Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 AL359273.1-202ENST00000505585 905 ntTSL 1 (best) BASIC1.5□□□□□ -2.17
CCDC88AQ3V6T2 AC112178.1-201ENST00000511165 676 ntTSL 3 BASIC1.5□□□□□ -2.17
CCDC88AQ3V6T2 AC009117.2-201ENST00000565374 504 ntTSL 3 BASIC1.5□□□□□ -2.17
CCDC88AQ3V6T2 AL355877.2-201ENST00000603670 358 ntBASIC1.5□□□□□ -2.17
CCDC88AQ3V6T2 AL158211.4-201ENST00000606988 584 ntBASIC1.5□□□□□ -2.17
CCDC88AQ3V6T2 AC025048.6-202ENST00000627667 438 ntBASIC1.5□□□□□ -2.17
CCDC88AQ3V6T2 AC132825.7-201ENST00000638744 335 ntBASIC1.5□□□□□ -2.17
CCDC88AQ3V6T2 SLC10A5P1-201ENST00000379063 1306 ntBASIC1.5□□□□□ -2.17
CCDC88AQ3V6T2 AL161722.3-201ENST00000605789 2983 ntBASIC1.5□□□□□ -2.17
CCDC88AQ3V6T2 TRIQK-201ENST00000378861 1596 ntAPPRIS P1 TSL 1 (best) BASIC1.5□□□□□ -2.17
CCDC88AQ3V6T2 RNU6-203P-201ENST00000384038 104 ntBASIC1.5□□□□□ -2.17
CCDC88AQ3V6T2 U3.20-201ENST00000390909 217 ntBASIC1.5□□□□□ -2.17
CCDC88AQ3V6T2 U6atac.2-201ENST00000408644 118 ntBASIC1.5□□□□□ -2.17
CCDC88AQ3V6T2 AC023141.4-201ENST00000412031 328 ntBASIC1.5□□□□□ -2.17
CCDC88AQ3V6T2 CYCSP33-201ENST00000414485 327 ntBASIC1.5□□□□□ -2.17
CCDC88AQ3V6T2 CLYBL-AS1-201ENST00000416009 621 ntTSL 3 BASIC1.5□□□□□ -2.17
CCDC88AQ3V6T2 BPY2DP-201ENST00000422208 265 ntBASIC1.5□□□□□ -2.17
CCDC88AQ3V6T2 LINC01052-201ENST00000437777 496 ntTSL 3 BASIC1.5□□□□□ -2.17
CCDC88AQ3V6T2 AC117503.1-201ENST00000472241 394 ntBASIC1.5□□□□□ -2.17
CCDC88AQ3V6T2 RNU6-885P-201ENST00000516607 104 ntBASIC1.5□□□□□ -2.17
CCDC88AQ3V6T2 RNU6-528P-201ENST00000516926 100 ntBASIC1.5□□□□□ -2.17
CCDC88AQ3V6T2 AC023824.3-201ENST00000569003 562 ntBASIC1.5□□□□□ -2.17
CCDC88AQ3V6T2 AC091043.1-201ENST00000579830 453 ntTSL 3 BASIC1.5□□□□□ -2.17
CCDC88AQ3V6T2 MIR4714-201ENST00000580728 77 ntBASIC1.5□□□□□ -2.17
CCDC88AQ3V6T2 AC073413.2-201ENST00000604332 360 ntBASIC1.5□□□□□ -2.17
CCDC88AQ3V6T2 BIRC6-AS2-201ENST00000623382 589 ntTSL 2 BASIC1.5□□□□□ -2.17
CCDC88AQ3V6T2 AC010889.1-201ENST00000566193 2666 ntBASIC1.49□□□□□ -2.17
CCDC88AQ3V6T2 RNU6-492P-201ENST00000363035 104 ntBASIC1.49□□□□□ -2.17
CCDC88AQ3V6T2 TPMTP3-201ENST00000411928 735 ntBASIC1.49□□□□□ -2.17
CCDC88AQ3V6T2 BX664727.1-201ENST00000416024 466 ntBASIC1.49□□□□□ -2.17
CCDC88AQ3V6T2 RPS24P7-201ENST00000416921 246 ntBASIC1.49□□□□□ -2.17
CCDC88AQ3V6T2 USP9YP26-201ENST00000421008 661 ntBASIC1.49□□□□□ -2.17
CCDC88AQ3V6T2 AL049637.1-201ENST00000424664 503 ntTSL 5 BASIC1.49□□□□□ -2.17
CCDC88AQ3V6T2 MTCYBP15-201ENST00000433123 1127 ntBASIC1.49□□□□□ -2.17
