUST00000039197 2620 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Smco4Q9JIS3 Tmem200c-201ENSMUST00000178545 3213 ntAPPRIS P1 TSL 2 BASIC13.07□□□□□ -0.32
Smco4Q9JIS3 D630002J18Rik-201ENSMUST00000181854 1115 ntBASIC13.07□□□□□ -0.32
Smco4Q9JIS3 Ablim1-202ENSMUST00000099294 6232 ntAPPRIS ALT2 TSL 5 BASIC13.07□□□□□ -0.32
Smco4Q9JIS3 Pak4-202ENSMUST00000108283 2899 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Smco4Q9JIS3 Pcdh7-203ENSMUST00000191837 8785 ntAPPRIS ALT2 TSL 1 (best) BASIC13.07□□□□□ -0.32
Smco4Q9JIS3 Rasa4-201ENSMUST00000042135 2914 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Smco4Q9JIS3 Tmem198b-201ENSMUST00000051011 2335 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Smco4Q9JIS3 Atp5b-201ENSMUST00000026459 1916 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Smco4Q9JIS3 Rgs6-208ENSMUST00000186458 5588 ntAPPRIS ALT2 TSL 1 (best) BASIC13.07□□□□□ -0.32
Smco4Q9JIS3 Erich2-201ENSMUST00000100041 1749 ntAPPRIS P2 TSL 1 (best) BASIC13.07□□□□□ -0.32
Smco4Q9JIS3 Arhgef9-219ENSMUST00000199920 1976 ntAPPRIS ALT2 TSL 5 BASIC13.07□□□□□ -0.32
Smco4Q9JIS3 Etv6-202ENSMUST00000111963 5707 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
Smco4Q9JIS3 Tlr2-201ENSMUST00000029623 3014 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Smco4Q9JIS3 Etv3-202ENSMUST00000119109 5309 ntAPPRIS P2 TSL 1 (best) BASIC13.07□□□□□ -0.32
Smco4Q9JIS3 Tor3a-207ENSMUST00000188964 1750 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Smco4Q9JIS3 Efna4-201ENSMUST00000029674 1599 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Smco4Q9JIS3 Add1-203ENSMUST00000114335 4547 ntTSL 5 BASIC13.07□□□□□ -0.32
Retrieved 100 of 76,532 protein–RNA pairs in 44.5 ms