Protein–RNA interactions for Protein: Q9UK41

VPS28, Vacuolar protein sorting-associated protein 28 homolog, humanhuman

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28Q9UK41 MYL8P-204ENST00000431574 518 ntBASIC3.04□□□□□ -1.92
VPS28Q9UK41 PCYT1B-AS1-201ENST00000432626 275 ntTSL 2 BASIC3.04□□□□□ -1.92
VPS28Q9UK41 Z83846.1-201ENST00000446798 265 ntBASIC3.04□□□□□ -1.92
VPS28Q9UK41 AP000477.2-201ENST00000447405 778 ntTSL 3 BASIC3.04□□□□□ -1.92
VPS28Q9UK41 NIPA2P5-201ENST00000452282 464 ntBASIC3.04□□□□□ -1.92
VPS28Q9UK41 SLC16A12-AS1-202ENST00000454270 478 ntTSL 2 BASIC3.04□□□□□ -1.92
VPS28Q9UK41 AC233279.1-201ENST00000455300 423 ntBASIC3.04□□□□□ -1.92
VPS28Q9UK41 AC107626.1-201ENST00000471084 183 ntBASIC3.04□□□□□ -1.92
VPS28Q9UK41 RPS3AP14-201ENST00000483907 780 ntBASIC3.04□□□□□ -1.92
VPS28Q9UK41 AC104304.1-201ENST00000505797 291 ntAPPRIS P1 TSL 3 BASIC3.04□□□□□ -1.92
VPS28Q9UK41 SCARNA17.1-201ENST00000516211 143 ntBASIC3.04□□□□□ -1.92
VPS28Q9UK41 SCARNA17.2-201ENST00000516334 143 ntBASIC3.04□□□□□ -1.92
VPS28Q9UK41 AC113145.1-201ENST00000522408 412 ntTSL 5 BASIC3.04□□□□□ -1.92
VPS28Q9UK41 AC025871.1-201ENST00000523935 443 ntTSL 2 BASIC3.04□□□□□ -1.92
VPS28Q9UK41 IL18-204ENST00000528832 795 ntAPPRIS P3 TSL 3 BASIC3.04□□□□□ -1.92
VPS28Q9UK41 RANP3-201ENST00000530970 276 ntBASIC3.04□□□□□ -1.92
VPS28Q9UK41 GNG2-205ENST00000554736 569 ntAPPRIS P1 TSL 4 BASIC3.04□□□□□ -1.92
VPS28Q9UK41 CYCSP39-201ENST00000565821 309 ntBASIC3.04□□□□□ -1.92
VPS28Q9UK41 MIR4528-201ENST00000577763 90 ntBASIC3.04□□□□□ -1.92
VPS28Q9UK41 AC103810.1-201ENST00000579873 453 ntBASIC3.04□□□□□ -1.92
VPS28Q9UK41 OR1M4P-201ENST00000589199 287 ntBASIC3.04□□□□□ -1.92
VPS28Q9UK41 AC119751.7-201ENST00000600494 245 ntBASIC3.04□□□□□ -1.92
VPS28Q9UK41 BX546450.2-201ENST00000602419 435 ntTSL 5 BASIC3.04□□□□□ -1.92
VPS28Q9UK41 AC012119.1-201ENST00000603184 222 ntBASIC3.04□□□□□ -1.92
VPS28Q9UK41 AC126118.1-201ENST00000607744 628 ntBASIC3.04□□□□□ -1.92
VPS28Q9UK41 SCARNA17.4-201ENST00000614296 143 ntBASIC3.04□□□□□ -1.92
VPS28Q9UK41 MIR6134-201ENST00000617606 109 ntBASIC3.04□□□□□ -1.92
VPS28Q9UK41 AC093648.1-201ENST00000623546 606 ntBASIC3.04□□□□□ -1.92
VPS28Q9UK41 AC090582.1-201ENST00000636321 199 ntBASIC3.04□□□□□ -1.92
VPS28Q9UK41 MIR7515-201ENST00000637837 67 ntBASIC3.04□□□□□ -1.92
VPS28Q9UK41 CCDC66-201ENST00000326595 3027 ntAPPRIS P3 TSL 1 (best) BASIC3.04□□□□□ -1.92
VPS28Q9UK41 MUM1L1-203ENST00000372552 3957 ntAPPRIS P1 TSL 5 BASIC3.04□□□□□ -1.92
