Protein–RNA interactions for Protein: Q8N6Y0

USHBP1, Usher syndrome type-1C protein-binding protein 1, humanhuman

Predictions only

Length 703 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1Q8N6Y0 AC092718.6-202ENST00000563072 408 ntTSL 2 BASIC4.68□□□□□ -1.66
USHBP1Q8N6Y0 AC090398.1-202ENST00000580403 457 ntTSL 2 BASIC4.68□□□□□ -1.66
USHBP1Q8N6Y0 YPEL5P2-201ENST00000605553 359 ntBASIC4.68□□□□□ -1.66
USHBP1Q8N6Y0 COPS2-203ENST00000542928 1580 ntTSL 2 BASIC4.68□□□□□ -1.66
USHBP1Q8N6Y0 CKAP5-201ENST00000312055 6532 ntTSL 5 BASIC4.68□□□□□ -1.66
USHBP1Q8N6Y0 AL049555.1-201ENST00000562834 1933 ntBASIC4.68□□□□□ -1.66
USHBP1Q8N6Y0 ADGRL2-207ENST00000370723 5254 ntTSL 5 BASIC4.67□□□□□ -1.66
USHBP1Q8N6Y0 ADGRL2-208ENST00000370725 5293 ntAPPRIS ALT2 TSL 5 BASIC4.67□□□□□ -1.66
USHBP1Q8N6Y0 ANGPTL1-202ENST00000367629 2289 ntAPPRIS P1 TSL 1 (best) BASIC4.67□□□□□ -1.66
USHBP1Q8N6Y0 OTUD6B-AS1-201ENST00000522817 4275 ntTSL 2 BASIC4.67□□□□□ -1.66
USHBP1Q8N6Y0 G2E3-201ENST00000206595 5804 ntAPPRIS P1 TSL 1 (best) BASIC4.67□□□□□ -1.66
USHBP1Q8N6Y0 RNU6-989P-201ENST00000362756 107 ntBASIC4.67□□□□□ -1.66
USHBP1Q8N6Y0 Y_RNA.80-201ENST00000362996 102 ntBASIC4.67□□□□□ -1.66
USHBP1Q8N6Y0 Y_RNA.404-201ENST00000383978 102 ntBASIC4.67□□□□□ -1.66
USHBP1Q8N6Y0 Y_RNA.476-201ENST00000384347 108 ntBASIC4.67□□□□□ -1.66
USHBP1Q8N6Y0 MT-TR-201ENST00000387439 65 ntBASIC4.67□□□□□ -1.66
USHBP1Q8N6Y0 DEFB116-201ENST00000400549 309 ntAPPRIS P1 TSL 1 (best) BASIC4.67□□□□□ -1.66
USHBP1Q8N6Y0 Y_RNA.594-201ENST00000410373 140 ntBASIC4.67□□□□□ -1.66
USHBP1Q8N6Y0 TRAPPC2P9-201ENST00000434556 343 ntBASIC4.67□□□□□ -1.66
USHBP1Q8N6Y0 RPL5P30-201ENST00000465511 891 ntBASIC4.67□□□□□ -1.66
USHBP1Q8N6Y0 MIR1302-2HG-201ENST00000469289 535 ntTSL 5 BASIC4.67□□□□□ -1.66
USHBP1Q8N6Y0 IL7R-208ENST00000511982 612 ntTSL 2 BASIC4.67□□□□□ -1.66
USHBP1Q8N6Y0 AC079160.1-201ENST00000513489 739 ntTSL 1 (best) BASIC4.67□□□□□ -1.66
USHBP1Q8N6Y0 CYCSP27-201ENST00000527643 293 ntBASIC4.67□□□□□ -1.66
USHBP1Q8N6Y0 AC074052.2-201ENST00000562516 214 ntTSL 3 BASIC4.67□□□□□ -1.66
USHBP1Q8N6Y0 AL034351.1-201ENST00000605288 668 ntBASIC4.67□□□□□ -1.66
USHBP1Q8N6Y0 MIR4458HG-202ENST00000605918 1057 ntTSL 1 (best) BASIC4.67□□□□□ -1.66
USHBP1Q8N6Y0 DLEU2_5.1-201ENST00000615567 84 ntBASIC4.67□□□□□ -1.66
USHBP1Q8N6Y0 MIR6130-201ENST00000619419 109 ntBASIC4.67□□□□□ -1.66
USHBP1Q8N6Y0 MIR8057-201ENST00000620957 69 ntBASIC4.67□□□□□ -1.66
USHBP1Q8N6Y0 RMDN2-AS1-204ENST00000626669 448 ntTSL 5 BASIC4.67□□□□□ -1.66
USHBP1Q8N6Y0 CAPZA2-215ENST00000639546 129 ntTSL 5 BASIC4.67□□□□□ -1.66
