Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 RPS3AP9-201ENST00000417027 792 ntBASIC2.31□□□□□ -2.04
COL4A4P53420 AF228730.4-201ENST00000421457 183 ntBASIC2.31□□□□□ -2.04
COL4A4P53420 RPL7P54-201ENST00000438336 674 ntBASIC2.31□□□□□ -2.04
COL4A4P53420 LINC00395-202ENST00000451570 415 ntTSL 3 BASIC2.31□□□□□ -2.04
COL4A4P53420 RPL23AP62-201ENST00000463396 453 ntBASIC2.31□□□□□ -2.04
COL4A4P53420 ZBTB20-AS2-201ENST00000478301 372 ntTSL 2 BASIC2.31□□□□□ -2.04
COL4A4P53420 COMMD10-206ENST00000515539 869 ntTSL 3 BASIC2.31□□□□□ -2.04
COL4A4P53420 SCARNA16.3-201ENST00000516595 184 ntBASIC2.31□□□□□ -2.04
COL4A4P53420 AP003072.1-201ENST00000531740 145 ntBASIC2.31□□□□□ -2.04
COL4A4P53420 AC136618.2-201ENST00000575091 400 ntBASIC2.31□□□□□ -2.04
COL4A4P53420 YWHAQP7-201ENST00000603536 658 ntBASIC2.31□□□□□ -2.04
COL4A4P53420 AP000787.2-201ENST00000604432 568 ntBASIC2.31□□□□□ -2.04
COL4A4P53420 ZNF630-AS1-201ENST00000614448 397 ntTSL 3 BASIC2.31□□□□□ -2.04
COL4A4P53420 AP003122.6-201ENST00000623831 495 ntBASIC2.31□□□□□ -2.04
COL4A4P53420 LPP-221ENST00000618621 18277 ntTSL 1 (best) BASIC2.31□□□□□ -2.04
COL4A4P53420 LPP-222ENST00000640853 18277 ntAPPRIS P1 TSL 1 (best) BASIC2.31□□□□□ -2.04
COL4A4P53420 CEP85L-202ENST00000368488 7118 ntTSL 5 BASIC2.31□□□□□ -2.04
COL4A4P53420 FER-201ENST00000281092 12119 ntAPPRIS P1 TSL 1 (best) BASIC2.31□□□□□ -2.04
COL4A4P53420 FSIP2-202ENST00000424728 20788 ntAPPRIS P2 TSL 5 BASIC2.31□□□□□ -2.04
COL4A4P53420 RNU6-216P-201ENST00000363282 104 ntBASIC2.31□□□□□ -2.04
COL4A4P53420 Y_RNA.481-201ENST00000384373 102 ntBASIC2.31□□□□□ -2.04
COL4A4P53420 Y_RNA.573-201ENST00000384763 105 ntBASIC2.31□□□□□ -2.04
COL4A4P53420 RNU6-1009P-201ENST00000390996 107 ntBASIC2.31□□□□□ -2.04
COL4A4P53420 SNORA26.7-201ENST00000391288 122 ntBASIC2.31□□□□□ -2.04
COL4A4P53420 CD3D-202ENST00000392884 476 ntTSL 2 BASIC2.31□□□□□ -2.04
COL4A4P53420 MARCH7-203ENST00000409591 2147 ntTSL 2 BASIC2.31□□□□□ -2.04
COL4A4P53420 RPS3AP3-201ENST00000411933 242 ntBASIC2.31□□□□□ -2.04
COL4A4P53420 LINC01312-201ENST00000412745 775 ntTSL 3 BASIC2.31□□□□□ -2.04
COL4A4P53420 AL109924.3-201ENST00000413324 393 ntTSL 2 BASIC2.31□□□□□ -2.04
COL4A4P53420 AL157884.2-201ENST00000424177 551 ntTSL 3 BASIC2.31□□□□□ -2.04
COL4A4P53420 AC005517.2-201ENST00000424673 553 ntBASIC2.31□□□□□ -2.04
COL4A4P53420 TRIAP1P1-201ENST00000427062 225 ntBASIC2.31□□□□□ -2.04
COL4A4P53420 AP001117.1-201ENST00000428205 609 ntTSL 2 BASIC2.31□□□□□ -2.04
