Protein–RNA interactions for Protein: Q8R370

Ushbp1, Usher syndrome type-1C protein-binding protein 1, mousemouse

Predictions only

Length 680 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ushbp1Q8R370 Gramd3-201ENSMUST00000070166 2605 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Ushbp1Q8R370 Hira-202ENSMUST00000120532 2063 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
Ushbp1Q8R370 Med7-209ENSMUST00000170928 2390 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Ushbp1Q8R370 Rasip1-201ENSMUST00000057927 3202 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Ushbp1Q8R370 Bpifb3-201ENSMUST00000088950 1821 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Ushbp1Q8R370 Btn1a1-202ENSMUST00000110434 1077 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
Ushbp1Q8R370 Snhg4-201ENSMUST00000181664 1190 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
Ushbp1Q8R370 Gm36967-201ENSMUST00000193814 266 ntBASIC18.15■□□□□ 0.5
Ushbp1Q8R370 Gm43514-201ENSMUST00000198852 424 ntBASIC18.15■□□□□ 0.5
Ushbp1Q8R370 AC156576.2-201ENSMUST00000222752 503 ntTSL 5 BASIC18.15■□□□□ 0.5
Ushbp1Q8R370 Mtcl1-201ENSMUST00000086693 7221 ntAPPRIS P3 TSL 1 (best) BASIC18.15■□□□□ 0.5
Ushbp1Q8R370 Haus4-201ENSMUST00000022784 1587 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Ushbp1Q8R370 Gm13327-201ENSMUST00000133391 2741 ntTSL 5 BASIC18.15■□□□□ 0.5
Ushbp1Q8R370 Fam219b-202ENSMUST00000114200 3017 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Ushbp1Q8R370 Ocel1-201ENSMUST00000002469 1611 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Ushbp1Q8R370 Chrna2-202ENSMUST00000206455 1933 ntAPPRIS P1 TSL 5 BASIC18.15■□□□□ 0.5
Ushbp1Q8R370 Myo5a-214ENSMUST00000155282 6372 ntAPPRIS P5 TSL 5 BASIC18.15■□□□□ 0.5
Ushbp1Q8R370 Cdh24-201ENSMUST00000067784 3489 ntAPPRIS P1 TSL 5 BASIC18.15■□□□□ 0.5
Ushbp1Q8R370 Otub1-202ENSMUST00000123594 1728 ntTSL 5 BASIC18.15■□□□□ 0.5
Ushbp1Q8R370 Itgb4-205ENSMUST00000106461 6208 ntAPPRIS ALT2 TSL 5 BASIC18.14■□□□□ 0.5
Ushbp1Q8R370 Hebp2-203ENSMUST00000214548 2083 ntTSL 1 (best) BASIC18.14■□□□□ 0.5
Ushbp1Q8R370 Snx9-201ENSMUST00000002436 2411 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
Ushbp1Q8R370 Plaa-201ENSMUST00000107107 2784 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
Ushbp1Q8R370 Tox2-201ENSMUST00000099110 2166 ntAPPRIS ALT2 TSL 5 BASIC18.14■□□□□ 0.49
Ushbp1Q8R370 Cpd-201ENSMUST00000021201 7946 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Ushbp1Q8R370 Kcnq2-204ENSMUST00000103047 2899 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
Ushbp1Q8R370 Wscd1-203ENSMUST00000108511 2866 ntAPPRIS P1 TSL 5 BASIC18.14■□□□□ 0.49
Ushbp1Q8R370 Large1-204ENSMUST00000212459 4746 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Ushbp1Q8R370 Mtx2-201ENSMUST00000028511 2950 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Ushbp1Q8R370 Rgl1-202ENSMUST00000111857 3037 ntTSL 5 BASIC18.14■□□□□ 0.49
Ushbp1Q8R370 Dnm2-204ENSMUST00000165766 3063 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
Ushbp1Q8R370 4930515G01Rik-201ENSMUST00000173208 1247 ntBASIC18.14■□□□□ 0.49
