Protein–RNA interactions for Protein: Q99250

SCN2A, Sodium channel protein type 2 subunit alpha, humanhuman

Predictions only

Length 2,005 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN2AQ99250 AC082650.1-201ENST00000503542 575 ntTSL 4 BASIC2.13□□□□□ -2.07
SCN2AQ99250 AC138853.1-201ENST00000503549 823 ntBASIC2.13□□□□□ -2.07
SCN2AQ99250 AC093534.1-201ENST00000504977 132 ntBASIC2.13□□□□□ -2.07
SCN2AQ99250 AC105343.1-201ENST00000505586 358 ntTSL 3 BASIC2.13□□□□□ -2.07
SCN2AQ99250 RNU6ATAC9P-201ENST00000516210 116 ntBASIC2.13□□□□□ -2.07
SCN2AQ99250 UTP23-205ENST00000520733 369 ntTSL 3 BASIC2.13□□□□□ -2.07
SCN2AQ99250 AC060765.1-201ENST00000522776 544 ntTSL 4 BASIC2.13□□□□□ -2.07
SCN2AQ99250 PCLAF-207ENST00000559519 749 ntTSL 2 BASIC2.13□□□□□ -2.07
SCN2AQ99250 MIR3682-201ENST00000581338 84 ntBASIC2.13□□□□□ -2.07
SCN2AQ99250 AP000787.2-201ENST00000604432 568 ntBASIC2.13□□□□□ -2.07
SCN2AQ99250 AL161729.4-201ENST00000604650 476 ntBASIC2.13□□□□□ -2.07
SCN2AQ99250 AC098614.4-201ENST00000607601 462 ntBASIC2.13□□□□□ -2.07
SCN2AQ99250 AC004223.4-201ENST00000612426 332 ntBASIC2.13□□□□□ -2.07
SCN2AQ99250 SENP7-204ENST00000394085 1483 ntTSL 1 (best) BASIC2.13□□□□□ -2.07
SCN2AQ99250 LIPI-203ENST00000536861 1529 ntAPPRIS ALT2 TSL 1 (best) BASIC2.13□□□□□ -2.07
SCN2AQ99250 COPS2-203ENST00000542928 1580 ntTSL 2 BASIC2.13□□□□□ -2.07
SCN2AQ99250 OR4M1-202ENST00000641200 3493 ntAPPRIS P1 BASIC2.13□□□□□ -2.07
SCN2AQ99250 LINC01592-202ENST00000518540 2367 ntTSL 2 BASIC2.12□□□□□ -2.07
SCN2AQ99250 TEX21P-201ENST00000447107 1476 ntBASIC2.12□□□□□ -2.07
SCN2AQ99250 RNU1-39P-201ENST00000383897 165 ntBASIC2.12□□□□□ -2.07
SCN2AQ99250 SNORD21-201ENST00000383953 95 ntBASIC2.12□□□□□ -2.07
SCN2AQ99250 MRPL42P2-201ENST00000403169 426 ntBASIC2.12□□□□□ -2.07
SCN2AQ99250 LINC01797-202ENST00000433432 765 ntTSL 3 BASIC2.12□□□□□ -2.07
SCN2AQ99250 AC009961.2-201ENST00000435771 251 ntBASIC2.12□□□□□ -2.07
SCN2AQ99250 AC011816.1-201ENST00000441346 546 ntBASIC2.12□□□□□ -2.07
SCN2AQ99250 AC114485.1-201ENST00000447916 657 ntTSL 3 BASIC2.12□□□□□ -2.07
SCN2AQ99250 DPPA3P1-201ENST00000448050 469 ntBASIC2.12□□□□□ -2.07
SCN2AQ99250 UTAT33-202ENST00000449177 565 ntTSL 2 BASIC2.12□□□□□ -2.07
SCN2AQ99250 AC034226.1-201ENST00000506429 487 ntTSL 2 BASIC2.12□□□□□ -2.07
SCN2AQ99250 AC009901.1-201ENST00000506703 541 ntBASIC2.12□□□□□ -2.07
SCN2AQ99250 AC107222.1-201ENST00000510899 637 ntBASIC2.12□□□□□ -2.07
SCN2AQ99250 TTC39CP1-201ENST00000512513 755 ntBASIC2.12□□□□□ -2.07
