Protein–RNA interactions for Protein: P53784

Sox3, Transcription factor SOX-3, mousemouse

Predictions only

Length 375 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sox3P53784 Lca5l-202ENSMUST00000113804 3162 ntAPPRIS ALT2 TSL 1 (best) BASIC15.5■□□□□ 0.07
Sox3P53784 Usp49-201ENSMUST00000024779 8252 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Sox3P53784 Gm11620-201ENSMUST00000118770 1845 ntBASIC15.5■□□□□ 0.07
Sox3P53784 Dnajb2-208ENSMUST00000188346 1823 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Sox3P53784 Phtf1-202ENSMUST00000063717 3327 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Sox3P53784 Mier2-203ENSMUST00000165028 2676 ntAPPRIS ALT2 TSL 1 (best) BASIC15.5■□□□□ 0.07
Sox3P53784 Cd302-202ENSMUST00000074606 1354 ntAPPRIS ALT2 TSL 1 (best) BASIC15.49■□□□□ 0.07
Sox3P53784 Tmem116-203ENSMUST00000094357 1366 ntAPPRIS ALT2 TSL 5 BASIC15.49■□□□□ 0.07
Sox3P53784 Slbp-203ENSMUST00000101354 1578 ntAPPRIS ALT2 TSL 1 (best) BASIC15.49■□□□□ 0.07
Sox3P53784 Zfp219-212ENSMUST00000228580 2812 ntAPPRIS ALT2 BASIC15.49■□□□□ 0.07
Sox3P53784 Mef2d-203ENSMUST00000107559 1791 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
Sox3P53784 Fcgrt-201ENSMUST00000003512 1770 ntAPPRIS P2 TSL 1 (best) BASIC15.49■□□□□ 0.07
Sox3P53784 Btbd1-201ENSMUST00000026093 3001 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Sox3P53784 Tsc22d2-203ENSMUST00000199164 4659 ntAPPRIS ALT2 TSL 1 (best) BASIC15.49■□□□□ 0.07
Sox3P53784 9530018F02Rik-201ENSMUST00000219513 2599 ntBASIC15.49■□□□□ 0.07
Sox3P53784 Aim2-204ENSMUST00000166137 2079 ntAPPRIS P1 TSL 5 BASIC15.49■□□□□ 0.07
Sox3P53784 Fam126a-202ENSMUST00000101513 1679 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
Sox3P53784 Tbc1d12-201ENSMUST00000037302 4209 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Sox3P53784 Tmem33-206ENSMUST00000162543 664 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
Sox3P53784 AC159093.1-201ENSMUST00000227779 380 ntBASIC15.49■□□□□ 0.07
Sox3P53784 Rhoc-201ENSMUST00000002303 1202 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Sox3P53784 Slc25a43-201ENSMUST00000047655 1111 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Sox3P53784 Olfr571-201ENSMUST00000061738 969 ntAPPRIS P1 BASIC15.49■□□□□ 0.07
Sox3P53784 Sftpb-201ENSMUST00000070437 1131 ntAPPRIS ALT2 TSL 5 BASIC15.49■□□□□ 0.07
Sox3P53784 Fbxl3-206ENSMUST00000145693 3352 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Sox3P53784 Fcho1-209ENSMUST00000146100 3188 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Sox3P53784 Aida-206ENSMUST00000193625 1810 ntTSL 3 BASIC15.49■□□□□ 0.07
Sox3P53784 Col11a2-202ENSMUST00000114252 5620 ntAPPRIS ALT2 TSL 5 BASIC15.49■□□□□ 0.07
Sox3P53784 Wapl-201ENSMUST00000048263 6351 ntAPPRIS P3 TSL 1 (best) BASIC15.49■□□□□ 0.07
Sox3P53784 Fgfr2-215ENSMUST00000122054 3323 ntAPPRIS P4 TSL 1 (best) BASIC15.49■□□□□ 0.07
Sox3P53784 Cachd1-202ENSMUST00000097955 4277 ntAPPRIS ALT2 TSL 1 (best) BASIC15.49■□□□□ 0.07
Sox3P53784 Gm43272-201ENSMUST00000200599 1584 ntBASIC15.49■□□□□ 0.07
Sox3P53784 AC069562.2-201ENSMUST00000224644 2146 ntBASIC15.49■□□□□ 0.07