VPS28Q9UK41 NEBL-202ENST00000377122 9216 ntTSL 1 (best) BASIC3.03□□□□□ -1.92
VPS28Q9UK41 AL390237.1-201ENST00000404226 1415 ntBASIC3.03□□□□□ -1.92
VPS28Q9UK41 AC004520.1-201ENST00000608362 1413 ntBASIC3.03□□□□□ -1.92
VPS28Q9UK41 ASNSP3-201ENST00000451989 1306 ntBASIC3.03□□□□□ -1.92
VPS28Q9UK41 SNORD56.5-201ENST00000364281 72 ntBASIC3.03□□□□□ -1.92
VPS28Q9UK41 RNU6-1180P-201ENST00000364935 107 ntBASIC3.03□□□□□ -1.92
VPS28Q9UK41 EEF1E1-201ENST00000379715 1077 ntAPPRIS P1 TSL 1 (best) BASIC3.03□□□□□ -1.92
VPS28Q9UK41 Z98749.2-208ENST00000381646 500 ntBASIC3.03□□□□□ -1.92
VPS28Q9UK41 FO393413.1-201ENST00000402892 195 ntBASIC3.03□□□□□ -1.92
VPS28Q9UK41 EEF1A1P41-201ENST00000414667 207 ntBASIC3.03□□□□□ -1.92
VPS28Q9UK41 ELF3-AS1-201ENST00000415582 500 ntTSL 2 BASIC3.03□□□□□ -1.92
VPS28Q9UK41 RBM6-203ENST00000421682 684 ntTSL 2 BASIC3.03□□□□□ -1.92
VPS28Q9UK41 MTCO2P34-201ENST00000421994 607 ntBASIC3.03□□□□□ -1.92
VPS28Q9UK41 AC026355.1-201ENST00000423466 587 ntTSL 5 BASIC3.03□□□□□ -1.92
VPS28Q9UK41 AL109947.1-201ENST00000423747 382 ntTSL 2 BASIC3.03□□□□□ -1.92
VPS28Q9UK41 LINC01351-201ENST00000424735 526 ntTSL 2 BASIC3.03□□□□□ -1.92
VPS28Q9UK41 RPS15AP7-201ENST00000439294 405 ntBASIC3.03□□□□□ -1.92
VPS28Q9UK41 MTCO1P19-201ENST00000443487 500 ntBASIC3.03□□□□□ -1.92
VPS28Q9UK41 AL360221.1-201ENST00000445989 335 ntBASIC3.03□□□□□ -1.92
VPS28Q9UK41 AC079448.1-201ENST00000449377 373 ntBASIC3.03□□□□□ -1.92
VPS28Q9UK41 LINC00571-203ENST00000454060 525 ntTSL 3 BASIC3.03□□□□□ -1.92
VPS28Q9UK41 AC016751.1-201ENST00000458254 306 ntTSL 3 BASIC3.03□□□□□ -1.92
VPS28Q9UK41 AP004217.1-201ENST00000480579 346 ntBASIC3.03□□□□□ -1.92
VPS28Q9UK41 AC083906.5-201ENST00000503722 328 ntBASIC3.03□□□□□ -1.92
VPS28Q9UK41 AC008700.1-202ENST00000513657 468 ntTSL 5 BASIC3.03□□□□□ -1.92
VPS28Q9UK41 AC139720.2-201ENST00000514766 440 ntTSL 2 BASIC3.03□□□□□ -1.92
VPS28Q9UK41 SCGB1D5P-201ENST00000515134 247 ntBASIC3.03□□□□□ -1.92
VPS28Q9UK41 RNU6-430P-201ENST00000517078 107 ntBASIC3.03□□□□□ -1.92
VPS28Q9UK41 MTCO2P4-201ENST00000517968 247 ntBASIC3.03□□□□□ -1.92
VPS28Q9UK41 COX6CP5-201ENST00000527162 228 ntBASIC3.03□□□□□ -1.92
VPS28Q9UK41 AC008083.3-201ENST00000547777 329 ntTSL 3 BASIC3.03□□□□□ -1.92
VPS28Q9UK41 AC107016.2-201ENST00000547968 190 ntBASIC3.03□□□□□ -1.92
VPS28Q9UK41 AC073591.1-201ENST00000552736 597 ntTSL 3 BASIC3.03□□□□□ -1.92
VPS28Q9UK41 LINC00933-203ENST00000559812 219 ntBASIC3.03□□□□□ -1.92
