Protein–RNA interactions for Protein: Q8NDQ6

ZNF540, Zinc finger protein 540, humanhuman

Predictions only

Length 660 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540Q8NDQ6 AC090970.3-201ENST00000612566 866 ntBASIC2.42□□□□□ -2.02
ZNF540Q8NDQ6 AL136981.2-201ENST00000617319 734 ntBASIC2.42□□□□□ -2.02
ZNF540Q8NDQ6 MIR5739-201ENST00000619803 80 ntBASIC2.42□□□□□ -2.02
ZNF540Q8NDQ6 AC012150.2-201ENST00000621300 544 ntBASIC2.42□□□□□ -2.02
ZNF540Q8NDQ6 AC091965.5-201ENST00000624785 342 ntBASIC2.42□□□□□ -2.02
ZNF540Q8NDQ6 CCDC82-202ENST00000423339 1878 ntAPPRIS P2 TSL 1 (best) BASIC2.41□□□□□ -2.02
ZNF540Q8NDQ6 CENPE-201ENST00000265148 8612 ntAPPRIS P1 TSL 2 BASIC2.41□□□□□ -2.02
ZNF540Q8NDQ6 XPO4-202ENST00000400602 9884 ntAPPRIS ALT1 TSL 5 BASIC2.41□□□□□ -2.02
ZNF540Q8NDQ6 RNU6-433P-201ENST00000363216 104 ntBASIC2.41□□□□□ -2.02
ZNF540Q8NDQ6 RNU1-100P-201ENST00000365255 165 ntBASIC2.41□□□□□ -2.02
ZNF540Q8NDQ6 MIR9-1-201ENST00000385198 89 ntBASIC2.41□□□□□ -2.02
ZNF540Q8NDQ6 RPS12P2-201ENST00000439728 269 ntBASIC2.41□□□□□ -2.02
ZNF540Q8NDQ6 AC018693.1-201ENST00000442829 550 ntTSL 4 BASIC2.41□□□□□ -2.02
ZNF540Q8NDQ6 OR6C5P-201ENST00000452388 923 ntBASIC2.41□□□□□ -2.02
ZNF540Q8NDQ6 RPS27AP8-201ENST00000452665 445 ntBASIC2.41□□□□□ -2.02
ZNF540Q8NDQ6 CACYBPP2-201ENST00000453625 678 ntBASIC2.41□□□□□ -2.02
ZNF540Q8NDQ6 LINC02077-201ENST00000465795 409 ntTSL 3 BASIC2.41□□□□□ -2.02
ZNF540Q8NDQ6 AC082650.1-201ENST00000503542 575 ntTSL 4 BASIC2.41□□□□□ -2.02
ZNF540Q8NDQ6 AC117522.2-201ENST00000510049 657 ntBASIC2.41□□□□□ -2.02
ZNF540Q8NDQ6 AC114316.1-201ENST00000511323 278 ntTSL 5 BASIC2.41□□□□□ -2.02
ZNF540Q8NDQ6 AC110751.1-201ENST00000511916 462 ntTSL 3 BASIC2.41□□□□□ -2.02
ZNF540Q8NDQ6 AC010261.1-201ENST00000514411 457 ntTSL 5 BASIC2.41□□□□□ -2.02
ZNF540Q8NDQ6 AC087664.2-201ENST00000522898 551 ntTSL 4 BASIC2.41□□□□□ -2.02
ZNF540Q8NDQ6 AL356057.1-201ENST00000533798 831 ntBASIC2.41□□□□□ -2.02
ZNF540Q8NDQ6 OR5V1-216ENST00000543825 1048 ntAPPRIS P1 BASIC2.41□□□□□ -2.02
ZNF540Q8NDQ6 AC136618.2-201ENST00000575091 400 ntBASIC2.41□□□□□ -2.02
ZNF540Q8NDQ6 MIR4782-201ENST00000577987 79 ntBASIC2.41□□□□□ -2.02
ZNF540Q8NDQ6 CLPTM1LP1-201ENST00000604519 484 ntBASIC2.41□□□□□ -2.02
ZNF540Q8NDQ6 AC007938.3-201ENST00000604965 623 ntBASIC2.41□□□□□ -2.02
ZNF540Q8NDQ6 AC004223.4-201ENST00000612426 332 ntBASIC2.41□□□□□ -2.02
ZNF540Q8NDQ6 AC104237.2-201ENST00000612456 443 ntBASIC2.41□□□□□ -2.02
ZNF540Q8NDQ6 ST7-OT4_4.1-201ENST00000614993 213 ntBASIC2.41□□□□□ -2.02
