Protein–RNA interactions for Protein: O88609

Lmx1b, LIM homeobox transcription factor 1-beta, mousemouse

Predictions only

Length 395 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lmx1bO88609 Cbr2-201ENSMUST00000026148 1110 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Lmx1bO88609 Tesc-201ENSMUST00000031304 1031 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Lmx1bO88609 Cklf-201ENSMUST00000034342 667 ntAPPRIS P4 TSL 1 (best) BASIC14.67□□□□□ -0.06
Lmx1bO88609 Olfr571-201ENSMUST00000061738 969 ntAPPRIS P1 BASIC14.67□□□□□ -0.06
Lmx1bO88609 Rhog-201ENSMUST00000098230 1269 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Lmx1bO88609 Anks1-202ENSMUST00000088027 6781 ntAPPRIS ALT2 TSL 1 (best) BASIC14.67□□□□□ -0.06
Lmx1bO88609 Ermp1-203ENSMUST00000159692 7058 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Lmx1bO88609 Sh2b3-201ENSMUST00000040308 2530 ntAPPRIS P3 TSL 1 (best) BASIC14.67□□□□□ -0.06
Lmx1bO88609 Gm26568-201ENSMUST00000180496 1594 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
Lmx1bO88609 Mef2d-203ENSMUST00000107559 1791 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
Lmx1bO88609 Bicc1-203ENSMUST00000143791 5431 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Lmx1bO88609 Tlk1-201ENSMUST00000038584 4280 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Lmx1bO88609 Irak1-205ENSMUST00000114353 1896 ntAPPRIS ALT2 TSL 5 BASIC14.67□□□□□ -0.06
Lmx1bO88609 Luc7l2-213ENSMUST00000163047 3141 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
Lmx1bO88609 Ankrd29-201ENSMUST00000118525 3242 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Lmx1bO88609 Slc46a1-201ENSMUST00000001126 1978 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Lmx1bO88609 Grk6-202ENSMUST00000099482 2169 ntAPPRIS P3 TSL 1 (best) BASIC14.67□□□□□ -0.06
Lmx1bO88609 Akt2-214ENSMUST00000167435 2865 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Lmx1bO88609 Mgat1-201ENSMUST00000081794 2976 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Lmx1bO88609 Nadk-203ENSMUST00000105613 3152 ntAPPRIS P2 TSL 1 (best) BASIC14.67□□□□□ -0.06
Lmx1bO88609 Ruvbl2-201ENSMUST00000107771 1834 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Lmx1bO88609 Nosip-201ENSMUST00000003513 1814 ntAPPRIS P3 TSL 1 (best) BASIC14.66□□□□□ -0.06
Lmx1bO88609 St8sia5-201ENSMUST00000075290 1841 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
Lmx1bO88609 Map2k5-201ENSMUST00000034920 2310 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Lmx1bO88609 Fiz1-201ENSMUST00000077385 2546 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Lmx1bO88609 Pnpt1-201ENSMUST00000020756 2707 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Lmx1bO88609 Sppl3-201ENSMUST00000031530 3204 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Lmx1bO88609 Trim28-201ENSMUST00000005705 3245 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Lmx1bO88609 Lhfpl4-201ENSMUST00000162280 4762 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Lmx1bO88609 Stradb-201ENSMUST00000027185 2960 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Lmx1bO88609 Med7-209ENSMUST00000170928 2390 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Lmx1bO88609 Klc1-202ENSMUST00000118471 2272 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