CCDC88AQ3V6T2 THAP5P1-201ENST00000439089 262 ntBASIC1.49□□□□□ -2.17
CCDC88AQ3V6T2 AC016691.1-201ENST00000441321 413 ntBASIC1.49□□□□□ -2.17
CCDC88AQ3V6T2 ANKRD26P4-201ENST00000455755 950 ntBASIC1.49□□□□□ -2.17
CCDC88AQ3V6T2 LINC01198-202ENST00000458282 558 ntTSL 5 BASIC1.49□□□□□ -2.17
CCDC88AQ3V6T2 AC026410.2-201ENST00000460281 156 ntBASIC1.49□□□□□ -2.17
CCDC88AQ3V6T2 LINC02053-202ENST00000488262 940 ntTSL 1 (best) BASIC1.49□□□□□ -2.17
CCDC88AQ3V6T2 AC010468.3-201ENST00000508225 458 ntBASIC1.49□□□□□ -2.17
CCDC88AQ3V6T2 RNA5SP436-201ENST00000516020 115 ntBASIC1.49□□□□□ -2.17
CCDC88AQ3V6T2 AC093025.1-201ENST00000547795 569 ntTSL 2 BASIC1.49□□□□□ -2.17
CCDC88AQ3V6T2 LINC02301-203ENST00000555798 789 ntTSL 3 BASIC1.49□□□□□ -2.17
CCDC88AQ3V6T2 AC098850.3-201ENST00000577569 771 ntTSL 3 BASIC1.49□□□□□ -2.17
CCDC88AQ3V6T2 MIR7515HG-213ENST00000585872 758 ntTSL 5 BASIC1.49□□□□□ -2.17
CCDC88AQ3V6T2 AP001429.1-201ENST00000602568 530 ntBASIC1.49□□□□□ -2.17
CCDC88AQ3V6T2 AC103710.4-201ENST00000609301 899 ntBASIC1.49□□□□□ -2.17
CCDC88AQ3V6T2 SENP7-204ENST00000394085 1483 ntTSL 1 (best) BASIC1.49□□□□□ -2.17
CCDC88AQ3V6T2 BRDT-206ENST00000402388 3125 ntAPPRIS P3 TSL 1 (best) BASIC1.48□□□□□ -2.17
CCDC88AQ3V6T2 RNU5A-1-201ENST00000362698 116 ntBASIC1.48□□□□□ -2.17
CCDC88AQ3V6T2 SNORA40.6-201ENST00000391153 128 ntBASIC1.48□□□□□ -2.17
CCDC88AQ3V6T2 RPL7P27-201ENST00000403775 720 ntBASIC1.48□□□□□ -2.17
CCDC88AQ3V6T2 AL512604.1-201ENST00000404812 257 ntBASIC1.48□□□□□ -2.17
CCDC88AQ3V6T2 NDUFB4P7-201ENST00000423198 363 ntBASIC1.48□□□□□ -2.17
CCDC88AQ3V6T2 LINC01802-201ENST00000438824 523 ntTSL 3 BASIC1.48□□□□□ -2.17
CCDC88AQ3V6T2 AC098831.1-201ENST00000440661 216 ntBASIC1.48□□□□□ -2.17
CCDC88AQ3V6T2 AC010460.2-201ENST00000509054 677 ntBASIC1.48□□□□□ -2.17
CCDC88AQ3V6T2 AC026904.2-201ENST00000521359 537 ntTSL 3 BASIC1.48□□□□□ -2.17
CCDC88AQ3V6T2 AC010186.2-204ENST00000537668 439 ntBASIC1.48□□□□□ -2.17
CCDC88AQ3V6T2 AL133372.3-201ENST00000553082 821 ntTSL 3 BASIC1.48□□□□□ -2.17
CCDC88AQ3V6T2 AC012435.1-202ENST00000568772 240 ntBASIC1.48□□□□□ -2.17
CCDC88AQ3V6T2 MIR3912-201ENST00000577566 105 ntBASIC1.48□□□□□ -2.17
CCDC88AQ3V6T2 AC100781.1-201ENST00000597142 383 ntTSL 3 BASIC1.48□□□□□ -2.17
CCDC88AQ3V6T2 VN1R107P-201ENST00000601784 209 ntBASIC1.48□□□□□ -2.17
CCDC88AQ3V6T2 AP005137.2-201ENST00000609238 400 ntBASIC1.48□□□□□ -2.17
CCDC88AQ3V6T2 DUXAP10-204ENST00000612052 616 ntBASIC1.48□□□□□ -2.17