ZNF540Q8NDQ6 AC105265.4-201ENST00000618391 306 ntTSL 5 BASIC2.41□□□□□ -2.02
ZNF540Q8NDQ6 AL607023.1-201ENST00000620045 248 ntBASIC2.41□□□□□ -2.02
ZNF540Q8NDQ6 FRG1KP-201ENST00000623592 341 ntBASIC2.41□□□□□ -2.02
ZNF540Q8NDQ6 ZMYM1-201ENST00000359858 4175 ntAPPRIS P1 TSL 1 (best) BASIC2.41□□□□□ -2.02
ZNF540Q8NDQ6 CCDC30-201ENST00000340612 2664 ntAPPRIS P2 TSL 5 BASIC2.41□□□□□ -2.02
ZNF540Q8NDQ6 TLR6-205ENST00000610323 1443 ntTSL 5 BASIC2.41□□□□□ -2.02
ZNF540Q8NDQ6 AGTPBP1-205ENST00000376083 4208 ntAPPRIS P1 TSL 1 (best) BASIC2.41□□□□□ -2.02
ZNF540Q8NDQ6 N4BP2L2-205ENST00000446957 2071 ntTSL 5 BASIC2.4□□□□□ -2.02
ZNF540Q8NDQ6 OR2L2-203ENST00000642011 4225 ntAPPRIS P1 BASIC2.4□□□□□ -2.02
ZNF540Q8NDQ6 AKAP9-203ENST00000359028 12247 ntAPPRIS ALT2 TSL 5 BASIC2.4□□□□□ -2.03
ZNF540Q8NDQ6 RNU6-553P-201ENST00000364047 96 ntBASIC2.4□□□□□ -2.03
ZNF540Q8NDQ6 AL390198.1-201ENST00000376445 320 ntTSL 2 BASIC2.4□□□□□ -2.03
ZNF540Q8NDQ6 MIR196B-201ENST00000384852 84 ntBASIC2.4□□□□□ -2.03
ZNF540Q8NDQ6 AC002456.1-203ENST00000412669 449 ntTSL 3 BASIC2.4□□□□□ -2.03
ZNF540Q8NDQ6 AL365203.2-201ENST00000423444 196 ntBASIC2.4□□□□□ -2.03
ZNF540Q8NDQ6 AL022400.1-201ENST00000423946 935 ntBASIC2.4□□□□□ -2.03
ZNF540Q8NDQ6 AL391336.1-201ENST00000424678 484 ntTSL 3 BASIC2.4□□□□□ -2.03
ZNF540Q8NDQ6 AC093019.2-201ENST00000432294 384 ntTSL 3 BASIC2.4□□□□□ -2.03
ZNF540Q8NDQ6 PCYT1B-AS1-201ENST00000432626 275 ntTSL 2 BASIC2.4□□□□□ -2.03
ZNF540Q8NDQ6 AC112220.1-201ENST00000434628 355 ntBASIC2.4□□□□□ -2.03
ZNF540Q8NDQ6 AC091133.1-201ENST00000435491 483 ntTSL 3 BASIC2.4□□□□□ -2.03
ZNF540Q8NDQ6 AL136234.1-201ENST00000437080 349 ntTSL 2 BASIC2.4□□□□□ -2.03
ZNF540Q8NDQ6 AL359915.2-203ENST00000457043 540 ntTSL 3 BASIC2.4□□□□□ -2.03
ZNF540Q8NDQ6 BET1P1-201ENST00000482276 359 ntBASIC2.4□□□□□ -2.03
ZNF540Q8NDQ6 RN7SL432P-201ENST00000484057 298 ntBASIC2.4□□□□□ -2.03
ZNF540Q8NDQ6 RPL36AP48-201ENST00000485521 314 ntBASIC2.4□□□□□ -2.03
ZNF540Q8NDQ6 AC020703.1-201ENST00000505051 521 ntTSL 3 BASIC2.4□□□□□ -2.03
ZNF540Q8NDQ6 Y_RNA.688-201ENST00000516565 95 ntBASIC2.4□□□□□ -2.03
ZNF540Q8NDQ6 RNU6-1183P-201ENST00000517054 60 ntBASIC2.4□□□□□ -2.03
ZNF540Q8NDQ6 RNA5SP402-201ENST00000517148 110 ntBASIC2.4□□□□□ -2.03
ZNF540Q8NDQ6 LINC01493-203ENST00000534756 509 ntTSL 3 BASIC2.4□□□□□ -2.03
ZNF540Q8NDQ6 AP000462.2-203ENST00000540545 715 ntTSL 5 BASIC2.4□□□□□ -2.03
ZNF540Q8NDQ6 ELOCP32-201ENST00000548625 324 ntBASIC2.4□□□□□ -2.03
ZNF540Q8NDQ6 MRPL42-208ENST00000552217 920 ntAPPRIS P2 TSL 2 BASIC2.4□□□□□ -2.03
