Protein–RNA interactions for Protein: Q8IWP9

CCDC28A, Coiled-coil domain-containing protein 28A, humanhuman

Predictions only

Length 274 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28AQ8IWP9 AP004607.1-201ENST00000524456 203 ntBASIC3.27□□□□□ -1.89
CCDC28AQ8IWP9 AP000827.1-201ENST00000527814 258 ntBASIC3.27□□□□□ -1.89
CCDC28AQ8IWP9 AC090592.1-203ENST00000533942 575 ntTSL 3 BASIC3.27□□□□□ -1.89
CCDC28AQ8IWP9 AC100830.2-201ENST00000581636 240 ntBASIC3.27□□□□□ -1.89
CCDC28AQ8IWP9 MIR4480-201ENST00000582492 71 ntBASIC3.27□□□□□ -1.89
CCDC28AQ8IWP9 FGF7P1-201ENST00000582820 288 ntBASIC3.27□□□□□ -1.89
CCDC28AQ8IWP9 AC024220.1-201ENST00000603675 484 ntBASIC3.27□□□□□ -1.89
CCDC28AQ8IWP9 AC079587.1-201ENST00000603846 277 ntBASIC3.27□□□□□ -1.89
CCDC28AQ8IWP9 AC123912.5-201ENST00000605470 343 ntBASIC3.27□□□□□ -1.89
CCDC28AQ8IWP9 RNU6-6P-201ENST00000606623 107 ntBASIC3.27□□□□□ -1.89
CCDC28AQ8IWP9 AL161616.1-201ENST00000611867 286 ntBASIC3.27□□□□□ -1.89
CCDC28AQ8IWP9 uc_338.15-201ENST00000615470 191 ntBASIC3.27□□□□□ -1.89
CCDC28AQ8IWP9 AC243585.1-201ENST00000617867 607 ntTSL 3 BASIC3.27□□□□□ -1.89
CCDC28AQ8IWP9 RMST_7.1-201ENST00000621935 268 ntBASIC3.27□□□□□ -1.89
CCDC28AQ8IWP9 RUVBL2-213ENST00000639391 120 ntTSL 5 BASIC3.27□□□□□ -1.89
CCDC28AQ8IWP9 LINC01239-202ENST00000436786 2347 ntTSL 2 BASIC3.27□□□□□ -1.89
CCDC28AQ8IWP9 AL365440.2-201ENST00000419738 2597 ntTSL 2 BASIC3.27□□□□□ -1.89
CCDC28AQ8IWP9 GABRG2-229ENST00000641017 3628 ntBASIC3.27□□□□□ -1.89
CCDC28AQ8IWP9 CDC27P3-201ENST00000635418 1910 ntBASIC3.27□□□□□ -1.89
CCDC28AQ8IWP9 AC058791.1-201ENST00000608412 3198 ntBASIC3.26□□□□□ -1.89
CCDC28AQ8IWP9 TTN-204ENST00000360870 18218 ntTSL 5 BASIC3.26□□□□□ -1.89
CCDC28AQ8IWP9 NUFIP2-201ENST00000225388 10850 ntAPPRIS P1 TSL 1 (best) BASIC3.26□□□□□ -1.89
CCDC28AQ8IWP9 PKN2-AS1-202ENST00000458097 3542 ntTSL 2 BASIC3.26□□□□□ -1.89
CCDC28AQ8IWP9 ADGRL2-211ENST00000370730 6173 ntTSL 5 BASIC3.26□□□□□ -1.89
CCDC28AQ8IWP9 NEB-204ENST00000409198 20637 ntAPPRIS P3 TSL 5 BASIC3.26□□□□□ -1.89
CCDC28AQ8IWP9 Y_RNA.184-201ENST00000363884 108 ntBASIC3.26□□□□□ -1.89
CCDC28AQ8IWP9 DPRX-201ENST00000376650 648 ntAPPRIS P1 TSL 3 BASIC3.26□□□□□ -1.89
CCDC28AQ8IWP9 RNA5SP87-201ENST00000384155 118 ntBASIC3.26□□□□□ -1.89
CCDC28AQ8IWP9 AL078595.1-201ENST00000404458 226 ntBASIC3.26□□□□□ -1.89
CCDC28AQ8IWP9 AC007314.1-201ENST00000414538 565 ntTSL 4 BASIC3.26□□□□□ -1.89
CCDC28AQ8IWP9 AL139396.1-201ENST00000421137 167 ntBASIC3.26□□□□□ -1.89
CCDC28AQ8IWP9 SNAP23P1-201ENST00000433229 246 ntBASIC3.26□□□□□ -1.89
