Protein–RNA interactions for Protein: Q9Y3X0

CCDC9, Coiled-coil domain-containing protein 9, humanhuman

Known RBP Predictions only

Length 531 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC9Q9Y3X0 AC073342.1-202ENST00000446192 457 ntTSL 5 BASIC5.02□□□□□ -1.61
CCDC9Q9Y3X0 AL590639.1-201ENST00000456484 337 ntBASIC5.02□□□□□ -1.61
CCDC9Q9Y3X0 AC025518.1-201ENST00000479856 347 ntBASIC5.02□□□□□ -1.61
CCDC9Q9Y3X0 AC069113.1-201ENST00000517763 267 ntBASIC5.02□□□□□ -1.61
CCDC9Q9Y3X0 AC022634.1-201ENST00000520765 532 ntBASIC5.02□□□□□ -1.61
CCDC9Q9Y3X0 AC087362.1-201ENST00000527912 434 ntTSL 5 BASIC5.02□□□□□ -1.61
CCDC9Q9Y3X0 AC090115.3-201ENST00000553218 849 ntBASIC5.02□□□□□ -1.61
CCDC9Q9Y3X0 AL451007.1-201ENST00000595491 289 ntBASIC5.02□□□□□ -1.61
CCDC9Q9Y3X0 DAOA-AS1_2.1-201ENST00000614829 187 ntBASIC5.02□□□□□ -1.61
CCDC9Q9Y3X0 AC103705.1-201ENST00000619013 241 ntBASIC5.02□□□□□ -1.61
CCDC9Q9Y3X0 HOTAIRM1_5.1-201ENST00000619311 145 ntBASIC5.02□□□□□ -1.61
CCDC9Q9Y3X0 AC006504.8-201ENST00000621046 635 ntBASIC5.02□□□□□ -1.61
CCDC9Q9Y3X0 AC009033.1-201ENST00000624279 431 ntBASIC5.02□□□□□ -1.61
CCDC9Q9Y3X0 AC007823.1-201ENST00000569932 1566 ntBASIC5.02□□□□□ -1.61
CCDC9Q9Y3X0 HDX-202ENST00000373177 2924 ntAPPRIS P1 TSL 1 (best) BASIC5.02□□□□□ -1.61
CCDC9Q9Y3X0 ASAH1-265ENST00000637922 2297 ntTSL 5 BASIC5.02□□□□□ -1.61
CCDC9Q9Y3X0 MUC7-201ENST00000304887 2443 ntAPPRIS P2 TSL 1 (best) BASIC5.02□□□□□ -1.61
CCDC9Q9Y3X0 AL049781.1-201ENST00000623195 3585 ntBASIC5.01□□□□□ -1.61
CCDC9Q9Y3X0 HTR2B-201ENST00000258400 2246 ntAPPRIS P1 TSL 1 (best) BASIC5.01□□□□□ -1.61
CCDC9Q9Y3X0 CCNT2-201ENST00000264157 6917 ntAPPRIS P1 TSL 1 (best) BASIC5.01□□□□□ -1.61
CCDC9Q9Y3X0 POSTN-203ENST00000379747 3373 ntAPPRIS P3 TSL 1 (best) BASIC5.01□□□□□ -1.61
CCDC9Q9Y3X0 CNGA1-201ENST00000358519 2627 ntAPPRIS P3 TSL 1 (best) BASIC5.01□□□□□ -1.61
CCDC9Q9Y3X0 MACF1-231ENST00000564288 24828 ntAPPRIS ALT2 TSL 5 BASIC5.01□□□□□ -1.61
CCDC9Q9Y3X0 SNORD9-201ENST00000362566 104 ntBASIC5.01□□□□□ -1.61
CCDC9Q9Y3X0 Y_RNA.373-201ENST00000365600 103 ntBASIC5.01□□□□□ -1.61
CCDC9Q9Y3X0 Y_RNA.510-201ENST00000384511 114 ntBASIC5.01□□□□□ -1.61
CCDC9Q9Y3X0 LINC01402-201ENST00000422226 279 ntTSL 3 BASIC5.01□□□□□ -1.61
CCDC9Q9Y3X0 AC105399.1-201ENST00000422418 418 ntTSL 2 BASIC5.01□□□□□ -1.61
CCDC9Q9Y3X0 RPL21P40-201ENST00000428586 483 ntBASIC5.01□□□□□ -1.61
CCDC9Q9Y3X0 AC092832.2-201ENST00000456621 389 ntTSL 2 BASIC5.01□□□□□ -1.61