ZNF540Q8NDQ6 AC012378.1-201ENST00000561155 364 ntTSL 3 BASIC2.4□□□□□ -2.03
ZNF540Q8NDQ6 ISCA1P3-201ENST00000577104 373 ntBASIC2.4□□□□□ -2.03
ZNF540Q8NDQ6 MIR4672-201ENST00000583126 81 ntBASIC2.4□□□□□ -2.03
ZNF540Q8NDQ6 MIR5092-201ENST00000583139 88 ntBASIC2.4□□□□□ -2.03
ZNF540Q8NDQ6 BNIP3P9-201ENST00000603714 553 ntBASIC2.4□□□□□ -2.03
ZNF540Q8NDQ6 AL670379.6-201ENST00000603753 252 ntBASIC2.4□□□□□ -2.03
ZNF540Q8NDQ6 AL670379.11-201ENST00000604059 253 ntBASIC2.4□□□□□ -2.03
ZNF540Q8NDQ6 AC008162.1-201ENST00000604718 254 ntBASIC2.4□□□□□ -2.03
ZNF540Q8NDQ6 AL670379.1-201ENST00000604752 252 ntBASIC2.4□□□□□ -2.03
ZNF540Q8NDQ6 AL138963.2-201ENST00000605137 226 ntBASIC2.4□□□□□ -2.03
ZNF540Q8NDQ6 AL670379.5-201ENST00000605253 252 ntBASIC2.4□□□□□ -2.03
ZNF540Q8NDQ6 AL670379.12-201ENST00000605291 253 ntBASIC2.4□□□□□ -2.03
ZNF540Q8NDQ6 AL670379.8-201ENST00000605353 252 ntBASIC2.4□□□□□ -2.03
ZNF540Q8NDQ6 AL670379.7-201ENST00000605823 252 ntBASIC2.4□□□□□ -2.03
ZNF540Q8NDQ6 AC097468.3-201ENST00000607956 456 ntBASIC2.4□□□□□ -2.03
ZNF540Q8NDQ6 MIR3974-201ENST00000637126 96 ntBASIC2.4□□□□□ -2.03
ZNF540Q8NDQ6 EFCAB3-202ENST00000450662 1694 ntTSL 5 BASIC2.4□□□□□ -2.03
ZNF540Q8NDQ6 AL136360.1-201ENST00000503377 1900 ntBASIC2.4□□□□□ -2.03
ZNF540Q8NDQ6 EBAG9-210ENST00000620557 2186 ntAPPRIS P1 TSL 3 BASIC2.4□□□□□ -2.03
ZNF540Q8NDQ6 OR13G1-202ENST00000642119 2568 ntAPPRIS P1 BASIC2.4□□□□□ -2.03
ZNF540Q8NDQ6 Z75746.1-201ENST00000440243 2080 ntBASIC2.4□□□□□ -2.03
ZNF540Q8NDQ6 ESF1-202ENST00000617257 1470 ntTSL 5 BASIC2.39□□□□□ -2.03
ZNF540Q8NDQ6 ARHGAP11A-207ENST00000565905 3318 ntTSL 2 BASIC2.39□□□□□ -2.03
ZNF540Q8NDQ6 CYLC2-201ENST00000374798 2171 ntAPPRIS P1 TSL 1 (best) BASIC2.39□□□□□ -2.03
ZNF540Q8NDQ6 CDC27P3-201ENST00000635418 1910 ntBASIC2.39□□□□□ -2.03
ZNF540Q8NDQ6 RNU6-500P-201ENST00000362349 107 ntBASIC2.39□□□□□ -2.03
ZNF540Q8NDQ6 RPS27L-202ENST00000411926 528 ntTSL 3 BASIC2.39□□□□□ -2.03
ZNF540Q8NDQ6 AC097463.2-201ENST00000421074 142 ntBASIC2.39□□□□□ -2.03
ZNF540Q8NDQ6 AL445123.1-201ENST00000422023 446 ntTSL 2 BASIC2.39□□□□□ -2.03
ZNF540Q8NDQ6 NUP35P1-201ENST00000422734 947 ntBASIC2.39□□□□□ -2.03
ZNF540Q8NDQ6 VN1R108P-201ENST00000431580 830 ntBASIC2.39□□□□□ -2.03
ZNF540Q8NDQ6 RPL7P12-201ENST00000446719 750 ntBASIC2.39□□□□□ -2.03
ZNF540Q8NDQ6 FGF14-AS1-202ENST00000451630 321 ntTSL 2 BASIC2.39□□□□□ -2.03
ZNF540Q8NDQ6 MIR4435-2HG-213ENST00000451884 423 ntTSL 3 BASIC2.39□□□□□ -2.03
Retrieved 100 of 98,524 protein–RNA pairs in 110.6 ms