VPS28Q9UK41 PIGPP4-201ENST00000584447 307 ntBASIC3.03□□□□□ -1.92
VPS28Q9UK41 AC008521.1-201ENST00000587471 187 ntBASIC3.03□□□□□ -1.92
VPS28Q9UK41 RSL24D1P11-201ENST00000591045 491 ntBASIC3.03□□□□□ -1.92
VPS28Q9UK41 AC005261.5-201ENST00000596280 355 ntBASIC3.03□□□□□ -1.92
VPS28Q9UK41 AC005332.10-201ENST00000612725 619 ntBASIC3.03□□□□□ -1.92
VPS28Q9UK41 AC099842.1-201ENST00000619919 596 ntBASIC3.03□□□□□ -1.92
VPS28Q9UK41 PROX1-AS1-244ENST00000630355 599 ntTSL 5 BASIC3.03□□□□□ -1.92
VPS28Q9UK41 AL137790.1-201ENST00000634283 177 ntBASIC3.03□□□□□ -1.92
VPS28Q9UK41 LRRC77P-213ENST00000637727 880 ntBASIC3.03□□□□□ -1.92
VPS28Q9UK41 AC004944.1-201ENST00000517807 3059 ntBASIC3.03□□□□□ -1.92
VPS28Q9UK41 CACNB4-228ENST00000636598 7808 ntTSL 5 BASIC3.03□□□□□ -1.93
VPS28Q9UK41 NBPF20-202ENST00000392971 18450 ntAPPRIS P2 TSL 5 BASIC3.02□□□□□ -1.93
VPS28Q9UK41 KBTBD3-207ENST00000534815 3396 ntTSL 5 BASIC3.02□□□□□ -1.93
VPS28Q9UK41 CEP57L1-203ENST00000368970 1680 ntAPPRIS ALT2 TSL 5 BASIC3.02□□□□□ -1.93
VPS28Q9UK41 CDC27P3-201ENST00000635418 1910 ntBASIC3.02□□□□□ -1.93
VPS28Q9UK41 MDM2-207ENST00000360430 891 ntTSL 1 (best) BASIC3.02□□□□□ -1.93
VPS28Q9UK41 MDM4-202ENST00000367180 547 ntTSL 3 BASIC3.02□□□□□ -1.93
VPS28Q9UK41 RNU6-1083P-201ENST00000384022 107 ntBASIC3.02□□□□□ -1.93
VPS28Q9UK41 U3.26-201ENST00000391236 204 ntBASIC3.02□□□□□ -1.93
VPS28Q9UK41 AC133106.1-201ENST00000419029 397 ntTSL 3 BASIC3.02□□□□□ -1.93
VPS28Q9UK41 CALM2P2-201ENST00000428512 440 ntBASIC3.02□□□□□ -1.93
VPS28Q9UK41 SETP8-201ENST00000435341 628 ntBASIC3.02□□□□□ -1.93
VPS28Q9UK41 AC092001.1-201ENST00000453012 261 ntBASIC3.02□□□□□ -1.93
VPS28Q9UK41 AL441989.1-201ENST00000454204 382 ntTSL 3 BASIC3.02□□□□□ -1.93
VPS28Q9UK41 BTF3P15-201ENST00000455606 336 ntBASIC3.02□□□□□ -1.93
VPS28Q9UK41 AC022364.2-201ENST00000457963 554 ntBASIC3.02□□□□□ -1.93
VPS28Q9UK41 RPL23AP70-201ENST00000483361 460 ntBASIC3.02□□□□□ -1.93
VPS28Q9UK41 RN7SL633P-201ENST00000488974 297 ntBASIC3.02□□□□□ -1.93
VPS28Q9UK41 GZMAP1-201ENST00000503054 631 ntBASIC3.02□□□□□ -1.93
VPS28Q9UK41 RBBP4P6-201ENST00000508098 202 ntBASIC3.02□□□□□ -1.93
VPS28Q9UK41 AC025524.1-201ENST00000518489 606 ntTSL 4 BASIC3.02□□□□□ -1.93
VPS28Q9UK41 AC069120.1-201ENST00000521623 379 ntTSL 3 BASIC3.02□□□□□ -1.93
VPS28Q9UK41 AC022695.3-201ENST00000523385 478 ntTSL 3 BASIC3.02□□□□□ -1.93
VPS28Q9UK41 AC090023.1-201ENST00000545750 443 ntTSL 3 BASIC3.02□□□□□ -1.93
Retrieved 100 of 98,524 protein–RNA pairs in 118.1 ms