CCDC9Q9Y3X0 TBCAP3-201ENST00000512475 312 ntBASIC5.01□□□□□ -1.61
CCDC9Q9Y3X0 RNU2-27P-201ENST00000516185 142 ntBASIC5.01□□□□□ -1.61
CCDC9Q9Y3X0 IGKV2-38-201ENST00000517443 247 ntBASIC5.01□□□□□ -1.61
CCDC9Q9Y3X0 AC098617.1-215ENST00000594798 1152 ntTSL 5 BASIC5.01□□□□□ -1.61
CCDC9Q9Y3X0 AL035413.2-201ENST00000604801 525 ntBASIC5.01□□□□□ -1.61
CCDC9Q9Y3X0 BNIP3P10-201ENST00000605360 577 ntBASIC5.01□□□□□ -1.61
CCDC9Q9Y3X0 AC116312.1-201ENST00000606841 314 ntBASIC5.01□□□□□ -1.61
CCDC9Q9Y3X0 KCNQ1OT1_3.1-201ENST00000616504 116 ntBASIC5.01□□□□□ -1.61
CCDC9Q9Y3X0 AL591424.2-201ENST00000617023 128 ntBASIC5.01□□□□□ -1.61
CCDC9Q9Y3X0 DLX6-AS1_1.1-201ENST00000621599 180 ntBASIC5.01□□□□□ -1.61
CCDC9Q9Y3X0 AC104971.4-201ENST00000622763 249 ntTSL 5 BASIC5.01□□□□□ -1.61
CCDC9Q9Y3X0 FGD4-211ENST00000531134 2924 ntTSL 2 BASIC5.01□□□□□ -1.61
CCDC9Q9Y3X0 AC093908.1-201ENST00000623125 8092 ntBASIC5.01□□□□□ -1.61
CCDC9Q9Y3X0 MFN1-201ENST00000263969 2754 ntAPPRIS P1 TSL 1 (best) BASIC5.01□□□□□ -1.61
CCDC9Q9Y3X0 RANBP2-201ENST00000283195 11711 ntAPPRIS P1 TSL 1 (best) BASIC5.01□□□□□ -1.61
CCDC9Q9Y3X0 CASC19-280ENST00000642102 1351 ntBASIC5.01□□□□□ -1.61
CCDC9Q9Y3X0 ZBED5-201ENST00000413761 2512 ntAPPRIS P1 TSL 1 (best) BASIC5□□□□□ -1.61
CCDC9Q9Y3X0 FAM214A-216ENST00000619572 3548 ntAPPRIS P1 TSL 1 (best) BASIC5□□□□□ -1.61
CCDC9Q9Y3X0 KIAA0586-215ENST00000619722 5597 ntAPPRIS ALT2 TSL 2 BASIC5□□□□□ -1.61
CCDC9Q9Y3X0 RNU6-799P-201ENST00000363567 107 ntBASIC5□□□□□ -1.61
CCDC9Q9Y3X0 RNU6-522P-201ENST00000364497 107 ntBASIC5□□□□□ -1.61
CCDC9Q9Y3X0 MIR767-201ENST00000390228 109 ntBASIC5□□□□□ -1.61
CCDC9Q9Y3X0 RNU2-3P-201ENST00000410144 191 ntBASIC5□□□□□ -1.61
CCDC9Q9Y3X0 ELF3-AS1-201ENST00000415582 500 ntTSL 2 BASIC5□□□□□ -1.61
CCDC9Q9Y3X0 RPL7P10-201ENST00000417407 739 ntBASIC5□□□□□ -1.61
CCDC9Q9Y3X0 PGBD4P6-201ENST00000421501 610 ntBASIC5□□□□□ -1.61
CCDC9Q9Y3X0 ARF4P2-201ENST00000430209 526 ntBASIC5□□□□□ -1.61
CCDC9Q9Y3X0 AC007547.1-201ENST00000462177 490 ntBASIC5□□□□□ -1.61
CCDC9Q9Y3X0 RN7SL271P-201ENST00000487601 295 ntBASIC5□□□□□ -1.61
CCDC9Q9Y3X0 STMN1P2-201ENST00000508435 439 ntBASIC5□□□□□ -1.61
CCDC9Q9Y3X0 AC098799.2-201ENST00000509466 868 ntBASIC5□□□□□ -1.61
CCDC9Q9Y3X0 AC021146.3-201ENST00000511911 260 ntBASIC5□□□□□ -1.61
CCDC9Q9Y3X0 AC025465.4-201ENST00000513422 638 ntBASIC5□□□□□ -1.61
CCDC9Q9Y3X0 CYCSP27-201ENST00000527643 293 ntBASIC5□□□□□ -1.61
CCDC9Q9Y3X0 AP000763.2-201ENST00000540641 163 ntBASIC5□□□□□ -1.61
CCDC9Q9Y3X0 AC011611.2-201ENST00000549888 358 ntTSL 3 BASIC5□□□□□ -1.61
