Protein–RNA interactions for Protein: F8VPK8

Pcdh9, Protocadherin 9, mousemouse

Predictions only

Length 1,237 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Pcdh9F8VPK8 Gtf3a-201ENSMUST00000132102 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
Pcdh9F8VPK8 Ocel1-201ENSMUST00000002469 1611 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Pcdh9F8VPK8 5430416N02Rik-202ENSMUST00000181873 626 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
Pcdh9F8VPK8 Krtap5-1-202ENSMUST00000188274 742 ntBASIC16.64■□□□□ 0.25
Pcdh9F8VPK8 Pldi-201ENSMUST00000036304 853 ntTSL 2 BASIC16.64■□□□□ 0.25
Pcdh9F8VPK8 Klf13-201ENSMUST00000063694 6396 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Pcdh9F8VPK8 Usf3-201ENSMUST00000088356 757 ntAPPRIS ALT2 TSL 5 BASIC16.64■□□□□ 0.25
Pcdh9F8VPK8 Lias-202ENSMUST00000122026 1668 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Pcdh9F8VPK8 Nap1l4-201ENSMUST00000072727 2285 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
Pcdh9F8VPK8 Fa2h-201ENSMUST00000038475 2492 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Pcdh9F8VPK8 Gm16011-201ENSMUST00000121567 2662 ntBASIC16.64■□□□□ 0.25
Pcdh9F8VPK8 Mapk14-201ENSMUST00000004990 3547 ntAPPRIS ALT1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Pcdh9F8VPK8 Mapk14-202ENSMUST00000062694 3547 ntAPPRIS P3 TSL 1 (best) BASIC16.64■□□□□ 0.25
Pcdh9F8VPK8 Hnrnpll-201ENSMUST00000061331 3116 ntAPPRIS P1 TSL 5 BASIC16.64■□□□□ 0.25
Pcdh9F8VPK8 Cidec-202ENSMUST00000113089 1720 ntAPPRIS P2 TSL 1 (best) BASIC16.64■□□□□ 0.25
Pcdh9F8VPK8 Cap1-203ENSMUST00000106257 2768 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Pcdh9F8VPK8 Tubgcp4-202ENSMUST00000110657 1992 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
Pcdh9F8VPK8 Ank1-203ENSMUST00000110688 7206 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
Pcdh9F8VPK8 Elp6-201ENSMUST00000068071 2219 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
Pcdh9F8VPK8 Cadps2-202ENSMUST00000069074 3935 ntTSL 5 BASIC16.64■□□□□ 0.25
Pcdh9F8VPK8 Zc3h14-204ENSMUST00000110105 3514 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Pcdh9F8VPK8 Sh3rf3-205ENSMUST00000153031 5682 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Pcdh9F8VPK8 Fbxl3-206ENSMUST00000145693 3352 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Pcdh9F8VPK8 Taf15-201ENSMUST00000021018 2068 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Pcdh9F8VPK8 Srpr-201ENSMUST00000034541 2993 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Pcdh9F8VPK8 Nubpl-201ENSMUST00000040090 2987 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Pcdh9F8VPK8 Fnbp1-204ENSMUST00000100208 1859 ntTSL 5 BASIC16.63■□□□□ 0.25
Pcdh9F8VPK8 Sptbn4-202ENSMUST00000108362 4861 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
Pcdh9F8VPK8 Shank3-203ENSMUST00000109309 7365 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
Pcdh9F8VPK8 B3gat2-203ENSMUST00000144602 1488 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
Pcdh9F8VPK8 Wnt2b-201ENSMUST00000029429 3318 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Pcdh9F8VPK8 Rnf168-203ENSMUST00000171474 4460 ntAPPRIS P2 TSL 1 (best) BASIC16.63■□□□□ 0.25
