Protein–RNA interactions for Protein: Q9H1J1

UPF3A, Regulator of nonsense transcripts 3A, humanhuman

Known RBP Predictions only

Length 476 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3AQ9H1J1 AC133104.1-201ENST00000429100 218 ntBASIC2.87□□□□□ -1.95
UPF3AQ9H1J1 AC005094.1-201ENST00000440420 368 ntBASIC2.87□□□□□ -1.95
UPF3AQ9H1J1 AC011816.1-201ENST00000441346 546 ntBASIC2.87□□□□□ -1.95
UPF3AQ9H1J1 FDX1P2-201ENST00000450769 375 ntBASIC2.87□□□□□ -1.95
UPF3AQ9H1J1 GSTA11P-201ENST00000452866 669 ntBASIC2.87□□□□□ -1.95
UPF3AQ9H1J1 TTTY8B-202ENST00000455570 518 ntTSL 1 (best) BASIC2.87□□□□□ -1.95
UPF3AQ9H1J1 PCCA-AS1-203ENST00000455958 356 ntTSL 3 BASIC2.87□□□□□ -1.95
UPF3AQ9H1J1 AC013267.1-201ENST00000458227 267 ntBASIC2.87□□□□□ -1.95
UPF3AQ9H1J1 AC126182.1-201ENST00000478134 357 ntBASIC2.87□□□□□ -1.95
UPF3AQ9H1J1 AC019235.1-201ENST00000503847 207 ntBASIC2.87□□□□□ -1.95
UPF3AQ9H1J1 AC004062.1-201ENST00000509926 645 ntBASIC2.87□□□□□ -1.95
UPF3AQ9H1J1 CSN1S2AP-204ENST00000512167 671 ntTSL 3 BASIC2.87□□□□□ -1.95
UPF3AQ9H1J1 AC114797.1-201ENST00000514003 728 ntBASIC2.87□□□□□ -1.95
UPF3AQ9H1J1 SCARNA24.1-201ENST00000516465 137 ntBASIC2.87□□□□□ -1.95
UPF3AQ9H1J1 RNU6-64P-201ENST00000517119 105 ntBASIC2.87□□□□□ -1.95
UPF3AQ9H1J1 SNORA31.22-201ENST00000517204 135 ntBASIC2.87□□□□□ -1.95
UPF3AQ9H1J1 AC023200.1-201ENST00000519660 651 ntTSL 3 BASIC2.87□□□□□ -1.95
UPF3AQ9H1J1 AL358937.1-201ENST00000524512 336 ntTSL 2 BASIC2.87□□□□□ -1.95
UPF3AQ9H1J1 AC010175.1-201ENST00000538219 224 ntTSL 5 BASIC2.87□□□□□ -1.95
UPF3AQ9H1J1 LINC01290-201ENST00000566787 502 ntTSL 2 BASIC2.87□□□□□ -1.95
UPF3AQ9H1J1 MTATP6P3-201ENST00000581686 676 ntBASIC2.87□□□□□ -1.95
UPF3AQ9H1J1 ZNF788-206ENST00000596883 692 ntTSL 3 BASIC2.87□□□□□ -1.95
UPF3AQ9H1J1 MIR98-201ENST00000606724 119 ntBASIC2.87□□□□□ -1.95
UPF3AQ9H1J1 LINC01419-201ENST00000522365 1521 ntTSL 1 (best) BASIC2.87□□□□□ -1.95
UPF3AQ9H1J1 SYTL2-230ENST00000634661 6672 ntTSL 5 BASIC2.87□□□□□ -1.95
UPF3AQ9H1J1 SIRT1-202ENST00000403579 3333 ntTSL 1 (best) BASIC2.86□□□□□ -1.95
UPF3AQ9H1J1 CHD9-218ENST00000566029 13110 ntAPPRIS P1 TSL 1 (best) BASIC2.86□□□□□ -1.95
UPF3AQ9H1J1 WDR3-201ENST00000349139 9974 ntAPPRIS P1 TSL 1 (best) BASIC2.86□□□□□ -1.95
UPF3AQ9H1J1 TMEM59-205ENST00000371348 1911 ntTSL 1 (best) BASIC2.86□□□□□ -1.95
UPF3AQ9H1J1 Y_RNA.22-201ENST00000362492 102 ntBASIC2.86□□□□□ -1.95
UPF3AQ9H1J1 Y_RNA.296-201ENST00000364930 108 ntBASIC2.86□□□□□ -1.95
UPF3AQ9H1J1 SNORA20.2-201ENST00000383922 131 ntBASIC2.86□□□□□ -1.95
