Protein–RNA interactions for Protein: Q9DC48

Cdc40, Pre-mRNA-processing factor 17, mousemouse

Known RBP Predictions only

Length 579 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdc40Q9DC48 Nisch-221ENSMUST00000171735 1763 ntTSL 1 (best) BASIC15.05■□□□□ -0
Cdc40Q9DC48 Atp5b-201ENSMUST00000026459 1916 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
Cdc40Q9DC48 Zkscan2-203ENSMUST00000128217 2218 ntTSL 1 (best) BASIC15.05■□□□□ -0
Cdc40Q9DC48 Dnaaf3-201ENSMUST00000094897 2224 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
Cdc40Q9DC48 Dtx2-204ENSMUST00000111145 2493 ntAPPRIS ALT2 TSL 1 (best) BASIC15.05■□□□□ -0
Cdc40Q9DC48 Rab35-201ENSMUST00000031492 2820 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
Cdc40Q9DC48 Ankrd29-201ENSMUST00000118525 3242 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
Cdc40Q9DC48 Cdc25a-201ENSMUST00000094324 3632 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
Cdc40Q9DC48 Cep152-201ENSMUST00000089776 5768 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
Cdc40Q9DC48 Nid1-201ENSMUST00000005532 6091 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Cdc40Q9DC48 Wipf3-204ENSMUST00000132855 4516 ntAPPRIS P4 TSL 5 BASIC15.04■□□□□ -0
Cdc40Q9DC48 Dlx1-201ENSMUST00000037119 4111 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Cdc40Q9DC48 Rftn1-201ENSMUST00000044503 4029 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Cdc40Q9DC48 Bicdl1-201ENSMUST00000055408 3026 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Cdc40Q9DC48 Ostf1-201ENSMUST00000025631 2726 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Cdc40Q9DC48 Csk-201ENSMUST00000034863 2749 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Cdc40Q9DC48 Wipf1-202ENSMUST00000102679 2039 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Cdc40Q9DC48 Uchl5-201ENSMUST00000018333 1845 ntAPPRIS ALT1 TSL 1 (best) BASIC15.04■□□□□ -0
Cdc40Q9DC48 Irf5-205ENSMUST00000167252 1693 ntAPPRIS ALT2 TSL 1 (best) BASIC15.04■□□□□ -0
Cdc40Q9DC48 Dlg5-203ENSMUST00000090398 7851 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Cdc40Q9DC48 Bnipl-201ENSMUST00000098871 1414 ntTSL 1 (best) BASIC15.04■□□□□ -0
Cdc40Q9DC48 Gm7153-201ENSMUST00000117092 455 ntBASIC15.04■□□□□ -0
Cdc40Q9DC48 Mpv17l-205ENSMUST00000143697 580 ntTSL 2 BASIC15.04■□□□□ -0
Cdc40Q9DC48 Smim1-210ENSMUST00000146054 707 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Cdc40Q9DC48 Lce1k-201ENSMUST00000179917 663 ntAPPRIS P1 TSL 2 BASIC15.04■□□□□ -0
Cdc40Q9DC48 Mthfsl-204ENSMUST00000186863 725 ntTSL 2 BASIC15.04■□□□□ -0
Cdc40Q9DC48 Mybl2-201ENSMUST00000018005 3651 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Cdc40Q9DC48 Cul1-201ENSMUST00000031697 3161 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Cdc40Q9DC48 Fignl2-202ENSMUST00000213610 4462 ntAPPRIS P1 TSL 5 BASIC15.04■□□□□ -0
Cdc40Q9DC48 Ccdc71l-201ENSMUST00000172332 4240 ntAPPRIS P1 BASIC15.04■□□□□ -0
Cdc40Q9DC48 Trim31-201ENSMUST00000078438 2257 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Cdc40Q9DC48 Osbpl1a-205ENSMUST00000119512 1947 ntTSL 1 (best) BASIC15.04■□□□□ -0