USHBP1Q8N6Y0 AL732372.2-225ENST00000642124 456 ntBASIC4.67□□□□□ -1.66
USHBP1Q8N6Y0 AC018529.3-201ENST00000624212 2254 ntBASIC4.67□□□□□ -1.66
USHBP1Q8N6Y0 CCDC82-202ENST00000423339 1878 ntAPPRIS P2 TSL 1 (best) BASIC4.66□□□□□ -1.66
USHBP1Q8N6Y0 F2RL2-201ENST00000296641 3429 ntAPPRIS P1 TSL 1 (best) BASIC4.66□□□□□ -1.66
USHBP1Q8N6Y0 SLC15A5-201ENST00000344941 2923 ntAPPRIS P1 TSL 5 BASIC4.66□□□□□ -1.66
USHBP1Q8N6Y0 AL139811.1-201ENST00000424779 2299 ntBASIC4.66□□□□□ -1.66
USHBP1Q8N6Y0 STON1-GTF2A1L-203ENST00000402114 3790 ntTSL 2 BASIC4.66□□□□□ -1.66
USHBP1Q8N6Y0 RNU6-715P-201ENST00000365204 103 ntBASIC4.66□□□□□ -1.66
USHBP1Q8N6Y0 EIF4EBP2P3-201ENST00000403144 334 ntBASIC4.66□□□□□ -1.66
USHBP1Q8N6Y0 MIR1250-201ENST00000408098 113 ntBASIC4.66□□□□□ -1.66
USHBP1Q8N6Y0 AC092447.6-201ENST00000414578 210 ntBASIC4.66□□□□□ -1.66
USHBP1Q8N6Y0 EIF4EP1-201ENST00000422311 642 ntBASIC4.66□□□□□ -1.66
USHBP1Q8N6Y0 AC007566.1-201ENST00000427458 643 ntTSL 5 BASIC4.66□□□□□ -1.66
USHBP1Q8N6Y0 LAMTOR3P1-201ENST00000428620 370 ntBASIC4.66□□□□□ -1.66
USHBP1Q8N6Y0 PSMA2P3-201ENST00000429685 675 ntBASIC4.66□□□□□ -1.66
USHBP1Q8N6Y0 AC236972.1-201ENST00000433225 199 ntBASIC4.66□□□□□ -1.66
USHBP1Q8N6Y0 SNORA59A-201ENST00000459326 152 ntBASIC4.66□□□□□ -1.66
USHBP1Q8N6Y0 AC092919.1-201ENST00000467896 229 ntTSL 2 BASIC4.66□□□□□ -1.66
USHBP1Q8N6Y0 APOA2-210ENST00000491350 263 ntTSL 1 (best) BASIC4.66□□□□□ -1.66
USHBP1Q8N6Y0 HMGB1P30-201ENST00000492455 606 ntBASIC4.66□□□□□ -1.66
USHBP1Q8N6Y0 AC091976.1-202ENST00000509211 630 ntTSL 3 BASIC4.66□□□□□ -1.66
USHBP1Q8N6Y0 AC114316.1-201ENST00000511323 278 ntTSL 5 BASIC4.66□□□□□ -1.66
USHBP1Q8N6Y0 Y_RNA.689-201ENST00000516589 107 ntBASIC4.66□□□□□ -1.66
USHBP1Q8N6Y0 RNU6-1271P-201ENST00000517049 105 ntBASIC4.66□□□□□ -1.66
USHBP1Q8N6Y0 RNU6-699P-201ENST00000517081 110 ntBASIC4.66□□□□□ -1.66
USHBP1Q8N6Y0 RNU6-323P-201ENST00000521915 107 ntBASIC4.66□□□□□ -1.66
USHBP1Q8N6Y0 LINC02425-201ENST00000536217 376 ntTSL 3 BASIC4.66□□□□□ -1.66
USHBP1Q8N6Y0 LINC01965-204ENST00000545549 575 ntTSL 4 BASIC4.66□□□□□ -1.66
USHBP1Q8N6Y0 AC012493.2-201ENST00000595083 291 ntBASIC4.66□□□□□ -1.66
USHBP1Q8N6Y0 PRR13P7-201ENST00000605538 430 ntBASIC4.66□□□□□ -1.66
USHBP1Q8N6Y0 MIR7851-201ENST00000610611 160 ntBASIC4.66□□□□□ -1.66
USHBP1Q8N6Y0 AL359547.2-201ENST00000615810 418 ntBASIC4.66□□□□□ -1.66
USHBP1Q8N6Y0 AC097478.4-201ENST00000615968 522 ntTSL 5 BASIC4.66□□□□□ -1.66
USHBP1Q8N6Y0 TJP1-204ENST00000400011 6764 ntAPPRIS ALT2 TSL 1 (best) BASIC4.66□□□□□ -1.66
USHBP1Q8N6Y0 RANBP6-201ENST00000259569 4576 ntAPPRIS P1 BASIC4.66□□□□□ -1.66