UPF3AQ9H1J1 Y_RNA.409-201ENST00000383990 98 ntBASIC2.86□□□□□ -1.95
UPF3AQ9H1J1 RNU6-882P-201ENST00000391025 103 ntBASIC2.86□□□□□ -1.95
UPF3AQ9H1J1 MTCO3P40-201ENST00000392516 676 ntBASIC2.86□□□□□ -1.95
UPF3AQ9H1J1 RNU4-55P-201ENST00000410731 137 ntBASIC2.86□□□□□ -1.95
UPF3AQ9H1J1 RNU6-516P-201ENST00000411381 104 ntBASIC2.86□□□□□ -1.95
UPF3AQ9H1J1 Z98742.3-201ENST00000418637 326 ntBASIC2.86□□□□□ -1.95
UPF3AQ9H1J1 AL137014.1-201ENST00000420490 1226 ntBASIC2.86□□□□□ -1.95
UPF3AQ9H1J1 PPP1R11P2-201ENST00000423543 382 ntBASIC2.86□□□□□ -1.95
UPF3AQ9H1J1 PCDH9-AS1-201ENST00000430861 532 ntTSL 2 BASIC2.86□□□□□ -1.95
UPF3AQ9H1J1 RPS29P21-201ENST00000496272 170 ntBASIC2.86□□□□□ -1.95
UPF3AQ9H1J1 AL627309.4-201ENST00000496488 457 ntTSL 5 BASIC2.86□□□□□ -1.95
UPF3AQ9H1J1 AC108727.1-201ENST00000513802 393 ntTSL 2 BASIC2.86□□□□□ -1.95
UPF3AQ9H1J1 AC113145.1-201ENST00000522408 412 ntTSL 5 BASIC2.86□□□□□ -1.95
UPF3AQ9H1J1 AC090023.1-201ENST00000545750 443 ntTSL 3 BASIC2.86□□□□□ -1.95
UPF3AQ9H1J1 AC079584.2-201ENST00000548756 515 ntTSL 3 BASIC2.86□□□□□ -1.95
UPF3AQ9H1J1 ARL2BPP2-201ENST00000550907 489 ntBASIC2.86□□□□□ -1.95
UPF3AQ9H1J1 AC136619.2-201ENST00000563361 631 ntBASIC2.86□□□□□ -1.95
UPF3AQ9H1J1 AC026771.1-201ENST00000564672 415 ntTSL 2 BASIC2.86□□□□□ -1.95
UPF3AQ9H1J1 AC005909.1-201ENST00000577835 755 ntTSL 3 BASIC2.86□□□□□ -1.95
UPF3AQ9H1J1 AC069061.2-202ENST00000580280 357 ntTSL 3 BASIC2.86□□□□□ -1.95
UPF3AQ9H1J1 AC098848.1-201ENST00000588466 567 ntTSL 4 BASIC2.86□□□□□ -1.95
UPF3AQ9H1J1 AC004908.2-201ENST00000609090 574 ntBASIC2.86□□□□□ -1.95
UPF3AQ9H1J1 AC002076.2-201ENST00000617362 122 ntBASIC2.86□□□□□ -1.95
UPF3AQ9H1J1 AL603758.1-201ENST00000618654 241 ntBASIC2.86□□□□□ -1.95
UPF3AQ9H1J1 WFDC11-203ENST00000618797 561 ntAPPRIS P1 TSL 5 BASIC2.86□□□□□ -1.95
UPF3AQ9H1J1 MIR6130-201ENST00000619419 109 ntBASIC2.86□□□□□ -1.95
UPF3AQ9H1J1 AL359880.1-201ENST00000621879 266 ntBASIC2.86□□□□□ -1.95
UPF3AQ9H1J1 MIR7843-201ENST00000622274 79 ntBASIC2.86□□□□□ -1.95
UPF3AQ9H1J1 MIR6733-201ENST00000635723 61 ntBASIC2.86□□□□□ -1.95
UPF3AQ9H1J1 PEX3-201ENST00000367591 1969 ntAPPRIS P1 TSL 1 (best) BASIC2.86□□□□□ -1.95
UPF3AQ9H1J1 ATXN3L-201ENST00000380622 2164 ntAPPRIS P1 BASIC2.85□□□□□ -1.95
UPF3AQ9H1J1 CR848007.1-201ENST00000442354 1699 ntBASIC2.85□□□□□ -1.95
UPF3AQ9H1J1 PSG1-205ENST00000595124 1692 ntTSL 2 BASIC2.85□□□□□ -1.95
UPF3AQ9H1J1 HELLS-201ENST00000239026 2740 ntTSL 5 BASIC2.85□□□□□ -1.95
