Protein–RNA interactions for Protein: P97436

Nkx3-1, Homeobox protein Nkx-3.1, mousemouse

Predictions only

Length 237 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nkx3-1P97436 Vsig10l-204ENSMUST00000203769 2473 ntAPPRIS P2 TSL 1 (best) BASIC14□□□□□ -0.17
Nkx3-1P97436 Acss2-201ENSMUST00000029135 2931 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Nkx3-1P97436 Tbxas1-201ENSMUST00000003017 1990 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Nkx3-1P97436 Prtg-201ENSMUST00000055535 9148 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Nkx3-1P97436 Ankra2-203ENSMUST00000123924 2328 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
Nkx3-1P97436 Fiz1-208ENSMUST00000208944 2306 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Nkx3-1P97436 Gm32996-201ENSMUST00000199828 1447 ntBASIC13.99□□□□□ -0.17
Nkx3-1P97436 Tgfb1i1-205ENSMUST00000165667 1812 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
Nkx3-1P97436 Gfy-201ENSMUST00000179443 1849 ntAPPRIS P1 TSL 5 BASIC13.99□□□□□ -0.17
Nkx3-1P97436 Sgsm2-202ENSMUST00000081799 4873 ntAPPRIS ALT2 TSL 5 BASIC13.99□□□□□ -0.17
Nkx3-1P97436 Atf7-209ENSMUST00000184485 2523 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Nkx3-1P97436 Fosl1-201ENSMUST00000025850 1707 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Nkx3-1P97436 Abhd10-201ENSMUST00000066983 2848 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Nkx3-1P97436 Zmynd19-201ENSMUST00000028350 3903 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Nkx3-1P97436 Gm13418-201ENSMUST00000119097 944 ntBASIC13.99□□□□□ -0.17
Nkx3-1P97436 Mras-202ENSMUST00000119472 1190 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Nkx3-1P97436 Plpp7-202ENSMUST00000140762 634 ntTSL 3 BASIC13.99□□□□□ -0.17
Nkx3-1P97436 Ccl27a-217ENSMUST00000155240 343 ntTSL 2 BASIC13.99□□□□□ -0.17
Nkx3-1P97436 Gm44264-201ENSMUST00000203049 742 ntTSL 3 BASIC13.99□□□□□ -0.17
Nkx3-1P97436 Abhd18-206ENSMUST00000203650 797 ntTSL 5 BASIC13.99□□□□□ -0.17
Nkx3-1P97436 Gm26646-202ENSMUST00000205705 439 ntTSL 5 BASIC13.99□□□□□ -0.17
Nkx3-1P97436 Vamp8-201ENSMUST00000059983 820 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Nkx3-1P97436 Wnk1-202ENSMUST00000060043 10575 ntAPPRIS P3 TSL 1 (best) BASIC13.99□□□□□ -0.17
Nkx3-1P97436 Grk3-203ENSMUST00000197776 1570 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
Nkx3-1P97436 Ints8-202ENSMUST00000108318 3169 ntTSL 5 BASIC13.99□□□□□ -0.17
Nkx3-1P97436 Hand1-203ENSMUST00000160392 1806 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Nkx3-1P97436 Chmp2b-201ENSMUST00000004965 1838 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Nkx3-1P97436 2810039B14Rik-201ENSMUST00000183928 1459 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
Nkx3-1P97436 Tmem131l-201ENSMUST00000052342 4815 ntAPPRIS ALT2 TSL 5 BASIC13.98□□□□□ -0.17
Nkx3-1P97436 Flot1-209ENSMUST00000174080 1383 ntTSL 5 BASIC13.98□□□□□ -0.17
Nkx3-1P97436 Gm42417-201ENSMUST00000191849 2256 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Nkx3-1P97436 Gna11-201ENSMUST00000043604 3414 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Nkx3-1P97436 Gm43338-201ENSMUST00000198617 2223 ntBASIC13.98□□□□□ -0.17