SCN2AQ99250 AC011979.2-201ENST00000527568 352 ntBASIC2.12□□□□□ -2.07
SCN2AQ99250 AP003072.2-201ENST00000527756 676 ntBASIC2.12□□□□□ -2.07
SCN2AQ99250 OSBPL9P5-201ENST00000542581 171 ntBASIC2.12□□□□□ -2.07
SCN2AQ99250 AC078814.3-201ENST00000553036 491 ntBASIC2.12□□□□□ -2.07
SCN2AQ99250 AC010547.2-201ENST00000568523 409 ntTSL 5 BASIC2.12□□□□□ -2.07
SCN2AQ99250 MIR1273D-201ENST00000577266 86 ntBASIC2.12□□□□□ -2.07
SCN2AQ99250 MIR4448-201ENST00000584360 86 ntBASIC2.12□□□□□ -2.07
SCN2AQ99250 AL022161.1-201ENST00000604390 213 ntBASIC2.12□□□□□ -2.07
SCN2AQ99250 AC097717.1-249ENST00000608040 401 ntTSL 5 BASIC2.12□□□□□ -2.07
SCN2AQ99250 AC092192.1-201ENST00000633154 1018 ntBASIC2.12□□□□□ -2.07
SCN2AQ99250 CATSPERB-201ENST00000256343 3623 ntAPPRIS P2 TSL 1 (best) BASIC2.12□□□□□ -2.07
SCN2AQ99250 EIF2AK2-204ENST00000405334 1533 ntTSL 1 (best) BASIC2.12□□□□□ -2.07
SCN2AQ99250 ZNF519P1-201ENST00000449011 1626 ntBASIC2.12□□□□□ -2.07
SCN2AQ99250 U3.4-201ENST00000363352 213 ntBASIC2.12□□□□□ -2.07
SCN2AQ99250 RNU6-198P-201ENST00000384258 104 ntBASIC2.12□□□□□ -2.07
SCN2AQ99250 TRAJ31-201ENST00000390506 57 ntAPPRIS P1 BASIC2.12□□□□□ -2.07
SCN2AQ99250 RNU6-193P-201ENST00000410977 107 ntBASIC2.12□□□□□ -2.07
SCN2AQ99250 AL365203.2-201ENST00000423444 196 ntBASIC2.12□□□□□ -2.07
SCN2AQ99250 AC244035.3-201ENST00000428399 271 ntTSL 2 BASIC2.12□□□□□ -2.07
SCN2AQ99250 HMGB1P9-201ENST00000429856 646 ntBASIC2.12□□□□□ -2.07
SCN2AQ99250 HMGB1P18-201ENST00000438801 619 ntBASIC2.12□□□□□ -2.07
SCN2AQ99250 RGS5-217ENST00000451759 835 ntTSL 3 BASIC2.12□□□□□ -2.07
SCN2AQ99250 RPL9P6-201ENST00000492764 598 ntBASIC2.12□□□□□ -2.07
SCN2AQ99250 RPS29P21-201ENST00000496272 170 ntBASIC2.12□□□□□ -2.07
SCN2AQ99250 RNU2-10P-201ENST00000516375 211 ntBASIC2.12□□□□□ -2.07
SCN2AQ99250 RNA5SP291-201ENST00000517222 105 ntBASIC2.12□□□□□ -2.07
SCN2AQ99250 AC090572.1-201ENST00000519251 160 ntBASIC2.12□□□□□ -2.07
SCN2AQ99250 MTCYBP20-201ENST00000524239 1129 ntBASIC2.12□□□□□ -2.07
SCN2AQ99250 AP003181.2-201ENST00000528941 181 ntBASIC2.12□□□□□ -2.07
SCN2AQ99250 AC084851.1-201ENST00000529105 249 ntBASIC2.12□□□□□ -2.07
SCN2AQ99250 AP001783.1-202ENST00000534620 408 ntTSL 2 BASIC2.12□□□□□ -2.07
SCN2AQ99250 LINC02461-201ENST00000553211 836 ntTSL 3 BASIC2.12□□□□□ -2.07
SCN2AQ99250 AL445074.1-201ENST00000555362 318 ntTSL 2 BASIC2.12□□□□□ -2.07
SCN2AQ99250 AC068135.2-201ENST00000569293 1028 ntBASIC2.12□□□□□ -2.07