UPF3AQ9H1J1 HSFY1-202ENST00000309834 1038 ntAPPRIS ALT2 TSL 1 (best) BASIC2.85□□□□□ -1.95
UPF3AQ9H1J1 C5orf46-201ENST00000318315 506 ntAPPRIS P2 TSL 1 (best) BASIC2.85□□□□□ -1.95
UPF3AQ9H1J1 HSFY2-202ENST00000344884 1038 ntAPPRIS ALT2 TSL 1 (best) BASIC2.85□□□□□ -1.95
UPF3AQ9H1J1 AKAP14-203ENST00000371425 793 ntAPPRIS ALT2 TSL 5 BASIC2.85□□□□□ -1.95
UPF3AQ9H1J1 RNU6-1027P-201ENST00000383998 107 ntBASIC2.85□□□□□ -1.95
UPF3AQ9H1J1 MIR181B1-201ENST00000385240 110 ntBASIC2.85□□□□□ -1.95
UPF3AQ9H1J1 SNORA26.7-201ENST00000391288 122 ntBASIC2.85□□□□□ -1.95
UPF3AQ9H1J1 AC068050.1-201ENST00000394891 380 ntBASIC2.85□□□□□ -1.95
UPF3AQ9H1J1 RNU2-43P-201ENST00000410306 190 ntBASIC2.85□□□□□ -1.95
UPF3AQ9H1J1 MTCO1P39-201ENST00000426148 480 ntBASIC2.85□□□□□ -1.95
UPF3AQ9H1J1 AL162414.1-201ENST00000426204 744 ntTSL 3 BASIC2.85□□□□□ -1.95
UPF3AQ9H1J1 MTATP6P4-201ENST00000427725 675 ntBASIC2.85□□□□□ -1.95
UPF3AQ9H1J1 RPL23AP30-201ENST00000432419 501 ntBASIC2.85□□□□□ -1.95
UPF3AQ9H1J1 MTND3P21-201ENST00000433774 331 ntBASIC2.85□□□□□ -1.95
UPF3AQ9H1J1 UBE2V1P8-201ENST00000437166 265 ntBASIC2.85□□□□□ -1.95
UPF3AQ9H1J1 RNU7-59P-201ENST00000459101 61 ntBASIC2.85□□□□□ -1.95
UPF3AQ9H1J1 MTCO2P29-201ENST00000465212 189 ntBASIC2.85□□□□□ -1.95
UPF3AQ9H1J1 AL121769.1-201ENST00000469473 401 ntBASIC2.85□□□□□ -1.95
UPF3AQ9H1J1 UBE2Q2P9-201ENST00000490086 202 ntBASIC2.85□□□□□ -1.95
UPF3AQ9H1J1 RPS15AP36-201ENST00000492022 382 ntBASIC2.85□□□□□ -1.95
UPF3AQ9H1J1 AC091906.1-201ENST00000511310 391 ntTSL 2 BASIC2.85□□□□□ -1.95
UPF3AQ9H1J1 AC010280.1-201ENST00000515199 340 ntTSL 2 BASIC2.85□□□□□ -1.95
UPF3AQ9H1J1 RNA5SP76-201ENST00000516277 87 ntBASIC2.85□□□□□ -1.95
UPF3AQ9H1J1 RNU6-314P-201ENST00000516574 104 ntBASIC2.85□□□□□ -1.95
UPF3AQ9H1J1 NDST1-AS1-201ENST00000519040 368 ntTSL 2 BASIC2.85□□□□□ -1.95
UPF3AQ9H1J1 AC022690.1-201ENST00000526681 550 ntBASIC2.85□□□□□ -1.95
UPF3AQ9H1J1 AP003072.2-201ENST00000527756 676 ntBASIC2.85□□□□□ -1.95
UPF3AQ9H1J1 AC087318.1-201ENST00000536786 389 ntTSL 3 BASIC2.85□□□□□ -1.95
UPF3AQ9H1J1 MGST1-215ENST00000540056 546 ntTSL 3 BASIC2.85□□□□□ -1.95
UPF3AQ9H1J1 AC007619.1-201ENST00000544086 412 ntTSL 5 BASIC2.85□□□□□ -1.95
UPF3AQ9H1J1 AL022099.1-201ENST00000604551 712 ntBASIC2.85□□□□□ -1.95
UPF3AQ9H1J1 AC091965.1-202ENST00000607662 397 ntTSL 3 BASIC2.85□□□□□ -1.95
UPF3AQ9H1J1 AL161734.1-201ENST00000609720 557 ntBASIC2.85□□□□□ -1.95
UPF3AQ9H1J1 AC090970.3-201ENST00000612566 866 ntBASIC2.85□□□□□ -1.95
Retrieved 100 of 98,524 protein–RNA pairs in 112.8 ms