CCDC28AQ8IWP9 AL157937.1-201ENST00000435092 443 ntTSL 3 BASIC3.26□□□□□ -1.89
CCDC28AQ8IWP9 HIGD1AP11-201ENST00000438361 280 ntBASIC3.26□□□□□ -1.89
CCDC28AQ8IWP9 LINC02264-201ENST00000442020 576 ntTSL 3 BASIC3.26□□□□□ -1.89
CCDC28AQ8IWP9 RPL32P28-201ENST00000443577 397 ntBASIC3.26□□□□□ -1.89
CCDC28AQ8IWP9 HIGD1AP2-201ENST00000446367 280 ntBASIC3.26□□□□□ -1.89
CCDC28AQ8IWP9 AC004936.1-201ENST00000451755 361 ntTSL 3 BASIC3.26□□□□□ -1.89
CCDC28AQ8IWP9 AC006026.2-201ENST00000457376 180 ntBASIC3.26□□□□□ -1.89
CCDC28AQ8IWP9 snoU109.2-201ENST00000459316 135 ntBASIC3.26□□□□□ -1.89
CCDC28AQ8IWP9 RN7SL826P-201ENST00000479724 288 ntBASIC3.26□□□□□ -1.89
CCDC28AQ8IWP9 RN7SL283P-201ENST00000489055 303 ntBASIC3.26□□□□□ -1.89
CCDC28AQ8IWP9 ARHGEF3-AS1-202ENST00000495939 336 ntTSL 3 BASIC3.26□□□□□ -1.89
CCDC28AQ8IWP9 AC008526.1-201ENST00000509149 338 ntBASIC3.26□□□□□ -1.89
CCDC28AQ8IWP9 AC025244.2-201ENST00000509215 422 ntTSL 3 BASIC3.26□□□□□ -1.89
CCDC28AQ8IWP9 ABCA17P-206ENST00000512848 467 ntTSL 2 BASIC3.26□□□□□ -1.89
CCDC28AQ8IWP9 OR7H2P-201ENST00000513483 306 ntBASIC3.26□□□□□ -1.89
CCDC28AQ8IWP9 RNA5SP385-201ENST00000515947 110 ntBASIC3.26□□□□□ -1.89
CCDC28AQ8IWP9 Y_RNA.691-201ENST00000516611 103 ntBASIC3.26□□□□□ -1.89
CCDC28AQ8IWP9 RNU6-1088P-201ENST00000516850 104 ntBASIC3.26□□□□□ -1.89
CCDC28AQ8IWP9 AC105029.1-201ENST00000520250 669 ntBASIC3.26□□□□□ -1.89
CCDC28AQ8IWP9 AC022634.1-201ENST00000520765 532 ntBASIC3.26□□□□□ -1.89
CCDC28AQ8IWP9 AP005597.4-201ENST00000526762 229 ntBASIC3.26□□□□□ -1.89
CCDC28AQ8IWP9 AC073530.1-201ENST00000535917 775 ntTSL 5 BASIC3.26□□□□□ -1.89
CCDC28AQ8IWP9 AP000786.1-201ENST00000541092 581 ntTSL 4 BASIC3.26□□□□□ -1.89
CCDC28AQ8IWP9 AC011611.1-201ENST00000552179 197 ntBASIC3.26□□□□□ -1.89
CCDC28AQ8IWP9 AC021739.1-201ENST00000559631 174 ntBASIC3.26□□□□□ -1.89
CCDC28AQ8IWP9 AP001496.1-201ENST00000579113 471 ntTSL 4 BASIC3.26□□□□□ -1.89
CCDC28AQ8IWP9 MIR4506-201ENST00000584693 77 ntBASIC3.26□□□□□ -1.89
CCDC28AQ8IWP9 ZFP30-209ENST00000589018 444 ntTSL 5 BASIC3.26□□□□□ -1.89
CCDC28AQ8IWP9 AC098617.1-215ENST00000594798 1152 ntTSL 5 BASIC3.26□□□□□ -1.89
CCDC28AQ8IWP9 FAM25E-202ENST00000608562 189 ntBASIC3.26□□□□□ -1.89
CCDC28AQ8IWP9 AC005696.2-201ENST00000610120 626 ntTSL 3 BASIC3.26□□□□□ -1.89
CCDC28AQ8IWP9 C2orf91-203ENST00000615044 393 ntAPPRIS ALT2 TSL 5 BASIC3.26□□□□□ -1.89
CCDC28AQ8IWP9 AL021997.2-201ENST00000615674 271 ntBASIC3.26□□□□□ -1.89
CCDC28AQ8IWP9 AC100827.5-201ENST00000615883 426 ntBASIC3.26□□□□□ -1.89
CCDC28AQ8IWP9 AC104985.2-201ENST00000620598 500 ntBASIC3.26□□□□□ -1.89