Lmx1bO88609 Bambi-201ENSMUST00000025075 5040 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Lmx1bO88609 Usp49-201ENSMUST00000024779 8252 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Lmx1bO88609 Efemp2-204ENSMUST00000165485 1557 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Lmx1bO88609 Gdpd5-201ENSMUST00000037528 4611 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Lmx1bO88609 Gm15889-201ENSMUST00000159142 1083 ntTSL 3 BASIC14.66□□□□□ -0.06
Lmx1bO88609 Syne4-208ENSMUST00000176304 1006 ntAPPRIS ALT2 TSL 5 BASIC14.66□□□□□ -0.06
Lmx1bO88609 Gm5864-201ENSMUST00000202263 970 ntBASIC14.66□□□□□ -0.06
Lmx1bO88609 AC153556.1-201ENSMUST00000215135 794 ntTSL 5 BASIC14.66□□□□□ -0.06
Lmx1bO88609 D830030K20Rik-204ENSMUST00000225885 1142 ntBASIC14.66□□□□□ -0.06
Lmx1bO88609 Mgarp-201ENSMUST00000038154 1232 ntAPPRIS P2 TSL 1 (best) BASIC14.66□□□□□ -0.06
Lmx1bO88609 Apaf1-208ENSMUST00000162618 5151 ntAPPRIS ALT2 TSL 1 (best) BASIC14.66□□□□□ -0.06
Lmx1bO88609 Chtf8-206ENSMUST00000177068 2931 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Lmx1bO88609 Gpr150-201ENSMUST00000056130 2146 ntAPPRIS P1 BASIC14.66□□□□□ -0.06
Lmx1bO88609 Lcmt2-201ENSMUST00000099486 2047 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
Lmx1bO88609 Otub1-202ENSMUST00000123594 1728 ntTSL 5 BASIC14.66□□□□□ -0.06
Lmx1bO88609 Gm4425-201ENSMUST00000172838 2857 ntTSL 2 BASIC14.66□□□□□ -0.06
Lmx1bO88609 Mta1-203ENSMUST00000109723 2790 ntAPPRIS ALT2 TSL 5 BASIC14.66□□□□□ -0.06
Lmx1bO88609 Mta1-204ENSMUST00000109726 2775 ntAPPRIS P3 TSL 1 (best) BASIC14.66□□□□□ -0.06
Lmx1bO88609 Mta1-205ENSMUST00000109727 2789 ntAPPRIS ALT2 TSL 1 (best) BASIC14.66□□□□□ -0.06
Lmx1bO88609 Map1s-201ENSMUST00000019405 3314 ntAPPRIS P2 TSL 1 (best) BASIC14.66□□□□□ -0.06
Lmx1bO88609 Nek2-201ENSMUST00000027931 3227 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Lmx1bO88609 Slc25a3-206ENSMUST00000170810 1341 ntAPPRIS ALT2 TSL 5 BASIC14.66□□□□□ -0.06
Lmx1bO88609 Chrd-202ENSMUST00000115423 2417 ntTSL 2 BASIC14.65□□□□□ -0.06
Lmx1bO88609 Dgkz-202ENSMUST00000099709 3512 ntAPPRIS ALT2 TSL 5 BASIC14.65□□□□□ -0.06
Lmx1bO88609 Ppm1d-201ENSMUST00000020835 2899 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
Lmx1bO88609 Plcl2-201ENSMUST00000043938 4050 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
Lmx1bO88609 Ivns1abp-203ENSMUST00000111887 2783 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
Lmx1bO88609 Paip2-201ENSMUST00000041314 1475 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
Lmx1bO88609 Vps72-201ENSMUST00000009102 1456 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
Lmx1bO88609 Itpripl2-201ENSMUST00000178344 6865 ntAPPRIS P1 BASIC14.65□□□□□ -0.06
Lmx1bO88609 Ctu1-201ENSMUST00000038332 2475 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
Lmx1bO88609 Spata6-201ENSMUST00000038868 2466 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
Lmx1bO88609 Gm5421-201ENSMUST00000181698 2354 ntBASIC14.65□□□□□ -0.06
Lmx1bO88609 Pdcl3-201ENSMUST00000027247 3914 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