SCN2AQ99250 MIR3913-1-201ENST00000577744 102 ntBASIC2.12□□□□□ -2.07
SCN2AQ99250 HMGN2P15-201ENST00000585707 270 ntBASIC2.12□□□□□ -2.07
SCN2AQ99250 AC060766.3-201ENST00000591442 263 ntBASIC2.12□□□□□ -2.07
SCN2AQ99250 WISP1-OT1-201ENST00000602893 642 ntBASIC2.12□□□□□ -2.07
SCN2AQ99250 U73023.1-201ENST00000603134 700 ntBASIC2.12□□□□□ -2.07
SCN2AQ99250 HOTTIP_4.1-201ENST00000618195 165 ntBASIC2.12□□□□□ -2.07
SCN2AQ99250 CNOT1-223ENST00000628857 291 ntTSL 5 BASIC2.12□□□□□ -2.07
SCN2AQ99250 SIRT1-203ENST00000406900 3295 ntTSL 2 BASIC2.12□□□□□ -2.07
SCN2AQ99250 CEP70-211ENST00000484888 1993 ntAPPRIS P3 TSL 5 BASIC2.11□□□□□ -2.07
SCN2AQ99250 ZNF85-203ENST00000345030 1689 ntAPPRIS ALT2 TSL 5 BASIC2.11□□□□□ -2.07
SCN2AQ99250 MTND5P29-201ENST00000458676 1807 ntBASIC2.11□□□□□ -2.07
SCN2AQ99250 OR13G1-202ENST00000642119 2568 ntAPPRIS P1 BASIC2.11□□□□□ -2.07
SCN2AQ99250 U8.3-201ENST00000363321 132 ntBASIC2.11□□□□□ -2.07
SCN2AQ99250 RNU6-809P-201ENST00000384461 107 ntBASIC2.11□□□□□ -2.07
SCN2AQ99250 AL663023.1-201ENST00000412932 853 ntTSL 3 BASIC2.11□□□□□ -2.07
SCN2AQ99250 AC009518.2-201ENST00000418056 731 ntBASIC2.11□□□□□ -2.07
SCN2AQ99250 MTCO2P34-201ENST00000421994 607 ntBASIC2.11□□□□□ -2.07
SCN2AQ99250 AC007283.2-201ENST00000424739 197 ntBASIC2.11□□□□□ -2.07
SCN2AQ99250 AL590383.1-201ENST00000428602 75 ntBASIC2.11□□□□□ -2.07
SCN2AQ99250 AL162725.2-201ENST00000430545 748 ntTSL 5 BASIC2.11□□□□□ -2.07
SCN2AQ99250 INTS6L-AS1-201ENST00000430820 398 ntTSL 3 BASIC2.11□□□□□ -2.07
SCN2AQ99250 AL139289.1-201ENST00000436713 731 ntTSL 3 BASIC2.11□□□□□ -2.07
SCN2AQ99250 GHRL-208ENST00000439975 326 ntTSL 1 (best) BASIC2.11□□□□□ -2.07
SCN2AQ99250 AC090515.1-201ENST00000465295 476 ntBASIC2.11□□□□□ -2.07
SCN2AQ99250 MCCC1-AS1-201ENST00000471731 765 ntTSL 5 BASIC2.11□□□□□ -2.07
SCN2AQ99250 AC010631.1-201ENST00000474150 156 ntBASIC2.11□□□□□ -2.07
SCN2AQ99250 AL160314.1-201ENST00000490836 438 ntBASIC2.11□□□□□ -2.07
SCN2AQ99250 AIG1P1-201ENST00000503376 148 ntBASIC2.11□□□□□ -2.07
SCN2AQ99250 AC026780.2-201ENST00000503489 730 ntTSL 5 BASIC2.11□□□□□ -2.07
SCN2AQ99250 AC005178.1-201ENST00000508392 440 ntBASIC2.11□□□□□ -2.07
SCN2AQ99250 TBCAP3-201ENST00000512475 312 ntBASIC2.11□□□□□ -2.07
SCN2AQ99250 LINC01491-201ENST00000558434 505 ntTSL 3 BASIC2.11□□□□□ -2.07
SCN2AQ99250 AC069114.1-201ENST00000580927 287 ntTSL 2 BASIC2.11□□□□□ -2.07
SCN2AQ99250 MIR3118-1-201ENST00000581787 76 ntBASIC2.11□□□□□ -2.07
Retrieved 100 of 98,524 protein–RNA pairs in 130.3 ms