COL4A4P53420 ABCC13-201ENST00000429114 611 ntTSL 3 BASIC2.31□□□□□ -2.04
COL4A4P53420 AL589986.2-201ENST00000429352 397 ntTSL 2 BASIC2.31□□□□□ -2.04
COL4A4P53420 AL358972.1-201ENST00000434356 466 ntTSL 2 BASIC2.31□□□□□ -2.04
COL4A4P53420 AC007879.4-201ENST00000440545 361 ntTSL 3 BASIC2.31□□□□□ -2.04
COL4A4P53420 ARPC3P5-201ENST00000448802 534 ntBASIC2.31□□□□□ -2.04
COL4A4P53420 HSPE1P22-201ENST00000456856 327 ntBASIC2.31□□□□□ -2.04
COL4A4P53420 EPGN-204ENST00000502358 312 ntTSL 1 (best) BASIC2.31□□□□□ -2.04
COL4A4P53420 EPGN-206ENST00000503098 339 ntTSL 1 (best) BASIC2.31□□□□□ -2.04
COL4A4P53420 KLRA1P-201ENST00000503499 986 ntBASIC2.31□□□□□ -2.04
COL4A4P53420 AC082650.1-201ENST00000503542 575 ntTSL 4 BASIC2.31□□□□□ -2.04
COL4A4P53420 AC111193.1-201ENST00000504097 155 ntBASIC2.31□□□□□ -2.04
COL4A4P53420 EPGN-207ENST00000505212 285 ntTSL 1 (best) BASIC2.31□□□□□ -2.04
COL4A4P53420 AC097521.1-201ENST00000505488 567 ntTSL 3 BASIC2.31□□□□□ -2.04
COL4A4P53420 AC110799.1-201ENST00000509098 449 ntTSL 3 BASIC2.31□□□□□ -2.04
COL4A4P53420 NAF1-205ENST00000509434 385 ntTSL 3 BASIC2.31□□□□□ -2.04
COL4A4P53420 AC105914.1-201ENST00000511798 226 ntBASIC2.31□□□□□ -2.04
COL4A4P53420 EPGN-209ENST00000514968 312 ntTSL 1 (best) BASIC2.31□□□□□ -2.04
COL4A4P53420 ARL2BPP2-201ENST00000550907 489 ntBASIC2.31□□□□□ -2.04
COL4A4P53420 POLR2KP1-201ENST00000553226 168 ntBASIC2.31□□□□□ -2.04
COL4A4P53420 MIR4795-201ENST00000584182 89 ntBASIC2.31□□□□□ -2.04
COL4A4P53420 AL157938.2-201ENST00000587264 894 ntTSL 5 BASIC2.31□□□□□ -2.04
COL4A4P53420 AL670379.6-201ENST00000603753 252 ntBASIC2.31□□□□□ -2.04
COL4A4P53420 AL670379.11-201ENST00000604059 253 ntBASIC2.31□□□□□ -2.04
COL4A4P53420 AC013553.2-201ENST00000604244 589 ntBASIC2.31□□□□□ -2.04
COL4A4P53420 AL670379.10-201ENST00000604330 253 ntBASIC2.31□□□□□ -2.04
COL4A4P53420 AC008162.1-201ENST00000604718 254 ntBASIC2.31□□□□□ -2.04
COL4A4P53420 AL670379.1-201ENST00000604752 252 ntBASIC2.31□□□□□ -2.04
COL4A4P53420 AL670379.2-201ENST00000604983 252 ntBASIC2.31□□□□□ -2.04
COL4A4P53420 AL670379.5-201ENST00000605253 252 ntBASIC2.31□□□□□ -2.04
COL4A4P53420 AL670379.4-201ENST00000605279 254 ntBASIC2.31□□□□□ -2.04
COL4A4P53420 AL670379.12-201ENST00000605291 253 ntBASIC2.31□□□□□ -2.04
COL4A4P53420 AL670379.8-201ENST00000605353 252 ntBASIC2.31□□□□□ -2.04
COL4A4P53420 AL670379.9-201ENST00000605428 253 ntBASIC2.31□□□□□ -2.04
COL4A4P53420 AL670379.7-201ENST00000605823 252 ntBASIC2.31□□□□□ -2.04