Lmx1bO88609 2410004I01Rik-201ENSMUST00000138424 1187 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
Lmx1bO88609 Gm12973-201ENSMUST00000143967 607 ntTSL 5 BASIC14.65□□□□□ -0.06
Lmx1bO88609 Ciao1-204ENSMUST00000174030 1109 ntTSL 5 BASIC14.65□□□□□ -0.06
Lmx1bO88609 Mzt1-203ENSMUST00000227948 952 ntBASIC14.65□□□□□ -0.06
Lmx1bO88609 Klf13-201ENSMUST00000063694 6396 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
Lmx1bO88609 Aqp1-201ENSMUST00000004774 2627 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
Lmx1bO88609 Snx30-201ENSMUST00000030080 7314 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
Lmx1bO88609 Arhgap39-202ENSMUST00000077821 4494 ntAPPRIS P3 TSL 1 (best) BASIC14.65□□□□□ -0.06
Lmx1bO88609 B3gnt4-201ENSMUST00000031384 1423 ntAPPRIS P1 BASIC14.65□□□□□ -0.06
Lmx1bO88609 Ttc6-203ENSMUST00000172939 5782 ntAPPRIS P1 TSL 5 BASIC14.65□□□□□ -0.06
Lmx1bO88609 Mettl27-205ENSMUST00000111221 1796 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
Lmx1bO88609 Taf6l-213ENSMUST00000189739 1794 ntTSL 5 BASIC14.65□□□□□ -0.06
Lmx1bO88609 Sgsm2-202ENSMUST00000081799 4873 ntAPPRIS ALT2 TSL 5 BASIC14.65□□□□□ -0.06
Lmx1bO88609 Was-201ENSMUST00000033505 2114 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
Lmx1bO88609 Letm1-203ENSMUST00000148451 2478 ntTSL 2 BASIC14.65□□□□□ -0.06
Lmx1bO88609 Wrb-201ENSMUST00000023913 2495 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
Lmx1bO88609 Erich2-203ENSMUST00000134607 1659 ntAPPRIS ALT2 TSL 5 BASIC14.65□□□□□ -0.06
Lmx1bO88609 Coro1a-201ENSMUST00000032949 1660 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
Lmx1bO88609 A130010J15Rik-201ENSMUST00000110831 2257 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Lmx1bO88609 Lonp2-201ENSMUST00000034141 2860 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Lmx1bO88609 Cux1-206ENSMUST00000176172 4882 ntAPPRIS ALT2 TSL 1 (best) BASIC14.64□□□□□ -0.07
Lmx1bO88609 Xiap-203ENSMUST00000115094 6542 ntAPPRIS P1 TSL 5 BASIC14.64□□□□□ -0.07
Lmx1bO88609 Neurl1a-202ENSMUST00000111808 4157 ntAPPRIS P3 TSL 1 (best) BASIC14.64□□□□□ -0.07
Lmx1bO88609 Braf-201ENSMUST00000002487 9728 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Lmx1bO88609 Sclt1-201ENSMUST00000026866 3005 ntAPPRIS P1 TSL 5 BASIC14.64□□□□□ -0.07
Lmx1bO88609 Mamstr-201ENSMUST00000148532 1606 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Lmx1bO88609 Scml4-203ENSMUST00000105495 1033 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
Lmx1bO88609 Tsacc-202ENSMUST00000107556 584 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Lmx1bO88609 Gm12216-201ENSMUST00000117316 1152 ntAPPRIS ALT2 TSL 1 (best) BASIC14.64□□□□□ -0.07
Lmx1bO88609 Tex261-201ENSMUST00000014892 2984 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Lmx1bO88609 2210408F21Rik-212ENSMUST00000152157 490 ntTSL 2 BASIC14.64□□□□□ -0.07
Lmx1bO88609 Gm13054-201ENSMUST00000154192 820 ntTSL 3 BASIC14.64□□□□□ -0.07
Lmx1bO88609 Vsig2-201ENSMUST00000002008 1166 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Lmx1bO88609 AC107711.5-202ENSMUST00000226429 702 ntBASIC14.64□□□□□ -0.07
Retrieved 100 of 76,532 protein–RNA pairs in 28.6 ms