Protein–RNA interactions for Protein: Q9BQI4

CCDC3, Coiled-coil domain-containing protein 3, humanhuman

Predictions only

Length 270 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3Q9BQI4 AC080125.1-201ENST00000414888 684 ntBASIC2.79□□□□□ -1.96
CCDC3Q9BQI4 NDUFB4P5-201ENST00000415445 361 ntBASIC2.79□□□□□ -1.96
CCDC3Q9BQI4 AC133106.1-201ENST00000419029 397 ntTSL 3 BASIC2.79□□□□□ -1.96
CCDC3Q9BQI4 AC073311.1-201ENST00000420146 505 ntTSL 5 BASIC2.79□□□□□ -1.96
CCDC3Q9BQI4 MTCYBP5-201ENST00000423752 1135 ntBASIC2.79□□□□□ -1.96
CCDC3Q9BQI4 AC114808.2-201ENST00000428335 536 ntTSL 4 BASIC2.79□□□□□ -1.96
CCDC3Q9BQI4 AL358934.1-201ENST00000432346 324 ntBASIC2.79□□□□□ -1.96
CCDC3Q9BQI4 AC005160.1-201ENST00000432405 381 ntTSL 3 BASIC2.79□□□□□ -1.96
CCDC3Q9BQI4 LINC01807-201ENST00000432481 676 ntTSL 3 BASIC2.79□□□□□ -1.96
CCDC3Q9BQI4 SNRPEP9-201ENST00000436794 238 ntBASIC2.79□□□□□ -1.96
CCDC3Q9BQI4 AL714022.1-201ENST00000439897 151 ntBASIC2.79□□□□□ -1.96
CCDC3Q9BQI4 DDX3P2-201ENST00000446138 111 ntBASIC2.79□□□□□ -1.96
CCDC3Q9BQI4 AC013269.3-201ENST00000450486 444 ntTSL 3 BASIC2.79□□□□□ -1.96
CCDC3Q9BQI4 AC108938.1-201ENST00000451204 136 ntBASIC2.79□□□□□ -1.96
CCDC3Q9BQI4 NIPA2P5-201ENST00000452282 464 ntBASIC2.79□□□□□ -1.96
CCDC3Q9BQI4 AL109933.2-201ENST00000452651 260 ntBASIC2.79□□□□□ -1.96
CCDC3Q9BQI4 AL139260.1-202ENST00000456813 441 ntTSL 3 BASIC2.79□□□□□ -1.96
CCDC3Q9BQI4 AC092798.1-201ENST00000458542 409 ntBASIC2.79□□□□□ -1.96
CCDC3Q9BQI4 GMFBP1-201ENST00000467831 427 ntBASIC2.79□□□□□ -1.96
CCDC3Q9BQI4 MCCC1-AS1-201ENST00000471731 765 ntTSL 5 BASIC2.79□□□□□ -1.96
CCDC3Q9BQI4 LINC01487-202ENST00000490497 423 ntTSL 3 BASIC2.79□□□□□ -1.96
CCDC3Q9BQI4 LINC02100-201ENST00000512978 238 ntTSL 3 BASIC2.79□□□□□ -1.96
CCDC3Q9BQI4 AC022360.2-202ENST00000517308 407 ntTSL 3 BASIC2.79□□□□□ -1.96
CCDC3Q9BQI4 PKIA-203ENST00000518467 588 ntAPPRIS P1 TSL 1 (best) BASIC2.79□□□□□ -1.96
CCDC3Q9BQI4 AC104211.1-202ENST00000521307 866 ntTSL 3 BASIC2.79□□□□□ -1.96
CCDC3Q9BQI4 AP001646.1-201ENST00000527936 915 ntBASIC2.79□□□□□ -1.96
CCDC3Q9BQI4 TTN-AS1-212ENST00000582847 1036 ntTSL 5 BASIC2.79□□□□□ -1.96
CCDC3Q9BQI4 ZRANB2-AS2-213ENST00000591654 719 ntTSL 5 BASIC2.79□□□□□ -1.96
CCDC3Q9BQI4 NRBF2P5-201ENST00000603087 788 ntBASIC2.79□□□□□ -1.96
CCDC3Q9BQI4 BNIP3P9-201ENST00000603714 553 ntBASIC2.79□□□□□ -1.96
CCDC3Q9BQI4 CERS6-AS1-209ENST00000609766 642 ntTSL 5 BASIC2.79□□□□□ -1.96
CCDC3Q9BQI4 AL359547.2-201ENST00000615810 418 ntBASIC2.79□□□□□ -1.96