Nkx3-1P97436 Aspscr1-204ENSMUST00000106159 1615 ntTSL 5 BASIC13.98□□□□□ -0.17
Nkx3-1P97436 Kptn-201ENSMUST00000006178 1630 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Nkx3-1P97436 Gtf3c4-204ENSMUST00000171404 7127 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
Nkx3-1P97436 Evx2-201ENSMUST00000001867 4191 ntAPPRIS ALT2 TSL 1 (best) BASIC13.98□□□□□ -0.17
Nkx3-1P97436 Olfr1564-201ENSMUST00000112162 1091 ntAPPRIS P2 BASIC13.98□□□□□ -0.17
Nkx3-1P97436 Chchd7-205ENSMUST00000120732 711 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
Nkx3-1P97436 Ubl5-204ENSMUST00000160682 489 ntAPPRIS P1 TSL 5 BASIC13.98□□□□□ -0.17
Nkx3-1P97436 Gm3764-206ENSMUST00000181356 1088 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
Nkx3-1P97436 Gm4535-201ENSMUST00000182274 558 ntBASIC13.98□□□□□ -0.17
Nkx3-1P97436 Msh3-205ENSMUST00000187424 666 ntTSL 2 BASIC13.98□□□□□ -0.17
Nkx3-1P97436 Il3ra-205ENSMUST00000224877 1128 ntAPPRIS ALT2 BASIC13.98□□□□□ -0.17
Nkx3-1P97436 Izumo1r-201ENSMUST00000034409 1291 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Nkx3-1P97436 Rangrf-201ENSMUST00000038644 820 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Nkx3-1P97436 Sf3b6-201ENSMUST00000046207 1180 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Nkx3-1P97436 Gm10355-201ENSMUST00000097146 517 ntBASIC13.98□□□□□ -0.17
Nkx3-1P97436 Apbb1-214ENSMUST00000189378 2878 ntAPPRIS ALT1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Nkx3-1P97436 Mettl27-204ENSMUST00000111219 1790 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Nkx3-1P97436 Fxyd6-201ENSMUST00000085939 1788 ntAPPRIS P2 TSL 1 (best) BASIC13.98□□□□□ -0.17
Nkx3-1P97436 Eif4enif1-203ENSMUST00000110049 3614 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Nkx3-1P97436 Klc1-202ENSMUST00000118471 2272 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
Nkx3-1P97436 Wt1-205ENSMUST00000143043 3090 ntAPPRIS ALT2 TSL 1 (best) BASIC13.98□□□□□ -0.17
Nkx3-1P97436 Ppme1-201ENSMUST00000032963 2772 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Nkx3-1P97436 Phtf1-203ENSMUST00000090685 3006 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
Nkx3-1P97436 Gm43294-201ENSMUST00000202850 2490 ntBASIC13.98□□□□□ -0.17
Nkx3-1P97436 Tmed9-201ENSMUST00000109905 1420 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Nkx3-1P97436 Chrm4-201ENSMUST00000045537 1440 ntAPPRIS P1 BASIC13.98□□□□□ -0.17
Nkx3-1P97436 Kank3-201ENSMUST00000048560 2641 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
Nkx3-1P97436 Prdm6-201ENSMUST00000091900 2601 ntAPPRIS P2 TSL 1 (best) BASIC13.97□□□□□ -0.17
Nkx3-1P97436 Fosl2-201ENSMUST00000031017 6537 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
Nkx3-1P97436 Disp3-201ENSMUST00000047720 5282 ntAPPRIS P1 TSL 5 BASIC13.97□□□□□ -0.17
Nkx3-1P97436 Relb-201ENSMUST00000049912 2200 ntAPPRIS ALT2 TSL 1 (best) BASIC13.97□□□□□ -0.17
Nkx3-1P97436 Synm-205ENSMUST00000208815 2697 ntAPPRIS ALT2 TSL 5 BASIC13.97□□□□□ -0.17
Nkx3-1P97436 Gm25990-201ENSMUST00000102440 86 ntBASIC13.97□□□□□ -0.17
Nkx3-1P97436 Gm26695-201ENSMUST00000180920 1251 ntTSL 5 BASIC13.97□□□□□ -0.17