USHBP1Q8N6Y0 PABPC1P7-201ENST00000413177 1513 ntBASIC4.66□□□□□ -1.66
USHBP1Q8N6Y0 IL1RL1-204ENST00000409584 2693 ntTSL 5 BASIC4.66□□□□□ -1.66
USHBP1Q8N6Y0 LCOR-204ENST00000371103 10342 ntAPPRIS P3 TSL 1 (best) BASIC4.66□□□□□ -1.66
USHBP1Q8N6Y0 E2F5-208ENST00000521429 1551 ntTSL 5 BASIC4.65□□□□□ -1.66
USHBP1Q8N6Y0 GALNT11-203ENST00000422997 2371 ntTSL 5 BASIC4.65□□□□□ -1.66
USHBP1Q8N6Y0 CBLL1-201ENST00000222597 2003 ntAPPRIS ALT1 TSL 1 (best) BASIC4.65□□□□□ -1.66
USHBP1Q8N6Y0 STK31-205ENST00000433467 3085 ntTSL 2 BASIC4.65□□□□□ -1.66
USHBP1Q8N6Y0 RFX7-201ENST00000559447 10426 ntAPPRIS P5 TSL 5 BASIC4.65□□□□□ -1.66
USHBP1Q8N6Y0 WRN-201ENST00000298139 5215 ntAPPRIS P1 TSL 1 (best) BASIC4.65□□□□□ -1.66
USHBP1Q8N6Y0 Y_RNA.455-201ENST00000384230 98 ntBASIC4.65□□□□□ -1.67
USHBP1Q8N6Y0 RNU6-1222P-201ENST00000384615 107 ntBASIC4.65□□□□□ -1.67
USHBP1Q8N6Y0 NDUFS5P1-201ENST00000405668 289 ntBASIC4.65□□□□□ -1.67
USHBP1Q8N6Y0 RNU6-847P-201ENST00000411115 108 ntBASIC4.65□□□□□ -1.67
USHBP1Q8N6Y0 AL590632.1-201ENST00000424289 371 ntBASIC4.65□□□□□ -1.67
USHBP1Q8N6Y0 AC008267.5-201ENST00000424928 265 ntBASIC4.65□□□□□ -1.67
USHBP1Q8N6Y0 AC093151.1-201ENST00000427711 313 ntBASIC4.65□□□□□ -1.67
USHBP1Q8N6Y0 AL591704.1-201ENST00000432574 275 ntBASIC4.65□□□□□ -1.67
USHBP1Q8N6Y0 AL353748.1-201ENST00000440753 474 ntBASIC4.65□□□□□ -1.67
USHBP1Q8N6Y0 U8.20-201ENST00000459445 131 ntBASIC4.65□□□□□ -1.67
USHBP1Q8N6Y0 AC026801.1-201ENST00000497178 464 ntBASIC4.65□□□□□ -1.67
USHBP1Q8N6Y0 AC121154.1-201ENST00000507299 430 ntTSL 3 BASIC4.65□□□□□ -1.67
USHBP1Q8N6Y0 AC104136.1-201ENST00000512969 394 ntBASIC4.65□□□□□ -1.67
USHBP1Q8N6Y0 AC021713.1-201ENST00000526554 510 ntTSL 1 (best) BASIC4.65□□□□□ -1.67
USHBP1Q8N6Y0 AC026371.1-201ENST00000551867 419 ntBASIC4.65□□□□□ -1.67
USHBP1Q8N6Y0 MYL12BP1-201ENST00000569826 507 ntBASIC4.65□□□□□ -1.67
USHBP1Q8N6Y0 MCF2-202ENST00000370573 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC4.64□□□□□ -1.67
USHBP1Q8N6Y0 FNDC3A-202ENST00000398316 5714 ntTSL 1 (best) BASIC4.64□□□□□ -1.67
USHBP1Q8N6Y0 AL499616.1-201ENST00000415437 2633 ntTSL 2 BASIC4.64□□□□□ -1.67
USHBP1Q8N6Y0 ASAH2-201ENST00000329428 2184 ntTSL 1 (best) BASIC4.64□□□□□ -1.67
USHBP1Q8N6Y0 GAB1-203ENST00000505913 2477 ntTSL 2 BASIC4.64□□□□□ -1.67
USHBP1Q8N6Y0 GTDC1-206ENST00000409214 2954 ntAPPRIS P1 TSL 1 (best) BASIC4.64□□□□□ -1.67
USHBP1Q8N6Y0 NUDT12-201ENST00000230792 3492 ntAPPRIS P1 TSL 1 (best) BASIC4.64□□□□□ -1.67
USHBP1Q8N6Y0 SET-203ENST00000372688 801 ntTSL 2 BASIC4.64□□□□□ -1.67
Retrieved 100 of 98,524 protein–RNA pairs in 104.7 ms