CCDC3Q9BQI4 AP003122.6-201ENST00000623831 495 ntBASIC2.79□□□□□ -1.96
CCDC3Q9BQI4 GCNT4-201ENST00000322348 5554 ntAPPRIS P1 BASIC2.79□□□□□ -1.96
CCDC3Q9BQI4 ANKRD36BP1-201ENST00000358576 1779 ntBASIC2.79□□□□□ -1.96
CCDC3Q9BQI4 ARHGAP28-204ENST00000419673 5492 ntAPPRIS P2 TSL 1 (best) BASIC2.79□□□□□ -1.96
CCDC3Q9BQI4 PRKG1-205ENST00000401604 5922 ntTSL 5 BASIC2.78□□□□□ -1.96
CCDC3Q9BQI4 AC108206.1-201ENST00000570186 4159 ntBASIC2.78□□□□□ -1.96
CCDC3Q9BQI4 ZNF626-204ENST00000612591 4404 ntAPPRIS P1 TSL 5 BASIC2.78□□□□□ -1.96
CCDC3Q9BQI4 RNU4-75P-201ENST00000364621 146 ntBASIC2.78□□□□□ -1.96
CCDC3Q9BQI4 RN7SKP226-201ENST00000364912 300 ntBASIC2.78□□□□□ -1.96
CCDC3Q9BQI4 Y_RNA.296-201ENST00000364930 108 ntBASIC2.78□□□□□ -1.96
CCDC3Q9BQI4 RNU4-48P-201ENST00000365559 182 ntBASIC2.78□□□□□ -1.96
CCDC3Q9BQI4 RNU6-641P-201ENST00000384006 107 ntBASIC2.78□□□□□ -1.96
CCDC3Q9BQI4 SNORA24.1-201ENST00000384401 135 ntBASIC2.78□□□□□ -1.96
CCDC3Q9BQI4 RPL21P3-201ENST00000395517 478 ntBASIC2.78□□□□□ -1.96
CCDC3Q9BQI4 AL592148.1-201ENST00000413568 445 ntBASIC2.78□□□□□ -1.96
CCDC3Q9BQI4 MTATP6P18-201ENST00000417994 673 ntBASIC2.78□□□□□ -1.96
CCDC3Q9BQI4 AC063976.3-201ENST00000426849 329 ntBASIC2.78□□□□□ -1.96
CCDC3Q9BQI4 MTCO2P19-201ENST00000427513 598 ntBASIC2.78□□□□□ -1.96
CCDC3Q9BQI4 CALM2P2-201ENST00000428512 440 ntBASIC2.78□□□□□ -1.96
CCDC3Q9BQI4 AC073464.1-201ENST00000429823 534 ntBASIC2.78□□□□□ -1.96
CCDC3Q9BQI4 GPM6BP2-201ENST00000432046 144 ntBASIC2.78□□□□□ -1.96
CCDC3Q9BQI4 RPL23AP30-201ENST00000432419 501 ntBASIC2.78□□□□□ -1.96
CCDC3Q9BQI4 AL365258.1-201ENST00000440885 247 ntTSL 3 BASIC2.78□□□□□ -1.96
CCDC3Q9BQI4 MTND1P1-201ENST00000445453 368 ntBASIC2.78□□□□□ -1.96
CCDC3Q9BQI4 AL138830.2-202ENST00000446358 786 ntTSL 2 BASIC2.78□□□□□ -1.96
CCDC3Q9BQI4 GPM6BP1-201ENST00000446387 144 ntBASIC2.78□□□□□ -1.96
CCDC3Q9BQI4 AL356010.1-201ENST00000456364 102 ntBASIC2.78□□□□□ -1.96
CCDC3Q9BQI4 AC146507.2-201ENST00000460608 476 ntBASIC2.78□□□□□ -1.96
CCDC3Q9BQI4 AC082651.2-201ENST00000496833 166 ntBASIC2.78□□□□□ -1.96
CCDC3Q9BQI4 AC107401.1-201ENST00000503426 685 ntBASIC2.78□□□□□ -1.96
CCDC3Q9BQI4 AC098591.2-201ENST00000510152 315 ntBASIC2.78□□□□□ -1.96
CCDC3Q9BQI4 RN7SKP43-201ENST00000516173 320 ntBASIC2.78□□□□□ -1.96
CCDC3Q9BQI4 RNU6-685P-201ENST00000517088 95 ntBASIC2.78□□□□□ -1.96
CCDC3Q9BQI4 DNAJC8P1-201ENST00000554535 372 ntBASIC2.78□□□□□ -1.96
CCDC3Q9BQI4 AC010653.1-201ENST00000571108 881 ntBASIC2.78□□□□□ -1.96
