Protein–RNA interactions for Protein: O35627

Nr1i3, Nuclear receptor subfamily 1 group I member 3, mousemouse

Predictions only

Length 358 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nr1i3O35627 Gm43799-201ENSMUST00000201845 579 ntBASIC17.43■□□□□ 0.38
Nr1i3O35627 AC134329.2-201ENSMUST00000217897 428 ntBASIC17.43■□□□□ 0.38
Nr1i3O35627 Men1-204ENSMUST00000113500 2742 ntAPPRIS P2 TSL 5 BASIC17.43■□□□□ 0.38
Nr1i3O35627 Rgs9-202ENSMUST00000103062 1743 ntTSL 5 BASIC17.43■□□□□ 0.38
Nr1i3O35627 Wwox-207ENSMUST00000160862 1715 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
Nr1i3O35627 Snph-203ENSMUST00000109875 4910 ntAPPRIS P3 TSL 1 (best) BASIC17.43■□□□□ 0.38
Nr1i3O35627 Fam149b-216ENSMUST00000225942 2151 ntAPPRIS ALT2 BASIC17.43■□□□□ 0.38
Nr1i3O35627 Trim28-201ENSMUST00000005705 3245 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Nr1i3O35627 Bpifb5-201ENSMUST00000045959 1637 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Nr1i3O35627 Fam110a-201ENSMUST00000062047 1754 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Nr1i3O35627 Slc9a3r1-201ENSMUST00000021077 1925 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Nr1i3O35627 Cdca7l-201ENSMUST00000021592 2957 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Nr1i3O35627 Ankrd17-203ENSMUST00000168058 9311 ntAPPRIS ALT2 TSL 5 BASIC17.42■□□□□ 0.38
Nr1i3O35627 Rassf7-201ENSMUST00000046890 1525 ntAPPRIS P2 TSL 1 (best) BASIC17.42■□□□□ 0.38
Nr1i3O35627 Dgkz-202ENSMUST00000099709 3512 ntAPPRIS ALT2 TSL 5 BASIC17.42■□□□□ 0.38
Nr1i3O35627 Ep300-201ENSMUST00000068387 9566 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Nr1i3O35627 Nup98-205ENSMUST00000211022 3132 ntTSL 2 BASIC17.42■□□□□ 0.38
Nr1i3O35627 Rmdn1-201ENSMUST00000029888 1734 ntAPPRIS P2 TSL 1 (best) BASIC17.42■□□□□ 0.38
Nr1i3O35627 Tmem150b-202ENSMUST00000086364 2822 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
Nr1i3O35627 Slc48a1-201ENSMUST00000117892 2536 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Nr1i3O35627 Rps5-202ENSMUST00000108539 794 ntAPPRIS P1 TSL 2 BASIC17.42■□□□□ 0.38
Nr1i3O35627 Psmd13-209ENSMUST00000164681 726 ntTSL 5 BASIC17.42■□□□□ 0.38
Nr1i3O35627 Prr3-209ENSMUST00000174849 581 ntTSL 2 BASIC17.42■□□□□ 0.38
Nr1i3O35627 Bex3-204ENSMUST00000178632 933 ntAPPRIS P3 TSL 2 BASIC17.42■□□□□ 0.38
Nr1i3O35627 Gm43791-201ENSMUST00000202914 468 ntTSL 5 BASIC17.42■□□□□ 0.38
Nr1i3O35627 Fuz-209ENSMUST00000208179 1164 ntTSL 5 BASIC17.42■□□□□ 0.38
Nr1i3O35627 Ly6h-202ENSMUST00000065417 985 ntAPPRIS ALT1 TSL 2 BASIC17.42■□□□□ 0.38
Nr1i3O35627 Olfr315-201ENSMUST00000081533 998 ntAPPRIS P1 BASIC17.42■□□□□ 0.38
Nr1i3O35627 Pnpla2-202ENSMUST00000064151 1799 ntAPPRIS P3 TSL 1 (best) BASIC17.42■□□□□ 0.38
Nr1i3O35627 Patz1-205ENSMUST00000110043 3702 ntAPPRIS P1 TSL 5 BASIC17.42■□□□□ 0.38
Nr1i3O35627 Wnt5b-202ENSMUST00000118120 2115 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
Nr1i3O35627 Cryl1-201ENSMUST00000022517 1497 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Nr1i3O35627 Lrch1-205ENSMUST00000228252 3125 ntAPPRIS ALT2 BASIC17.42■□□□□ 0.38