CCDC9Q9Y3X0 DNAJC8P1-201ENST00000554535 372 ntBASIC5□□□□□ -1.61
CCDC9Q9Y3X0 AF001550.1-201ENST00000572747 573 ntTSL 4 BASIC5□□□□□ -1.61
CCDC9Q9Y3X0 AC087045.1-201ENST00000605856 382 ntBASIC5□□□□□ -1.61
CCDC9Q9Y3X0 AC002044.1-201ENST00000606707 158 ntBASIC5□□□□□ -1.61
CCDC9Q9Y3X0 AC006386.2-201ENST00000624491 75 ntBASIC5□□□□□ -1.61
CCDC9Q9Y3X0 AC012005.1-201ENST00000624575 75 ntBASIC5□□□□□ -1.61
CCDC9Q9Y3X0 MBD5-212ENST00000627651 5610 ntTSL 5 BASIC4.99□□□□□ -1.61
CCDC9Q9Y3X0 LRRC39-201ENST00000342895 1881 ntAPPRIS P1 TSL 5 BASIC4.99□□□□□ -1.61
CCDC9Q9Y3X0 EFTUD1P2-201ENST00000514817 1603 ntBASIC4.99□□□□□ -1.61
CCDC9Q9Y3X0 C5orf46-201ENST00000318315 506 ntAPPRIS P2 TSL 1 (best) BASIC4.99□□□□□ -1.61
CCDC9Q9Y3X0 Y_RNA.100-201ENST00000363141 102 ntBASIC4.99□□□□□ -1.61
CCDC9Q9Y3X0 RNU6-266P-201ENST00000364225 107 ntBASIC4.99□□□□□ -1.61
CCDC9Q9Y3X0 RNU6-384P-201ENST00000364900 104 ntBASIC4.99□□□□□ -1.61
CCDC9Q9Y3X0 Y_RNA.324-201ENST00000365165 102 ntBASIC4.99□□□□□ -1.61
CCDC9Q9Y3X0 RNU6-898P-201ENST00000365627 104 ntBASIC4.99□□□□□ -1.61
CCDC9Q9Y3X0 RNU6-876P-201ENST00000391295 104 ntBASIC4.99□□□□□ -1.61
CCDC9Q9Y3X0 UBA52P6-201ENST00000399822 382 ntBASIC4.99□□□□□ -1.61
CCDC9Q9Y3X0 RAP1BP3-201ENST00000407180 549 ntBASIC4.99□□□□□ -1.61
CCDC9Q9Y3X0 SNORA3C-201ENST00000408792 125 ntBASIC4.99□□□□□ -1.61
CCDC9Q9Y3X0 CYCSP33-201ENST00000414485 327 ntBASIC4.99□□□□□ -1.61
CCDC9Q9Y3X0 AC007463.1-201ENST00000416534 734 ntTSL 3 BASIC4.99□□□□□ -1.61
CCDC9Q9Y3X0 AC004552.1-201ENST00000419089 348 ntBASIC4.99□□□□□ -1.61
CCDC9Q9Y3X0 RPL30P16-201ENST00000419341 429 ntBASIC4.99□□□□□ -1.61
CCDC9Q9Y3X0 AC245291.1-201ENST00000419501 328 ntBASIC4.99□□□□□ -1.61
CCDC9Q9Y3X0 ACTR3BP6-201ENST00000422332 1241 ntBASIC4.99□□□□□ -1.61
CCDC9Q9Y3X0 AL024508.1-201ENST00000432477 505 ntTSL 2 BASIC4.99□□□□□ -1.61
CCDC9Q9Y3X0 HMGN2P10-201ENST00000448085 265 ntBASIC4.99□□□□□ -1.61
CCDC9Q9Y3X0 RPS26P3-201ENST00000470205 348 ntBASIC4.99□□□□□ -1.61
CCDC9Q9Y3X0 AC090543.2-201ENST00000483963 348 ntBASIC4.99□□□□□ -1.61
CCDC9Q9Y3X0 AC004057.1-201ENST00000485827 348 ntBASIC4.99□□□□□ -1.61
CCDC9Q9Y3X0 AC020703.1-201ENST00000505051 521 ntTSL 3 BASIC4.99□□□□□ -1.61
CCDC9Q9Y3X0 AC018710.1-201ENST00000506509 158 ntBASIC4.99□□□□□ -1.61
CCDC9Q9Y3X0 AC145146.2-202ENST00000508118 326 ntTSL 3 BASIC4.99□□□□□ -1.61
CCDC9Q9Y3X0 AC024022.1-202ENST00000508911 394 ntTSL 2 BASIC4.99□□□□□ -1.61
Retrieved 100 of 98,524 protein–RNA pairs in 93.2 ms