Protein–RNA interactions for Protein: Q3UH68

Limch1, LIM and calponin homology domains-containing protein 1, mousemouse

Predictions only

Length 1,057 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Limch1Q3UH68 Emc8-201ENSMUST00000034277 4942 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
Limch1Q3UH68 Prdm12-201ENSMUST00000113470 2471 ntAPPRIS P1 TSL 5 BASIC19.07■□□□□ 0.64
Limch1Q3UH68 Kifc3-212ENSMUST00000213004 2453 ntAPPRIS ALT2 TSL 1 (best) BASIC19.07■□□□□ 0.64
Limch1Q3UH68 Mpv17l-205ENSMUST00000143697 580 ntTSL 2 BASIC19.07■□□□□ 0.64
Limch1Q3UH68 Gm15890-201ENSMUST00000161024 770 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
Limch1Q3UH68 Gm5091-201ENSMUST00000181658 1179 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
Limch1Q3UH68 Gm29707-201ENSMUST00000196325 491 ntBASIC19.07■□□□□ 0.64
Limch1Q3UH68 Nudt21-204ENSMUST00000212981 1184 ntTSL 3 BASIC19.07■□□□□ 0.64
Limch1Q3UH68 Timm8a2-201ENSMUST00000045976 913 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
Limch1Q3UH68 Thsd7a-202ENSMUST00000119581 5678 ntAPPRIS P2 TSL 5 BASIC19.07■□□□□ 0.64
Limch1Q3UH68 Anapc5-201ENSMUST00000086216 2760 ntAPPRIS P3 TSL 1 (best) BASIC19.07■□□□□ 0.64
Limch1Q3UH68 Dmgdh-201ENSMUST00000048001 2992 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
Limch1Q3UH68 Tekt1-202ENSMUST00000108502 1403 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
Limch1Q3UH68 Hira-202ENSMUST00000120532 2063 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
Limch1Q3UH68 4833445I07Rik-201ENSMUST00000193193 1642 ntBASIC19.07■□□□□ 0.64
Limch1Q3UH68 Slc9a6-202ENSMUST00000114784 4449 ntTSL 5 BASIC19.07■□□□□ 0.64
Limch1Q3UH68 Ruvbl2-201ENSMUST00000107771 1834 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
Limch1Q3UH68 Crem-228ENSMUST00000150235 2662 ntAPPRIS P2 TSL 5 BASIC19.07■□□□□ 0.64
Limch1Q3UH68 Mier2-203ENSMUST00000165028 2676 ntAPPRIS ALT2 TSL 1 (best) BASIC19.07■□□□□ 0.64
Limch1Q3UH68 Pgap3-202ENSMUST00000090827 2419 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
Limch1Q3UH68 Rexo1-201ENSMUST00000057910 5250 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
Limch1Q3UH68 Mta1-203ENSMUST00000109723 2790 ntAPPRIS ALT2 TSL 5 BASIC19.06■□□□□ 0.64
Limch1Q3UH68 Mta1-204ENSMUST00000109726 2775 ntAPPRIS P3 TSL 1 (best) BASIC19.06■□□□□ 0.64
Limch1Q3UH68 Mta1-205ENSMUST00000109727 2789 ntAPPRIS ALT2 TSL 1 (best) BASIC19.06■□□□□ 0.64
Limch1Q3UH68 Mtx2-201ENSMUST00000028511 2950 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
Limch1Q3UH68 Ube2j2-213ENSMUST00000166489 3339 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
Limch1Q3UH68 Smad3-201ENSMUST00000034973 5090 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
Limch1Q3UH68 Dcaf17-203ENSMUST00000112159 2490 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
Limch1Q3UH68 Fam46b-201ENSMUST00000051676 2287 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
Limch1Q3UH68 Fam76a-202ENSMUST00000097856 1863 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
Limch1Q3UH68 Zfp524-203ENSMUST00000209030 1128 ntAPPRIS P1 TSL 5 BASIC19.06■□□□□ 0.64
Limch1Q3UH68 Gm45328-201ENSMUST00000210942 917 ntBASIC19.06■□□□□ 0.64
Limch1Q3UH68 Snrnp35-201ENSMUST00000031349 1115 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