Sox3P53784 Rhd-201ENSMUST00000030627 1514 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
Sox3P53784 Ermp1-203ENSMUST00000159692 7058 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
Sox3P53784 Ankrd63-201ENSMUST00000104937 4861 ntAPPRIS P1 BASIC15.48■□□□□ 0.07
Sox3P53784 Spi1-201ENSMUST00000002180 2034 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
Sox3P53784 Glmn-201ENSMUST00000078021 2015 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
Sox3P53784 Cactin-201ENSMUST00000050867 2715 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
Sox3P53784 Nr1h2-204ENSMUST00000107912 1839 ntAPPRIS P3 TSL 1 (best) BASIC15.48■□□□□ 0.07
Sox3P53784 Gpr161-202ENSMUST00000178700 1827 ntAPPRIS ALT2 TSL 1 (best) BASIC15.48■□□□□ 0.07
Sox3P53784 Snx3-202ENSMUST00000105499 1057 ntTSL 5 BASIC15.48■□□□□ 0.07
Sox3P53784 9530052E02Rik-201ENSMUST00000180750 949 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
Sox3P53784 Gm27702-201ENSMUST00000184512 56 ntBASIC15.48■□□□□ 0.07
Sox3P53784 Gm28411-202ENSMUST00000191318 464 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
Sox3P53784 Hikeshi-207ENSMUST00000207309 835 ntTSL 5 BASIC15.48■□□□□ 0.07
Sox3P53784 Pagr1a-202ENSMUST00000200948 1430 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
Sox3P53784 Gm42742-205ENSMUST00000202798 1412 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
Sox3P53784 Pou2f2-202ENSMUST00000108413 1599 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
Sox3P53784 Hmces-202ENSMUST00000113606 1572 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
Sox3P53784 Klf5-201ENSMUST00000005279 3352 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
Sox3P53784 Uts2r-201ENSMUST00000039044 1703 ntAPPRIS P1 BASIC15.48■□□□□ 0.07
Sox3P53784 Seh1l-201ENSMUST00000025421 3516 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
Sox3P53784 Nox4-202ENSMUST00000068829 1861 ntAPPRIS ALT2 TSL 1 (best) BASIC15.48■□□□□ 0.07
Sox3P53784 1700066B19Rik-201ENSMUST00000097617 2504 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
Sox3P53784 Tspyl2-201ENSMUST00000044509 2696 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
Sox3P53784 Wnt10b-207ENSMUST00000228594 1510 ntAPPRIS P1 BASIC15.48■□□□□ 0.07
Sox3P53784 Psip1-201ENSMUST00000030207 3251 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
Sox3P53784 Zfp318-201ENSMUST00000113481 7850 ntAPPRIS P4 TSL 5 BASIC15.47■□□□□ 0.07
Sox3P53784 Ptprn-201ENSMUST00000027404 3554 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
Sox3P53784 Ifnar1-202ENSMUST00000117748 2771 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
Sox3P53784 Ptprs-201ENSMUST00000067538 6855 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
Sox3P53784 Zcchc17-202ENSMUST00000134159 2113 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
Sox3P53784 Dtx2-201ENSMUST00000005072 2562 ntAPPRIS P3 TSL 1 (best) BASIC15.47■□□□□ 0.07
Sox3P53784 Slc25a3-206ENSMUST00000170810 1341 ntAPPRIS ALT2 TSL 5 BASIC15.47■□□□□ 0.07
Sox3P53784 Soga3-201ENSMUST00000092629 4105 ntAPPRIS P1 TSL 5 BASIC15.47■□□□□ 0.07