Nr1i3O35627 Syngr3-201ENSMUST00000007236 1965 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Nr1i3O35627 Lefty2-201ENSMUST00000085797 2473 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Nr1i3O35627 Wscd1-202ENSMUST00000108510 2956 ntAPPRIS P1 TSL 5 BASIC17.42■□□□□ 0.38
Nr1i3O35627 Col27a1-201ENSMUST00000036300 7612 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Nr1i3O35627 Dok1-201ENSMUST00000089651 1807 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Nr1i3O35627 Kifc3-203ENSMUST00000169748 3384 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
Nr1i3O35627 Sh2b1-201ENSMUST00000032978 3393 ntAPPRIS P3 TSL 1 (best) BASIC17.42■□□□□ 0.38
Nr1i3O35627 Agfg1-204ENSMUST00000186302 2352 ntAPPRIS ALT1 TSL 5 BASIC17.42■□□□□ 0.38
Nr1i3O35627 Mapk8ip1-201ENSMUST00000050312 2930 ntAPPRIS P3 TSL 1 (best) BASIC17.41■□□□□ 0.38
Nr1i3O35627 Ppp2r5e-201ENSMUST00000021447 4810 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Nr1i3O35627 Tbp-202ENSMUST00000117593 2067 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Nr1i3O35627 Prmt1-203ENSMUST00000207370 2147 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Nr1i3O35627 Ehmt2-202ENSMUST00000078061 3746 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
Nr1i3O35627 Prkar2b-202ENSMUST00000036497 3378 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Nr1i3O35627 Gm8668-201ENSMUST00000120559 1447 ntBASIC17.41■□□□□ 0.38
Nr1i3O35627 Gm6588-201ENSMUST00000100882 2313 ntAPPRIS P1 BASIC17.41■□□□□ 0.38
Nr1i3O35627 Syn1-201ENSMUST00000081893 3209 ntAPPRIS P4 TSL 5 BASIC17.41■□□□□ 0.38
Nr1i3O35627 Rabggta-203ENSMUST00000169237 2547 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Nr1i3O35627 Ddx50-201ENSMUST00000020270 2535 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Nr1i3O35627 Gng2-202ENSMUST00000159028 458 ntAPPRIS P1 TSL 2 BASIC17.41■□□□□ 0.38
Nr1i3O35627 Gm37722-201ENSMUST00000193757 208 ntBASIC17.41■□□□□ 0.38
Nr1i3O35627 Gm45709-201ENSMUST00000213052 1075 ntTSL 5 BASIC17.41■□□□□ 0.38
Nr1i3O35627 Gm35240-201ENSMUST00000218335 661 ntTSL 2 BASIC17.41■□□□□ 0.38
Nr1i3O35627 Rpl39l-201ENSMUST00000044103 805 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Nr1i3O35627 Pih1d1-201ENSMUST00000085375 1185 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Nr1i3O35627 Slc39a1-201ENSMUST00000015467 2364 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Nr1i3O35627 Letm2-208ENSMUST00000210616 2974 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
Nr1i3O35627 Gm16011-201ENSMUST00000121567 2662 ntBASIC17.41■□□□□ 0.38
Nr1i3O35627 Dnajb5-201ENSMUST00000037872 3291 ntAPPRIS ALT2 TSL 5 BASIC17.41■□□□□ 0.38
Nr1i3O35627 Pgc-201ENSMUST00000024782 1388 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Nr1i3O35627 Dnajc3-201ENSMUST00000022734 5141 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Nr1i3O35627 Tgfb2-201ENSMUST00000045288 5116 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Nr1i3O35627 Cap1-203ENSMUST00000106257 2768 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Nr1i3O35627 Unc13b-201ENSMUST00000079978 6354 ntAPPRIS P2 TSL 5 BASIC17.4■□□□□ 0.38