Pcdh9F8VPK8 Bcam-201ENSMUST00000003061 2429 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Pcdh9F8VPK8 Gm3764-209ENSMUST00000181550 1093 ntTSL 3 BASIC16.63■□□□□ 0.25
Pcdh9F8VPK8 Limd2-202ENSMUST00000064545 798 ntAPPRIS P1 TSL 2 BASIC16.63■□□□□ 0.25
Pcdh9F8VPK8 Ldlrad1-201ENSMUST00000094916 1093 ntAPPRIS P1 TSL 5 BASIC16.63■□□□□ 0.25
Pcdh9F8VPK8 Tacc1-201ENSMUST00000084030 7788 ntAPPRIS P4 TSL 1 (best) BASIC16.63■□□□□ 0.25
Pcdh9F8VPK8 Pnpo-201ENSMUST00000018803 1994 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Pcdh9F8VPK8 Slc8b1-202ENSMUST00000076051 2661 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
Pcdh9F8VPK8 Dpagt1-201ENSMUST00000054708 2205 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Pcdh9F8VPK8 Syt3-202ENSMUST00000118962 2494 ntAPPRIS P1 TSL 5 BASIC16.63■□□□□ 0.25
Pcdh9F8VPK8 Zbtb16-202ENSMUST00000216150 2505 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Pcdh9F8VPK8 Nrxn1-206ENSMUST00000160800 5683 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
Pcdh9F8VPK8 Gps1-202ENSMUST00000116305 1827 ntAPPRIS P2 TSL 1 (best) BASIC16.63■□□□□ 0.25
Pcdh9F8VPK8 Casq1-201ENSMUST00000003554 1847 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Pcdh9F8VPK8 Dmpk-202ENSMUST00000108473 2588 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
Pcdh9F8VPK8 Ttl-201ENSMUST00000035812 4567 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Pcdh9F8VPK8 Mbp-206ENSMUST00000102812 2108 ntAPPRIS ALT2 TSL 2 BASIC16.63■□□□□ 0.25
Pcdh9F8VPK8 Fam160a2-203ENSMUST00000118726 2855 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
Pcdh9F8VPK8 Kptn-201ENSMUST00000006178 1630 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Pcdh9F8VPK8 Golt1a-201ENSMUST00000094557 1865 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Pcdh9F8VPK8 Ppm1h-206ENSMUST00000161487 2931 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
Pcdh9F8VPK8 Stxbp5l-202ENSMUST00000114775 1691 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
Pcdh9F8VPK8 Iqcd-202ENSMUST00000094391 1673 ntAPPRIS P2 TSL 1 (best) BASIC16.62■□□□□ 0.25
Pcdh9F8VPK8 Gm8668-201ENSMUST00000120559 1447 ntBASIC16.62■□□□□ 0.25
Pcdh9F8VPK8 Fut7-203ENSMUST00000114278 1990 ntAPPRIS P3 TSL 1 (best) BASIC16.62■□□□□ 0.25
Pcdh9F8VPK8 Fut7-201ENSMUST00000041654 1970 ntAPPRIS P3 TSL 5 BASIC16.62■□□□□ 0.25
Pcdh9F8VPK8 Nat8l-201ENSMUST00000056355 6529 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Pcdh9F8VPK8 I0C0044D17Rik-201ENSMUST00000097964 2264 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Pcdh9F8VPK8 Aftph-201ENSMUST00000035350 3998 ntAPPRIS P3 TSL 1 (best) BASIC16.62■□□□□ 0.25
Pcdh9F8VPK8 Wbp4-201ENSMUST00000022601 3704 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Pcdh9F8VPK8 Mios-201ENSMUST00000040017 3710 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Pcdh9F8VPK8 Wscd1-202ENSMUST00000108510 2956 ntAPPRIS P1 TSL 5 BASIC16.62■□□□□ 0.25
Pcdh9F8VPK8 Comtd1-204ENSMUST00000177527 714 ntAPPRIS ALT2 TSL 5 BASIC16.62■□□□□ 0.25
Pcdh9F8VPK8 Gm19426-201ENSMUST00000181711 726 ntAPPRIS P1 TSL 2 BASIC16.62■□□□□ 0.25
Pcdh9F8VPK8 Mir1668-201ENSMUST00000184114 107 ntBASIC16.62■□□□□ 0.25