Limch1Q3UH68 Odf3b-201ENSMUST00000049968 1040 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
Limch1Q3UH68 Ptprs-201ENSMUST00000067538 6855 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
Limch1Q3UH68 Ubp1-202ENSMUST00000084885 3850 ntAPPRIS P4 TSL 5 BASIC19.06■□□□□ 0.64
Limch1Q3UH68 Mfsd4b3-201ENSMUST00000095749 1787 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
Limch1Q3UH68 Acap3-201ENSMUST00000079031 4301 ntTSL 5 BASIC19.06■□□□□ 0.64
Limch1Q3UH68 Xiap-203ENSMUST00000115094 6542 ntAPPRIS P1 TSL 5 BASIC19.05■□□□□ 0.64
Limch1Q3UH68 Sik3-204ENSMUST00000126865 6287 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
Limch1Q3UH68 Spg21-202ENSMUST00000213957 1302 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
Limch1Q3UH68 Rnf186-201ENSMUST00000116094 1249 ntAPPRIS P1 BASIC19.05■□□□□ 0.64
Limch1Q3UH68 Rasl2-9-201ENSMUST00000147835 1013 ntAPPRIS P1 BASIC19.05■□□□□ 0.64
Limch1Q3UH68 Tex261-201ENSMUST00000014892 2984 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
Limch1Q3UH68 BC049762-201ENSMUST00000054226 760 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
Limch1Q3UH68 2810410L24Rik-202ENSMUST00000155681 2615 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
Limch1Q3UH68 Neil3-201ENSMUST00000047768 2253 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
Limch1Q3UH68 4921536K21Rik-201ENSMUST00000020712 2590 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
Limch1Q3UH68 Fam221a-201ENSMUST00000060561 2730 ntAPPRIS P3 TSL 1 (best) BASIC19.05■□□□□ 0.64
Limch1Q3UH68 Ppp2r5e-201ENSMUST00000021447 4810 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
Limch1Q3UH68 Ager-201ENSMUST00000015596 1370 ntAPPRIS P3 TSL 1 (best) BASIC19.05■□□□□ 0.64
Limch1Q3UH68 Inhba-202ENSMUST00000164993 1529 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
Limch1Q3UH68 Gm43072-201ENSMUST00000200283 1671 ntBASIC19.05■□□□□ 0.64
Limch1Q3UH68 Bpifb3-201ENSMUST00000088950 1821 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
Limch1Q3UH68 Col17a1-201ENSMUST00000026045 5588 ntAPPRIS ALT2 TSL 1 (best) BASIC19.04■□□□□ 0.64
Limch1Q3UH68 Tuba8-201ENSMUST00000032233 2263 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
Limch1Q3UH68 Col18a1-202ENSMUST00000081654 5063 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
Limch1Q3UH68 Sgsm2-202ENSMUST00000081799 4873 ntAPPRIS ALT2 TSL 5 BASIC19.04■□□□□ 0.64
Limch1Q3UH68 Gnas-202ENSMUST00000087871 3903 ntAPPRIS P4 TSL 1 (best) BASIC19.04■□□□□ 0.64
Limch1Q3UH68 Nkx2-1-201ENSMUST00000001536 2809 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
Limch1Q3UH68 Ranbp9-201ENSMUST00000144326 3371 ntAPPRIS P2 TSL 5 BASIC19.04■□□□□ 0.64
Limch1Q3UH68 Mff-211ENSMUST00000161648 1715 ntTSL 5 BASIC19.04■□□□□ 0.64
Limch1Q3UH68 Mydgf-201ENSMUST00000019723 1710 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
Limch1Q3UH68 D030044L04Rik-201ENSMUST00000204220 1291 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
Limch1Q3UH68 Polr2f-201ENSMUST00000040077 543 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
Limch1Q3UH68 Rln3-201ENSMUST00000061923 634 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