Ushbp1Q8R370 Lce1k-201ENSMUST00000179917 663 ntAPPRIS P1 TSL 2 BASIC18.14■□□□□ 0.49
Ushbp1Q8R370 Cd70-201ENSMUST00000019633 842 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Ushbp1Q8R370 Nudt21-204ENSMUST00000212981 1184 ntTSL 3 BASIC18.14■□□□□ 0.49
Ushbp1Q8R370 Gm5867-201ENSMUST00000063197 592 ntBASIC18.14■□□□□ 0.49
Ushbp1Q8R370 Prima1-201ENSMUST00000074416 909 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Ushbp1Q8R370 Mepce-201ENSMUST00000031740 3128 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Ushbp1Q8R370 Mydgf-201ENSMUST00000019723 1710 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Ushbp1Q8R370 Dock3-201ENSMUST00000044532 9063 ntAPPRIS P1 TSL 2 BASIC18.14■□□□□ 0.49
Ushbp1Q8R370 Hexb-201ENSMUST00000022169 1905 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Ushbp1Q8R370 Chaf1b-201ENSMUST00000023666 1922 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Ushbp1Q8R370 Dmgdh-201ENSMUST00000048001 2992 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Ushbp1Q8R370 Kat2a-202ENSMUST00000103118 3046 ntAPPRIS P4 TSL 1 (best) BASIC18.13■□□□□ 0.49
Ushbp1Q8R370 Casd1-201ENSMUST00000015333 3961 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Ushbp1Q8R370 Pde8b-202ENSMUST00000067082 2598 ntAPPRIS ALT2 TSL 5 BASIC18.13■□□□□ 0.49
Ushbp1Q8R370 Mef2d-201ENSMUST00000001455 5401 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
Ushbp1Q8R370 Slc25a39-201ENSMUST00000018821 1685 ntAPPRIS P2 TSL 1 (best) BASIC18.13■□□□□ 0.49
Ushbp1Q8R370 Ankrd13b-201ENSMUST00000037593 3105 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
Ushbp1Q8R370 Ano8-204ENSMUST00000213382 3785 ntAPPRIS ALT2 TSL 5 BASIC18.13■□□□□ 0.49
Ushbp1Q8R370 Tuba8-201ENSMUST00000032233 2263 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Ushbp1Q8R370 Tsacc-202ENSMUST00000107556 584 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Ushbp1Q8R370 Kxd1-202ENSMUST00000117580 696 ntTSL 5 BASIC18.13■□□□□ 0.49
Ushbp1Q8R370 Fgf20-202ENSMUST00000118639 587 ntTSL 3 BASIC18.13■□□□□ 0.49
Ushbp1Q8R370 Gm14641-201ENSMUST00000136486 452 ntTSL 3 BASIC18.13■□□□□ 0.49
Ushbp1Q8R370 Rerg-204ENSMUST00000149100 635 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
Ushbp1Q8R370 Gm26644-201ENSMUST00000181365 958 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
Ushbp1Q8R370 Gm28659-201ENSMUST00000188013 759 ntBASIC18.13■□□□□ 0.49
Ushbp1Q8R370 Gm6443-201ENSMUST00000203599 874 ntBASIC18.13■□□□□ 0.49
Ushbp1Q8R370 AC164629.2-201ENSMUST00000217916 270 ntBASIC18.13■□□□□ 0.49
Ushbp1Q8R370 Pnmt-201ENSMUST00000041301 1154 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Ushbp1Q8R370 Stam-202ENSMUST00000102960 5000 ntAPPRIS P2 TSL 1 (best) BASIC18.13■□□□□ 0.49
Ushbp1Q8R370 Acbd6-201ENSMUST00000035560 5592 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Ushbp1Q8R370 Prr14-201ENSMUST00000033095 2402 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Ushbp1Q8R370 Pgap3-202ENSMUST00000090827 2419 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Ushbp1Q8R370 Enah-202ENSMUST00000111024 3572 ntAPPRIS ALT2 TSL 5 BASIC18.13■□□□□ 0.49