Pcdh9F8VPK8 AC153526.5-201ENSMUST00000218661 2147 ntBASIC16.62■□□□□ 0.25
Pcdh9F8VPK8 Sec11c-201ENSMUST00000025394 807 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Pcdh9F8VPK8 Nudt8-202ENSMUST00000025802 787 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Pcdh9F8VPK8 Snrnp35-201ENSMUST00000031349 1115 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Pcdh9F8VPK8 Psmd4-201ENSMUST00000071664 1276 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
Pcdh9F8VPK8 D430001F17Rik-201ENSMUST00000141344 1858 ntTSL 5 BASIC16.62■□□□□ 0.25
Pcdh9F8VPK8 Naprt-201ENSMUST00000023237 1890 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Pcdh9F8VPK8 Rabggta-203ENSMUST00000169237 2547 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Pcdh9F8VPK8 Cend1-201ENSMUST00000084436 1672 ntAPPRIS P1 TSL 5 BASIC16.62■□□□□ 0.25
Pcdh9F8VPK8 Tssc4-206ENSMUST00000177841 1364 ntAPPRIS P1 TSL 2 BASIC16.62■□□□□ 0.25
Pcdh9F8VPK8 Ube2r2-201ENSMUST00000040008 3600 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Pcdh9F8VPK8 Urgcp-201ENSMUST00000053427 5527 ntAPPRIS ALT2 TSL 5 BASIC16.62■□□□□ 0.25
Pcdh9F8VPK8 Shq1-202ENSMUST00000113312 6816 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Pcdh9F8VPK8 Pde4b-208ENSMUST00000106911 3020 ntAPPRIS ALT1 TSL 5 BASIC16.62■□□□□ 0.25
Pcdh9F8VPK8 Sh3bp2-203ENSMUST00000118545 3034 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
Pcdh9F8VPK8 Tbp-202ENSMUST00000117593 2067 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Pcdh9F8VPK8 Tra2a-201ENSMUST00000031841 1799 ntAPPRIS P3 TSL 5 BASIC16.61■□□□□ 0.25
Pcdh9F8VPK8 Rnf103-202ENSMUST00000114178 3431 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
Pcdh9F8VPK8 Htatsf1-201ENSMUST00000088652 2810 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Pcdh9F8VPK8 Slc48a1-201ENSMUST00000117892 2536 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Pcdh9F8VPK8 Mapt-202ENSMUST00000106988 2202 ntAPPRIS ALT2 TSL 5 BASIC16.61■□□□□ 0.25
Pcdh9F8VPK8 Cep152-201ENSMUST00000089776 5768 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Pcdh9F8VPK8 Mapk7-201ENSMUST00000079080 3019 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Pcdh9F8VPK8 Hipk2-206ENSMUST00000161779 7684 ntAPPRIS P3 TSL 1 (best) BASIC16.61■□□□□ 0.25
Pcdh9F8VPK8 Snx30-201ENSMUST00000030080 7314 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Pcdh9F8VPK8 Lmtk2-201ENSMUST00000041804 8114 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Pcdh9F8VPK8 Gm6433-201ENSMUST00000118634 875 ntBASIC16.61■□□□□ 0.25
Pcdh9F8VPK8 1810062O18Rik-202ENSMUST00000128848 745 ntTSL 3 BASIC16.61■□□□□ 0.25
Pcdh9F8VPK8 Gm26879-201ENSMUST00000181127 1176 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
Pcdh9F8VPK8 Pcyox1-206ENSMUST00000204116 546 ntTSL 5 BASIC16.61■□□□□ 0.25
Pcdh9F8VPK8 Mrpl21-201ENSMUST00000025743 802 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
Pcdh9F8VPK8 H2afz-201ENSMUST00000041045 1069 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Pcdh9F8VPK8 Abcc5-203ENSMUST00000096199 1136 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
Pcdh9F8VPK8 Gm26825-201ENSMUST00000181751 2026 ntTSL 5 BASIC16.61■□□□□ 0.25
Retrieved 100 of 76,532 protein–RNA pairs in 57.1 ms