COL4A4P53420 AC093788.1-201ENST00000609356 927 ntBASIC2.31□□□□□ -2.04
COL4A4P53420 MIR6779-201ENST00000617283 64 ntBASIC2.31□□□□□ -2.04
COL4A4P53420 AC068880.5-201ENST00000624331 290 ntBASIC2.31□□□□□ -2.04
COL4A4P53420 MKKS-204ENST00000639674 192 ntBASIC2.31□□□□□ -2.04
COL4A4P53420 EYS-211ENST00000503581 10589 ntAPPRIS P3 TSL 5 BASIC2.31□□□□□ -2.04
COL4A4P53420 ZNF260-203ENST00000588993 4174 ntAPPRIS P1 TSL 1 (best) BASIC2.31□□□□□ -2.04
COL4A4P53420 UEVLD-208ENST00000535484 1963 ntTSL 2 BASIC2.3□□□□□ -2.04
COL4A4P53420 RRAS2-202ENST00000414023 1884 ntTSL 2 BASIC2.3□□□□□ -2.04
COL4A4P53420 SCEL-205ENST00000535157 3096 ntAPPRIS ALT2 TSL 2 BASIC2.3□□□□□ -2.04
COL4A4P53420 DYNC2H1-202ENST00000375735 13678 ntAPPRIS ALT1 TSL 1 (best) BASIC2.3□□□□□ -2.04
COL4A4P53420 GDI2P1-201ENST00000429312 1336 ntBASIC2.3□□□□□ -2.04
COL4A4P53420 PMCH-201ENST00000329406 766 ntAPPRIS P1 TSL 1 (best) BASIC2.3□□□□□ -2.04
COL4A4P53420 Y_RNA.97-201ENST00000363094 102 ntBASIC2.3□□□□□ -2.04
COL4A4P53420 SNORA63-201ENST00000363450 132 ntBASIC2.3□□□□□ -2.04
COL4A4P53420 RNU6-619P-201ENST00000365146 108 ntBASIC2.3□□□□□ -2.04
COL4A4P53420 Y_RNA.548-201ENST00000384656 105 ntBASIC2.3□□□□□ -2.04
COL4A4P53420 SNORA48.3-201ENST00000391081 134 ntBASIC2.3□□□□□ -2.04
COL4A4P53420 AL354733.1-204ENST00000412069 424 ntTSL 5 BASIC2.3□□□□□ -2.04
COL4A4P53420 AC109780.2-201ENST00000413467 845 ntBASIC2.3□□□□□ -2.04
COL4A4P53420 AC002456.1-201ENST00000415965 317 ntTSL 5 BASIC2.3□□□□□ -2.04
COL4A4P53420 C1DP2-201ENST00000418167 426 ntBASIC2.3□□□□□ -2.04
COL4A4P53420 AL136322.1-201ENST00000422250 548 ntTSL 4 BASIC2.3□□□□□ -2.04
COL4A4P53420 RPS27AP14-201ENST00000422868 454 ntBASIC2.3□□□□□ -2.04
COL4A4P53420 ELOCP14-201ENST00000428070 331 ntBASIC2.3□□□□□ -2.04
COL4A4P53420 AC073464.1-201ENST00000429823 534 ntBASIC2.3□□□□□ -2.04
COL4A4P53420 AC009961.2-201ENST00000435771 251 ntBASIC2.3□□□□□ -2.04
COL4A4P53420 ELOCP7-201ENST00000439968 331 ntBASIC2.3□□□□□ -2.04
COL4A4P53420 AL022238.1-201ENST00000442557 355 ntBASIC2.3□□□□□ -2.04
COL4A4P53420 RPS26P30-201ENST00000443431 335 ntBASIC2.3□□□□□ -2.04
COL4A4P53420 MTND6P13-201ENST00000443510 523 ntBASIC2.3□□□□□ -2.04
COL4A4P53420 AL357514.1-201ENST00000446322 488 ntTSL 3 BASIC2.3□□□□□ -2.04
COL4A4P53420 AC004888.1-201ENST00000450480 547 ntTSL 2 BASIC2.3□□□□□ -2.04
COL4A4P53420 PMCHL2-203ENST00000457791 237 ntBASIC2.3□□□□□ -2.04
Retrieved 100 of 98,524 protein–RNA pairs in 129.2 ms