CCDC3Q9BQI4 AC127024.3-201ENST00000582841 460 ntTSL 3 BASIC2.78□□□□□ -1.96
CCDC3Q9BQI4 AC012557.2-201ENST00000605919 418 ntBASIC2.78□□□□□ -1.96
CCDC3Q9BQI4 AL121992.2-201ENST00000606262 256 ntBASIC2.78□□□□□ -1.96
CCDC3Q9BQI4 AC022893.3-201ENST00000607665 437 ntBASIC2.78□□□□□ -1.96
CCDC3Q9BQI4 DUSP12P1-201ENST00000612874 516 ntBASIC2.78□□□□□ -1.96
CCDC3Q9BQI4 AL596220.1-201ENST00000622121 542 ntTSL 4 BASIC2.78□□□□□ -1.96
CCDC3Q9BQI4 AC093648.1-201ENST00000623546 606 ntBASIC2.78□□□□□ -1.96
CCDC3Q9BQI4 ZRANB2-AS2-222ENST00000625045 1014 ntTSL 5 BASIC2.78□□□□□ -1.96
CCDC3Q9BQI4 U2.21-201ENST00000637295 81 ntBASIC2.78□□□□□ -1.96
CCDC3Q9BQI4 AMY2B-208ENST00000610648 1736 ntAPPRIS P1 TSL 1 (best) BASIC2.78□□□□□ -1.96
CCDC3Q9BQI4 ABCG2-204ENST00000515655 4276 ntTSL 1 (best) BASIC2.78□□□□□ -1.96
CCDC3Q9BQI4 SERPINI2-202ENST00000461846 1514 ntAPPRIS P1 TSL 1 (best) BASIC2.78□□□□□ -1.97
CCDC3Q9BQI4 HMGN5-201ENST00000358130 2126 ntAPPRIS P2 TSL 2 BASIC2.77□□□□□ -1.97
CCDC3Q9BQI4 IL36B-202ENST00000327407 1052 ntAPPRIS P1 TSL 1 (best) BASIC2.77□□□□□ -1.97
CCDC3Q9BQI4 RNU6-179P-201ENST00000363350 107 ntBASIC2.77□□□□□ -1.97
CCDC3Q9BQI4 Y_RNA.159-201ENST00000363674 87 ntBASIC2.77□□□□□ -1.97
CCDC3Q9BQI4 RNU6-190P-201ENST00000384154 102 ntBASIC2.77□□□□□ -1.97
CCDC3Q9BQI4 RNU6-456P-201ENST00000384493 107 ntBASIC2.77□□□□□ -1.97
CCDC3Q9BQI4 Y_RNA.517-201ENST00000384551 106 ntBASIC2.77□□□□□ -1.97
CCDC3Q9BQI4 MIR301A-201ENST00000385261 86 ntBASIC2.77□□□□□ -1.97
CCDC3Q9BQI4 RPS4XP8-201ENST00000402039 771 ntBASIC2.77□□□□□ -1.97
CCDC3Q9BQI4 RN7SKP58-201ENST00000411010 305 ntBASIC2.77□□□□□ -1.97
CCDC3Q9BQI4 ATP13A5-AS1-201ENST00000414634 476 ntTSL 3 BASIC2.77□□□□□ -1.97
CCDC3Q9BQI4 OR51A5P-201ENST00000415429 942 ntBASIC2.77□□□□□ -1.97
CCDC3Q9BQI4 AC114491.1-201ENST00000416095 246 ntBASIC2.77□□□□□ -1.97
CCDC3Q9BQI4 SDCBPP3-201ENST00000419629 891 ntBASIC2.77□□□□□ -1.97
CCDC3Q9BQI4 ABCC5-AS1-201ENST00000422946 469 ntTSL 2 BASIC2.77□□□□□ -1.97
CCDC3Q9BQI4 AC093106.2-201ENST00000428212 385 ntBASIC2.77□□□□□ -1.97
CCDC3Q9BQI4 AC104332.2-201ENST00000429959 156 ntBASIC2.77□□□□□ -1.97
CCDC3Q9BQI4 AL591212.2-201ENST00000433923 257 ntBASIC2.77□□□□□ -1.97
CCDC3Q9BQI4 AL033504.1-204ENST00000434985 413 ntTSL 2 BASIC2.77□□□□□ -1.97
CCDC3Q9BQI4 AC009969.1-201ENST00000438726 172 ntBASIC2.77□□□□□ -1.97
CCDC3Q9BQI4 AC099566.1-201ENST00000442558 479 ntTSL 3 BASIC2.77□□□□□ -1.97
Retrieved 100 of 98,524 protein–RNA pairs in 78.9 ms