Nr1i3O35627 Matn1-201ENSMUST00000102576 2001 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Nr1i3O35627 Prrg2-208ENSMUST00000210690 1623 ntAPPRIS P2 TSL 1 (best) BASIC17.4■□□□□ 0.38
Nr1i3O35627 Ncoa1-201ENSMUST00000085814 7329 ntAPPRIS P2 TSL 1 (best) BASIC17.4■□□□□ 0.38
Nr1i3O35627 Fgfr2-215ENSMUST00000122054 3323 ntAPPRIS P4 TSL 1 (best) BASIC17.4■□□□□ 0.38
Nr1i3O35627 Sytl3-204ENSMUST00000159880 1296 ntTSL 5 BASIC17.4■□□□□ 0.38
Nr1i3O35627 Ndufab1-ps-201ENSMUST00000166096 468 ntBASIC17.4■□□□□ 0.38
Nr1i3O35627 Plekha4-207ENSMUST00000211227 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
Nr1i3O35627 Gm21559-201ENSMUST00000220638 855 ntBASIC17.4■□□□□ 0.38
Nr1i3O35627 Fgf8-202ENSMUST00000026241 1168 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
Nr1i3O35627 Mrps28-201ENSMUST00000042148 783 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Nr1i3O35627 Krtcap3-201ENSMUST00000054829 904 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Nr1i3O35627 Gm8587-201ENSMUST00000076538 843 ntBASIC17.4■□□□□ 0.38
Nr1i3O35627 Gm17501-201ENSMUST00000181247 1700 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
Nr1i3O35627 9530082P21Rik-202ENSMUST00000181291 1798 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
Nr1i3O35627 H2-K1-205ENSMUST00000172912 1570 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
Nr1i3O35627 Tubb4b-201ENSMUST00000043584 1598 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Nr1i3O35627 Dctd-201ENSMUST00000033966 2072 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Nr1i3O35627 A4galt-201ENSMUST00000049530 2088 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Nr1i3O35627 Myo5b-201ENSMUST00000074157 6745 ntAPPRIS P2 TSL 1 (best) BASIC17.4■□□□□ 0.38
Nr1i3O35627 Zfp318-201ENSMUST00000113481 7850 ntAPPRIS P4 TSL 5 BASIC17.39■□□□□ 0.37
Nr1i3O35627 AC132265.1-201ENSMUST00000219233 1665 ntBASIC17.39■□□□□ 0.37
Nr1i3O35627 Fhl3-201ENSMUST00000038684 1664 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
Nr1i3O35627 Txnrd2-215ENSMUST00000206151 2874 ntAPPRIS P2 TSL 5 BASIC17.39■□□□□ 0.37
Nr1i3O35627 Ip6k2-206ENSMUST00000193560 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.37
Nr1i3O35627 Chst8-204ENSMUST00000205259 1980 ntAPPRIS P1 TSL 5 BASIC17.39■□□□□ 0.37
Nr1i3O35627 Shroom3-201ENSMUST00000113051 6435 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
Nr1i3O35627 Npb-202ENSMUST00000106194 530 ntAPPRIS ALT2 TSL 2 BASIC17.39■□□□□ 0.37
Nr1i3O35627 Npb-203ENSMUST00000106195 542 ntAPPRIS P3 TSL 1 (best) BASIC17.39■□□□□ 0.37
Nr1i3O35627 Izumo1r-204ENSMUST00000121116 726 ntTSL 2 BASIC17.39■□□□□ 0.37
Nr1i3O35627 Calu-208ENSMUST00000173694 611 ntTSL 5 BASIC17.39■□□□□ 0.37
Nr1i3O35627 Nudt21-204ENSMUST00000212981 1184 ntTSL 3 BASIC17.39■□□□□ 0.37
Nr1i3O35627 Ttc32-203ENSMUST00000219488 768 ntTSL 3 BASIC17.39■□□□□ 0.37
Nr1i3O35627 Olfr279-201ENSMUST00000050451 933 ntAPPRIS P1 BASIC17.39■□□□□ 0.37
Retrieved 100 of 76,532 protein–RNA pairs in 26.8 ms