Limch1Q3UH68 Gal3st1-201ENSMUST00000063004 1879 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
Limch1Q3UH68 Rsph6a-202ENSMUST00000076887 1580 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
Limch1Q3UH68 Gldc-201ENSMUST00000025778 3754 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
Limch1Q3UH68 Ush1c-208ENSMUST00000177212 1696 ntAPPRIS ALT2 TSL 5 BASIC19.04■□□□□ 0.64
Limch1Q3UH68 Hspb6-201ENSMUST00000044048 1363 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
Limch1Q3UH68 Pde8b-208ENSMUST00000162292 4235 ntAPPRIS P2 TSL 1 (best) BASIC19.04■□□□□ 0.64
Limch1Q3UH68 Srrm2-209ENSMUST00000190686 8864 ntAPPRIS P1 TSL 5 BASIC19.04■□□□□ 0.64
Limch1Q3UH68 Lrp8-201ENSMUST00000030356 4555 ntAPPRIS P5 TSL 5 BASIC19.03■□□□□ 0.64
Limch1Q3UH68 Tox2-201ENSMUST00000099110 2166 ntAPPRIS ALT2 TSL 5 BASIC19.03■□□□□ 0.64
Limch1Q3UH68 Gm1043-204ENSMUST00000207866 4296 ntAPPRIS P1 TSL 5 BASIC19.03■□□□□ 0.64
Limch1Q3UH68 Fam159b-201ENSMUST00000043061 1310 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Limch1Q3UH68 Akp-ps1-202ENSMUST00000212812 1959 ntTSL 5 BASIC19.03■□□□□ 0.64
Limch1Q3UH68 Pym1-202ENSMUST00000163377 1158 ntAPPRIS P4 TSL 1 (best) BASIC19.03■□□□□ 0.64
Limch1Q3UH68 Jagn1-202ENSMUST00000204254 1147 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
Limch1Q3UH68 AC133598.3-202ENSMUST00000224219 531 ntBASIC19.03■□□□□ 0.64
Limch1Q3UH68 Lce1a2-201ENSMUST00000029530 715 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Limch1Q3UH68 Hebp2-203ENSMUST00000214548 2083 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
Limch1Q3UH68 Slain1-201ENSMUST00000069443 2863 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Limch1Q3UH68 Rabl6-201ENSMUST00000058137 3230 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Limch1Q3UH68 Lrfn1-202ENSMUST00000108288 3060 ntAPPRIS ALT2 TSL 1 (best) BASIC19.03■□□□□ 0.64
Limch1Q3UH68 Rgp1-203ENSMUST00000117140 1635 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
Limch1Q3UH68 Rnpep-202ENSMUST00000077340 2288 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Limch1Q3UH68 Xrcc1-205ENSMUST00000205573 2528 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Limch1Q3UH68 Tprn-201ENSMUST00000114336 2787 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Limch1Q3UH68 AC069562.2-201ENSMUST00000224644 2146 ntBASIC19.03■□□□□ 0.64
Limch1Q3UH68 Il6st-206ENSMUST00000183886 3004 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
Limch1Q3UH68 Neu1-201ENSMUST00000007253 2474 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
Limch1Q3UH68 Podnl1-201ENSMUST00000093380 2090 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
Limch1Q3UH68 Chaf1b-201ENSMUST00000023666 1922 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
Limch1Q3UH68 Iqcd-202ENSMUST00000094391 1673 ntAPPRIS P2 TSL 1 (best) BASIC19.02■□□□□ 0.64
Limch1Q3UH68 Ank1-203ENSMUST00000110688 7206 ntAPPRIS ALT2 TSL 1 (best) BASIC19.02■□□□□ 0.64
Limch1Q3UH68 Urah-202ENSMUST00000106050 719 ntAPPRIS ALT2 TSL 2 BASIC19.02■□□□□ 0.64
Limch1Q3UH68 Gm14964-202ENSMUST00000149574 716 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
Limch1Q3UH68 Gm19935-201ENSMUST00000209208 979 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
Retrieved 100 of 76,532 protein–RNA pairs in 21.4 ms