CCDC28AQ8IWP9 AC091953.3-201ENST00000623220 236 ntBASIC3.26□□□□□ -1.89
CCDC28AQ8IWP9 AL133216.2-202ENST00000634512 349 ntBASIC3.26□□□□□ -1.89
CCDC28AQ8IWP9 MIR3199-2-201ENST00000636243 86 ntBASIC3.26□□□□□ -1.89
CCDC28AQ8IWP9 MS4A1-212ENST00000534668 3475 ntAPPRIS P1 TSL 2 BASIC3.26□□□□□ -1.89
CCDC28AQ8IWP9 CUL3-203ENST00000409096 2701 ntTSL 1 (best) BASIC3.26□□□□□ -1.89
CCDC28AQ8IWP9 EXOC6-203ENST00000371552 3564 ntTSL 5 BASIC3.26□□□□□ -1.89
CCDC28AQ8IWP9 AL158163.1-201ENST00000603915 1649 ntBASIC3.26□□□□□ -1.89
CCDC28AQ8IWP9 ATP2C1-202ENST00000359644 3401 ntAPPRIS P3 TSL 1 (best) BASIC3.25□□□□□ -1.89
CCDC28AQ8IWP9 LRIF1-203ENST00000494675 1912 ntAPPRIS ALT2 TSL 2 BASIC3.25□□□□□ -1.89
CCDC28AQ8IWP9 MUC7-202ENST00000413702 2540 ntAPPRIS P2 TSL 4 BASIC3.25□□□□□ -1.89
CCDC28AQ8IWP9 CCDC102B-201ENST00000360242 2711 ntAPPRIS P1 TSL 1 (best) BASIC3.25□□□□□ -1.89
CCDC28AQ8IWP9 RNU6-562P-201ENST00000362731 107 ntBASIC3.25□□□□□ -1.89
CCDC28AQ8IWP9 RNU6-283P-201ENST00000364788 107 ntBASIC3.25□□□□□ -1.89
CCDC28AQ8IWP9 SNORD116-11-201ENST00000383882 92 ntBASIC3.25□□□□□ -1.89
CCDC28AQ8IWP9 RPS16P5-201ENST00000406501 404 ntBASIC3.25□□□□□ -1.89
CCDC28AQ8IWP9 AC010967.2-201ENST00000418451 333 ntTSL 2 BASIC3.25□□□□□ -1.89
CCDC28AQ8IWP9 AC245291.1-201ENST00000419501 328 ntBASIC3.25□□□□□ -1.89
CCDC28AQ8IWP9 AC092660.1-201ENST00000420648 371 ntTSL 2 BASIC3.25□□□□□ -1.89
CCDC28AQ8IWP9 TTTY8-202ENST00000426035 518 ntTSL 1 (best) BASIC3.25□□□□□ -1.89
CCDC28AQ8IWP9 AL135923.2-201ENST00000435444 501 ntTSL 2 BASIC3.25□□□□□ -1.89
CCDC28AQ8IWP9 RPS15AP5-201ENST00000436276 388 ntBASIC3.25□□□□□ -1.89
CCDC28AQ8IWP9 TTTY8B-202ENST00000455570 518 ntTSL 1 (best) BASIC3.25□□□□□ -1.89
CCDC28AQ8IWP9 RPS4XP2-201ENST00000458402 793 ntBASIC3.25□□□□□ -1.89
CCDC28AQ8IWP9 AC104472.2-201ENST00000469035 601 ntBASIC3.25□□□□□ -1.89
CCDC28AQ8IWP9 AC084198.1-201ENST00000477747 402 ntBASIC3.25□□□□□ -1.89
CCDC28AQ8IWP9 MTND3P22-201ENST00000510932 243 ntBASIC3.25□□□□□ -1.89
CCDC28AQ8IWP9 RNU6-566P-201ENST00000516790 107 ntBASIC3.25□□□□□ -1.89
CCDC28AQ8IWP9 RN7SKP209-201ENST00000516888 304 ntBASIC3.25□□□□□ -1.89
CCDC28AQ8IWP9 RNA5SP454-201ENST00000517231 127 ntBASIC3.25□□□□□ -1.89
CCDC28AQ8IWP9 AC090568.2-205ENST00000518631 576 ntTSL 4 BASIC3.25□□□□□ -1.89
CCDC28AQ8IWP9 AC087341.1-201ENST00000521490 491 ntTSL 2 BASIC3.25□□□□□ -1.89
CCDC28AQ8IWP9 AC026371.1-201ENST00000551867 419 ntBASIC3.25□□□□□ -1.89
CCDC28AQ8IWP9 AC104002.2-201ENST00000553919 318 ntTSL 5 BASIC3.25□□□□□ -1.89
Retrieved 100 of 98,524 protein–RNA pairs in 118.4 ms