Cdc40Q9DC48 Arpc5-201ENSMUST00000077755 1914 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Cdc40Q9DC48 Plekhh3-206ENSMUST00000164474 3010 ntAPPRIS ALT2 TSL 1 (best) BASIC15.03■□□□□ -0
Cdc40Q9DC48 Lad1-201ENSMUST00000038760 2993 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Cdc40Q9DC48 Layn-201ENSMUST00000098782 1786 ntAPPRIS P2 TSL 5 BASIC15.03■□□□□ -0
Cdc40Q9DC48 Coro1a-202ENSMUST00000106364 1747 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Cdc40Q9DC48 Add1-204ENSMUST00000114338 4007 ntAPPRIS ALT2 TSL 1 (best) BASIC15.03■□□□□ -0
Cdc40Q9DC48 Kbtbd2-201ENSMUST00000114321 3868 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Cdc40Q9DC48 Abcg5-202ENSMUST00000163375 1613 ntTSL 5 BASIC15.03■□□□□ -0
Cdc40Q9DC48 Nrn1-201ENSMUST00000037623 1619 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Cdc40Q9DC48 Zpbp2-203ENSMUST00000107509 1577 ntAPPRIS ALT2 TSL 1 (best) BASIC15.03■□□□□ -0
Cdc40Q9DC48 Zfp668-201ENSMUST00000054415 5768 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Cdc40Q9DC48 Cldn6-201ENSMUST00000024699 1506 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Cdc40Q9DC48 Chrna4-201ENSMUST00000067120 4565 ntAPPRIS P2 TSL 1 (best) BASIC15.03■□□□□ -0
Cdc40Q9DC48 Heyl-201ENSMUST00000040821 4537 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Cdc40Q9DC48 Gm37166-201ENSMUST00000195473 2474 ntBASIC15.03■□□□□ -0
Cdc40Q9DC48 4932702P03Rik-201ENSMUST00000138447 1482 ntTSL 1 (best) BASIC15.03■□□□□ -0
Cdc40Q9DC48 Cryl1-201ENSMUST00000022517 1497 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Cdc40Q9DC48 Usp53-201ENSMUST00000090379 6185 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Cdc40Q9DC48 Ptpn5-201ENSMUST00000033142 3145 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Cdc40Q9DC48 Gm17112-201ENSMUST00000163194 432 ntTSL 3 BASIC15.03■□□□□ -0
Cdc40Q9DC48 E2f7-205ENSMUST00000173634 827 ntTSL 2 BASIC15.03■□□□□ -0
Cdc40Q9DC48 Snhg4-201ENSMUST00000181664 1190 ntTSL 1 (best) BASIC15.03■□□□□ -0
Cdc40Q9DC48 Sftpb-201ENSMUST00000070437 1131 ntAPPRIS ALT2 TSL 5 BASIC15.03■□□□□ -0
Cdc40Q9DC48 Pld2-201ENSMUST00000018429 3659 ntAPPRIS P3 TSL 1 (best) BASIC15.03■□□□□ -0
Cdc40Q9DC48 Phf7-203ENSMUST00000226565 1971 ntBASIC15.03■□□□□ -0
Cdc40Q9DC48 Mycn-201ENSMUST00000043396 2674 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Cdc40Q9DC48 Brd3os-202ENSMUST00000209765 1898 ntAPPRIS P1 BASIC15.03■□□□□ -0
Cdc40Q9DC48 Mef2d-203ENSMUST00000107559 1791 ntTSL 1 (best) BASIC15.03■□□□□ -0
Cdc40Q9DC48 Atf4-201ENSMUST00000109605 1724 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Cdc40Q9DC48 Iqcd-202ENSMUST00000094391 1673 ntAPPRIS P2 TSL 1 (best) BASIC15.03■□□□□ -0
Cdc40Q9DC48 Dot1l-201ENSMUST00000105336 6808 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Cdc40Q9DC48 Snx16-201ENSMUST00000029047 2288 ntAPPRIS P3 TSL 1 (best) BASIC15.03■□□□□ -0
Cdc40Q9DC48 Sox18-201ENSMUST00000054491 1620 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Cdc40Q9DC48 Zkscan6-202ENSMUST00000071465 2270 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Cdc40Q9DC48 Gm26568-201ENSMUST00000180496 1594 ntTSL 1 (best) BASIC15.02■□□□□ -0