CCDC88AQ3V6T2 C8orf59-208ENST00000612809 475 ntAPPRIS P1 TSL 1 (best) BASIC1.48□□□□□ -2.17
CCDC88AQ3V6T2 AC068057.2-201ENST00000624047 895 ntBASIC1.48□□□□□ -2.17
CCDC88AQ3V6T2 MGAT4C-209ENST00000611864 25116 ntAPPRIS P1 TSL 5 BASIC1.48□□□□□ -2.17
CCDC88AQ3V6T2 Y_RNA.295-201ENST00000364918 102 ntBASIC1.48□□□□□ -2.17
CCDC88AQ3V6T2 RNU6-549P-201ENST00000384433 107 ntBASIC1.48□□□□□ -2.17
CCDC88AQ3V6T2 RNY1P4-201ENST00000384595 115 ntBASIC1.48□□□□□ -2.17
CCDC88AQ3V6T2 MIR95-201ENST00000385072 81 ntBASIC1.48□□□□□ -2.17
CCDC88AQ3V6T2 AC096649.2-201ENST00000416186 393 ntBASIC1.48□□□□□ -2.17
CCDC88AQ3V6T2 AP000550.2-201ENST00000417463 774 ntTSL 5 BASIC1.48□□□□□ -2.17
CCDC88AQ3V6T2 AP000552.3-201ENST00000434730 775 ntTSL 5 BASIC1.48□□□□□ -2.17
CCDC88AQ3V6T2 OR5H14-201ENST00000437310 1080 ntAPPRIS P1 BASIC1.48□□□□□ -2.17
CCDC88AQ3V6T2 AL353689.1-201ENST00000438895 199 ntBASIC1.48□□□□□ -2.17
CCDC88AQ3V6T2 ATG12P2-201ENST00000456830 416 ntBASIC1.48□□□□□ -2.17
CCDC88AQ3V6T2 AC046136.1-201ENST00000459855 533 ntTSL 3 BASIC1.48□□□□□ -2.17
CCDC88AQ3V6T2 AC008379.1-201ENST00000463655 464 ntBASIC1.48□□□□□ -2.17
CCDC88AQ3V6T2 AC093893.1-201ENST00000505781 510 ntTSL 5 BASIC1.48□□□□□ -2.17
CCDC88AQ3V6T2 AF213884.2-201ENST00000510417 903 ntBASIC1.48□□□□□ -2.17
CCDC88AQ3V6T2 RNU6-113P-201ENST00000516653 101 ntBASIC1.48□□□□□ -2.17
CCDC88AQ3V6T2 AC010175.1-201ENST00000538219 224 ntTSL 5 BASIC1.48□□□□□ -2.17
CCDC88AQ3V6T2 AC098848.1-201ENST00000588466 567 ntTSL 4 BASIC1.48□□□□□ -2.17
CCDC88AQ3V6T2 AL139344.1-201ENST00000605228 195 ntBASIC1.48□□□□□ -2.17
CCDC88AQ3V6T2 AC079610.3-201ENST00000606960 147 ntTSL 3 BASIC1.48□□□□□ -2.17
CCDC88AQ3V6T2 AL121652.1-201ENST00000608851 448 ntBASIC1.48□□□□□ -2.17
CCDC88AQ3V6T2 AC073592.7-201ENST00000623659 507 ntBASIC1.48□□□□□ -2.17
CCDC88AQ3V6T2 LRRD1-203ENST00000430130 2661 ntAPPRIS P1 TSL 5 BASIC1.47□□□□□ -2.17
CCDC88AQ3V6T2 AL359854.1-201ENST00000614203 1594 ntBASIC1.47□□□□□ -2.17
CCDC88AQ3V6T2 Y_RNA.25-201ENST00000362528 102 ntBASIC1.47□□□□□ -2.17
CCDC88AQ3V6T2 RNU1-139P-201ENST00000391307 165 ntBASIC1.47□□□□□ -2.17
CCDC88AQ3V6T2 AL365184.1-201ENST00000413801 572 ntTSL 3 BASIC1.47□□□□□ -2.17
CCDC88AQ3V6T2 ZNF863P-201ENST00000426746 417 ntBASIC1.47□□□□□ -2.17
CCDC88AQ3V6T2 DEFB130D-201ENST00000426866 237 ntBASIC1.47□□□□□ -2.17
CCDC88AQ3V6T2 AL022396.1-201ENST00000427011 386 ntTSL 3 BASIC1.47□□□□□ -2.17
CCDC88AQ3V6T2 RPL7P34-201ENST00000433316 712 ntBASIC1.47□□□□□ -2.17
Retrieved 100 of 98,524 protein–RNA pairs in 103.3 ms