Sox3P53784 Cryl1-201ENSMUST00000022517 1497 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
Sox3P53784 Itsn1-203ENSMUST00000095909 6103 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
Sox3P53784 Sdhb-201ENSMUST00000010007 1142 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
Sox3P53784 Prdm12-201ENSMUST00000113470 2471 ntAPPRIS P1 TSL 5 BASIC15.47■□□□□ 0.07
Sox3P53784 Krtcap3-208ENSMUST00000201937 889 ntAPPRIS P1 TSL 5 BASIC15.47■□□□□ 0.07
Sox3P53784 AC153556.1-201ENSMUST00000215135 794 ntTSL 5 BASIC15.47■□□□□ 0.07
Sox3P53784 Lrrc26-201ENSMUST00000028337 1190 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
Sox3P53784 Atp6v0b-201ENSMUST00000036380 1000 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
Sox3P53784 Nadk-203ENSMUST00000105613 3152 ntAPPRIS P2 TSL 1 (best) BASIC15.47■□□□□ 0.07
Sox3P53784 Camk2n1-201ENSMUST00000050918 4444 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
Sox3P53784 Ube2f-204ENSMUST00000178627 1363 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
Sox3P53784 Klhl40-201ENSMUST00000098272 2370 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
Sox3P53784 Chn1-203ENSMUST00000112024 4050 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
Sox3P53784 Chn1-210ENSMUST00000180045 4050 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
Sox3P53784 Gsk3b-201ENSMUST00000023507 8303 ntAPPRIS P3 TSL 1 (best) BASIC15.47■□□□□ 0.07
Sox3P53784 Wrb-201ENSMUST00000023913 2495 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
Sox3P53784 Gnb2-203ENSMUST00000111023 1471 ntTSL 5 BASIC15.46■□□□□ 0.07
Sox3P53784 Ddx51-201ENSMUST00000031478 4846 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
Sox3P53784 Stambpl1-201ENSMUST00000054956 2024 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
Sox3P53784 Gm36858-201ENSMUST00000194501 2391 ntBASIC15.46■□□□□ 0.07
Sox3P53784 1110004F10Rik-203ENSMUST00000106608 927 ntTSL 3 BASIC15.46■□□□□ 0.07
Sox3P53784 Gm13431-203ENSMUST00000147012 388 ntTSL 2 BASIC15.46■□□□□ 0.07
Sox3P53784 Dpf3-205ENSMUST00000177801 1092 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
Sox3P53784 Tecr-201ENSMUST00000019382 1158 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
Sox3P53784 Dcdc2c-201ENSMUST00000020963 1041 ntTSL 5 BASIC15.46■□□□□ 0.07
Sox3P53784 Rbpms-202ENSMUST00000033995 1039 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
Sox3P53784 Tnp2-201ENSMUST00000051297 549 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
Sox3P53784 Cebpzos-201ENSMUST00000063817 753 ntAPPRIS P1 TSL 2 BASIC15.46■□□□□ 0.07
Sox3P53784 Flot1-209ENSMUST00000174080 1383 ntTSL 5 BASIC15.46■□□□□ 0.07
Sox3P53784 Ptprd-206ENSMUST00000107289 9899 ntAPPRIS P1 TSL 5 BASIC15.46■□□□□ 0.07
Sox3P53784 Hif3a-201ENSMUST00000037762 2206 ntAPPRIS P3 TSL 1 (best) BASIC15.45■□□□□ 0.06
Sox3P53784 Large2-215ENSMUST00000176810 2477 ntAPPRIS ALT2 TSL 5 BASIC15.45■□□□□ 0.06
Sox3P53784 Scin-201ENSMUST00000002640 2995 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
Sox3P53784 Scrt1-202ENSMUST00000164703 3478 ntAPPRIS P1 TSL 2 BASIC15.45■□□□□ 0.06
Retrieved 100 of 76,532 protein–RNA pairs in 49 ms