Ushbp1Q8R370 Cdkn1a-201ENSMUST00000023829 1910 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Ushbp1Q8R370 Ccdc69-201ENSMUST00000055040 1402 ntAPPRIS P2 TSL 1 (best) BASIC18.13■□□□□ 0.49
Ushbp1Q8R370 Crocc-203ENSMUST00000102491 6582 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Ushbp1Q8R370 Aaed1-202ENSMUST00000220895 2858 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
Ushbp1Q8R370 Rnpep-202ENSMUST00000077340 2288 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Ushbp1Q8R370 Rab11fip4-201ENSMUST00000017783 7156 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Ushbp1Q8R370 Ctu1-201ENSMUST00000038332 2475 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Ushbp1Q8R370 Apoa5-202ENSMUST00000121598 2515 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Ushbp1Q8R370 Ube3c-201ENSMUST00000049453 5048 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Ushbp1Q8R370 Akp-ps1-202ENSMUST00000212812 1959 ntTSL 5 BASIC18.12■□□□□ 0.49
Ushbp1Q8R370 Rnf141-201ENSMUST00000106682 1101 ntAPPRIS P1 TSL 3 BASIC18.12■□□□□ 0.49
Ushbp1Q8R370 Cldn7-204ENSMUST00000108597 913 ntAPPRIS P1 TSL 2 BASIC18.12■□□□□ 0.49
Ushbp1Q8R370 Nnat-202ENSMUST00000109526 1213 ntAPPRIS P4 TSL 1 (best) BASIC18.12■□□□□ 0.49
Ushbp1Q8R370 Psma3-204ENSMUST00000160864 859 ntTSL 5 BASIC18.12■□□□□ 0.49
Ushbp1Q8R370 Bex3-204ENSMUST00000178632 933 ntAPPRIS P3 TSL 2 BASIC18.12■□□□□ 0.49
Ushbp1Q8R370 Gm5864-201ENSMUST00000202263 970 ntBASIC18.12■□□□□ 0.49
Ushbp1Q8R370 Gm35154-202ENSMUST00000217008 1093 ntTSL 5 BASIC18.12■□□□□ 0.49
Ushbp1Q8R370 F420014N23Rik-202ENSMUST00000219079 659 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
Ushbp1Q8R370 Mrps18a-201ENSMUST00000024763 884 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Ushbp1Q8R370 Birc2-201ENSMUST00000054878 378 ntBASIC18.12■□□□□ 0.49
Ushbp1Q8R370 Klhl31-201ENSMUST00000057781 6494 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Ushbp1Q8R370 Ccnyl1-202ENSMUST00000114077 3281 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
Ushbp1Q8R370 Synpo-206ENSMUST00000130360 5159 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
Ushbp1Q8R370 Mrm2-201ENSMUST00000031536 1443 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Ushbp1Q8R370 9530068E07Rik-201ENSMUST00000036952 2467 ntAPPRIS P2 TSL 1 (best) BASIC18.12■□□□□ 0.49
Ushbp1Q8R370 Abcg5-202ENSMUST00000163375 1613 ntTSL 5 BASIC18.12■□□□□ 0.49
Ushbp1Q8R370 Fam221a-201ENSMUST00000060561 2730 ntAPPRIS P3 TSL 1 (best) BASIC18.12■□□□□ 0.49
Ushbp1Q8R370 Cd82-205ENSMUST00000116457 1683 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Ushbp1Q8R370 Mir22hg-202ENSMUST00000149940 1752 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
Ushbp1Q8R370 Luc7l2-213ENSMUST00000163047 3141 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
Ushbp1Q8R370 Gal3st1-201ENSMUST00000063004 1879 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Ushbp1Q8R370 Epm2a-201ENSMUST00000069106 3287 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Ushbp1Q8R370 Gm26825-201ENSMUST00000181751 2026 ntTSL 5 BASIC18.11■□□□□ 0.49
Ushbp1Q8R370 Prdm12-201ENSMUST00000113470 2471 ntAPPRIS P1 TSL 5 BASIC18.11■□□□□ 0.49
Retrieved 100 of 76,532 protein–RNA pairs in 24.9 ms