Cdc40Q9DC48 Sema6c-214ENSMUST00000202315 2843 ntAPPRIS P3 TSL 1 (best) BASIC15.02■□□□□ -0
Cdc40Q9DC48 Pdgfa-202ENSMUST00000076095 2060 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
Cdc40Q9DC48 Rab37-202ENSMUST00000067754 2577 ntAPPRIS ALT2 TSL 1 (best) BASIC15.02■□□□□ -0
Cdc40Q9DC48 Ccdc69-201ENSMUST00000055040 1402 ntAPPRIS P2 TSL 1 (best) BASIC15.02■□□□□ -0
Cdc40Q9DC48 Tbcb-201ENSMUST00000006254 1416 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
Cdc40Q9DC48 Wdr1-201ENSMUST00000005234 3089 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
Cdc40Q9DC48 Pex5-202ENSMUST00000080557 3073 ntAPPRIS ALT1 TSL 1 (best) BASIC15.02■□□□□ -0
Cdc40Q9DC48 Secisbp2-202ENSMUST00000110044 1915 ntTSL 2 BASIC15.02■□□□□ -0
Cdc40Q9DC48 Kcnc1-201ENSMUST00000025202 7760 ntTSL 1 (best) BASIC15.02■□□□□ -0
Cdc40Q9DC48 Rerg-204ENSMUST00000149100 635 ntTSL 1 (best) BASIC15.02■□□□□ -0
Cdc40Q9DC48 0610025J13Rik-203ENSMUST00000180374 713 ntTSL 5 BASIC15.02■□□□□ -0
Cdc40Q9DC48 Celrr-203ENSMUST00000185678 937 ntTSL 1 (best) BASIC15.02■□□□□ -0
Cdc40Q9DC48 Umpk-ps-201ENSMUST00000211897 827 ntBASIC15.02■□□□□ -0
Cdc40Q9DC48 Tomm22-201ENSMUST00000023062 1031 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
Cdc40Q9DC48 Ephx4-201ENSMUST00000049146 1279 ntAPPRIS P1 TSL 2 BASIC15.02■□□□□ -0
Cdc40Q9DC48 Rhot2-201ENSMUST00000043897 3189 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
Cdc40Q9DC48 Exoc8-201ENSMUST00000098312 4598 ntAPPRIS P1 BASIC15.02□□□□□ -0.01
Cdc40Q9DC48 Flvcr1-201ENSMUST00000085635 4040 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
Cdc40Q9DC48 Ap1m1-201ENSMUST00000003117 2084 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
Cdc40Q9DC48 Evx1-201ENSMUST00000031787 2877 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
Cdc40Q9DC48 Clcn3-203ENSMUST00000093490 5518 ntAPPRIS ALT1 TSL 1 (best) BASIC15.02□□□□□ -0.01
Cdc40Q9DC48 Gm9821-201ENSMUST00000178895 1953 ntAPPRIS P1 BASIC15.02□□□□□ -0.01
Cdc40Q9DC48 Ndufs2-202ENSMUST00000111318 1545 ntTSL 5 BASIC15.02□□□□□ -0.01
Cdc40Q9DC48 Rab27b-202ENSMUST00000117692 2842 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
Cdc40Q9DC48 Slc11a1-201ENSMUST00000027368 2315 ntAPPRIS P2 TSL 1 (best) BASIC15.01□□□□□ -0.01
Cdc40Q9DC48 Gm26627-201ENSMUST00000181540 1487 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
Cdc40Q9DC48 Gfra2-202ENSMUST00000227633 1480 ntBASIC15.01□□□□□ -0.01
Cdc40Q9DC48 Wdr55-201ENSMUST00000049323 1498 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Cdc40Q9DC48 Ado-201ENSMUST00000075686 4445 ntAPPRIS P1 BASIC15.01□□□□□ -0.01
Cdc40Q9DC48 Wasf1-202ENSMUST00000105509 2719 ntAPPRIS P1 TSL 5 BASIC15.01□□□□□ -0.01
Cdc40Q9DC48 A130010J15Rik-201ENSMUST00000110831 2257 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Cdc40Q9DC48 Acbd3-201ENSMUST00000027780 3471 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Cdc40Q9DC48 Rcc2-201ENSMUST00000038893 3767 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Retrieved 100 of 76,532 protein–RNA pairs in 41.7 ms