Nkx3-1P97436 Gm27217-201ENSMUST00000183438 882 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
Nkx3-1P97436 Gm5364-201ENSMUST00000216789 889 ntBASIC13.97□□□□□ -0.17
Nkx3-1P97436 Lrr1-203ENSMUST00000222520 767 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
Nkx3-1P97436 1700037H04Rik-201ENSMUST00000028800 832 ntAPPRIS ALT1 TSL 1 (best) BASIC13.97□□□□□ -0.17
Nkx3-1P97436 Chmp2a-201ENSMUST00000005711 949 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
Nkx3-1P97436 Gm16863-201ENSMUST00000181476 2431 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
Nkx3-1P97436 Vac14-201ENSMUST00000034190 3069 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
Nkx3-1P97436 Hexb-201ENSMUST00000022169 1905 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
Nkx3-1P97436 Miga1-205ENSMUST00000199397 2842 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
Nkx3-1P97436 Nrxn1-206ENSMUST00000160800 5683 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
Nkx3-1P97436 Cep68-204ENSMUST00000162811 2788 ntAPPRIS ALT2 TSL 1 (best) BASIC13.97□□□□□ -0.17
Nkx3-1P97436 Arhgef16-201ENSMUST00000030898 2860 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
Nkx3-1P97436 Prdm11-201ENSMUST00000111272 3012 ntAPPRIS P1 TSL 5 BASIC13.96□□□□□ -0.17
Nkx3-1P97436 Pgap2-203ENSMUST00000120119 1979 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
Nkx3-1P97436 Nmt2-203ENSMUST00000102989 2162 ntAPPRIS P1 TSL 5 BASIC13.96□□□□□ -0.17
Nkx3-1P97436 Xxylt1-201ENSMUST00000055389 2987 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
Nkx3-1P97436 Kdf1-201ENSMUST00000042919 1708 ntAPPRIS P2 TSL 1 (best) BASIC13.96□□□□□ -0.17
Nkx3-1P97436 Bcor-203ENSMUST00000115512 6887 ntAPPRIS ALT2 TSL 1 (best) BASIC13.96□□□□□ -0.17
Nkx3-1P97436 Ppm1b-202ENSMUST00000112304 3262 ntAPPRIS P3 TSL 1 (best) BASIC13.96□□□□□ -0.17
Nkx3-1P97436 Mapk1ip1-203ENSMUST00000119664 1883 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
Nkx3-1P97436 Yipf2-204ENSMUST00000213809 1883 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
Nkx3-1P97436 Gm13283-201ENSMUST00000191112 1463 ntAPPRIS P1 BASIC13.96□□□□□ -0.17
Nkx3-1P97436 Ttyh1-217ENSMUST00000206869 1491 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
Nkx3-1P97436 Nap1l1-201ENSMUST00000065917 1486 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
Nkx3-1P97436 1700008O03Rik-201ENSMUST00000107933 913 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
Nkx3-1P97436 Gm12480-201ENSMUST00000129576 774 ntTSL 3 BASIC13.96□□□□□ -0.17
Nkx3-1P97436 1700039E22Rik-201ENSMUST00000174082 770 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
Nkx3-1P97436 Mir5126-201ENSMUST00000175513 77 ntBASIC13.96□□□□□ -0.17
Nkx3-1P97436 Gm8000-201ENSMUST00000188378 592 ntBASIC13.96□□□□□ -0.17
Nkx3-1P97436 Rpsa-ps1-201ENSMUST00000191040 886 ntBASIC13.96□□□□□ -0.17
Nkx3-1P97436 Dnmt3a-ps1-201ENSMUST00000192011 1271 ntBASIC13.96□□□□□ -0.17
Nkx3-1P97436 1300002E11Rik-207ENSMUST00000211443 767 ntTSL 5 BASIC13.96□□□□□ -0.17
Nkx3-1P97436 Gm40513-201ENSMUST00000217258 411 ntTSL 3 BASIC13.96□□□□□ -0.17
Retrieved 100 of 76,532 protein–RNA pairs in 50 ms