Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 AC002558.3-201ENST00000574021 401 ntTSL 3 BASIC4.54□□□□□ -1.68
LIG3P49916 MIR378J-201ENST00000611988 109 ntBASIC4.54□□□□□ -1.68
LIG3P49916 HMGB1P24-202ENST00000615653 685 ntBASIC4.54□□□□□ -1.68
LIG3P49916 MLH1-212ENST00000455445 2296 ntTSL 2 BASIC4.54□□□□□ -1.68
LIG3P49916 SLC30A6-205ENST00000435660 4776 ntTSL 1 (best) BASIC4.54□□□□□ -1.68
LIG3P49916 ETV1-205ENST00000405192 4402 ntTSL 1 (best) BASIC4.54□□□□□ -1.68
LIG3P49916 GABPB1-AS1-202ENST00000499624 16182 ntTSL 1 (best) BASIC4.53□□□□□ -1.68
LIG3P49916 LINC01828-203ENST00000452716 3250 ntTSL 5 BASIC4.53□□□□□ -1.68
LIG3P49916 AC007785.2-201ENST00000598627 1916 ntBASIC4.53□□□□□ -1.68
LIG3P49916 KLRD1-204ENST00000381908 15549 ntAPPRIS P4 TSL 1 (best) BASIC4.53□□□□□ -1.68
LIG3P49916 MUCL1-201ENST00000308796 470 ntAPPRIS P2 TSL 1 (best) BASIC4.53□□□□□ -1.68
LIG3P49916 RNA5SP388-201ENST00000362584 119 ntBASIC4.53□□□□□ -1.68
LIG3P49916 Y_RNA.210-201ENST00000364161 110 ntBASIC4.53□□□□□ -1.68
LIG3P49916 RNU6-166P-201ENST00000384371 107 ntBASIC4.53□□□□□ -1.68
LIG3P49916 Y_RNA.526-201ENST00000384572 110 ntBASIC4.53□□□□□ -1.68
LIG3P49916 RNU6-1222P-201ENST00000384615 107 ntBASIC4.53□□□□□ -1.68
LIG3P49916 AC118345.1-201ENST00000411785 366 ntTSL 3 BASIC4.53□□□□□ -1.68
LIG3P49916 AL139254.1-201ENST00000421114 376 ntTSL 3 BASIC4.53□□□□□ -1.68
LIG3P49916 U51244.1-201ENST00000423120 374 ntTSL 3 BASIC4.53□□□□□ -1.68
LIG3P49916 RPL18P10-201ENST00000425606 538 ntBASIC4.53□□□□□ -1.68
LIG3P49916 Z82210.1-201ENST00000440037 231 ntBASIC4.53□□□□□ -1.68
LIG3P49916 AL033380.1-201ENST00000442781 421 ntTSL 2 BASIC4.53□□□□□ -1.68
LIG3P49916 CHEK2P4-201ENST00000450340 246 ntBASIC4.53□□□□□ -1.68
LIG3P49916 GAS5-221ENST00000450589 632 ntTSL 1 (best) BASIC4.53□□□□□ -1.68
LIG3P49916 AC008154.1-201ENST00000453087 327 ntTSL 3 BASIC4.53□□□□□ -1.68
LIG3P49916 RPL23AP24-201ENST00000458203 385 ntBASIC4.53□□□□□ -1.68
LIG3P49916 AC139453.3-201ENST00000493276 369 ntBASIC4.53□□□□□ -1.68
LIG3P49916 AC104164.2-201ENST00000496953 495 ntBASIC4.53□□□□□ -1.68
LIG3P49916 AC093852.1-201ENST00000503587 266 ntBASIC4.53□□□□□ -1.68
LIG3P49916 AK3P2-201ENST00000507976 429 ntBASIC4.53□□□□□ -1.68
LIG3P49916 AL592156.1-201ENST00000508758 304 ntBASIC4.53□□□□□ -1.68
LIG3P49916 LINC01337-201ENST00000515871 440 ntTSL 3 BASIC4.53□□□□□ -1.68
LIG3P49916 RNU6-572P-201ENST00000516724 80 ntBASIC4.53□□□□□ -1.68
LIG3P49916 Y_RNA.715-201ENST00000517082 110 ntBASIC4.53□□□□□ -1.68
LIG3P49916 AP005902.1-201ENST00000521358 186 ntBASIC4.53□□□□□ -1.68
LIG3P49916 AC022039.1-201ENST00000527110 488 ntTSL 2 BASIC4.53□□□□□ -1.68
LIG3P49916 AP000827.1-201ENST00000527814 258 ntBASIC4.53□□□□□ -1.68
LIG3P49916 AC040926.1-201ENST00000530195 238 ntBASIC4.53□□□□□ -1.68
LIG3P49916 AC103996.1-201ENST00000555468 102 ntBASIC4.53□□□□□ -1.68
LIG3P49916 MAFTRR-204ENST00000568389 506 ntTSL 4 BASIC4.53□□□□□ -1.68
LIG3P49916 AC006600.1-201ENST00000572529 153 ntBASIC4.53□□□□□ -1.68
LIG3P49916 MIR4277-201ENST00000578298 84 ntBASIC4.53□□□□□ -1.68
LIG3P49916 MIR4284-201ENST00000578924 81 ntBASIC4.53□□□□□ -1.68
LIG3P49916 AC009271.1-202ENST00000588803 492 ntTSL 3 BASIC4.53□□□□□ -1.68
LIG3P49916 AL158827.2-201ENST00000602494 330 ntBASIC4.53□□□□□ -1.68
LIG3P49916 AC010201.1-201ENST00000605051 540 ntBASIC4.53□□□□□ -1.68
LIG3P49916 AL356218.2-201ENST00000605264 187 ntBASIC4.53□□□□□ -1.68
LIG3P49916 MIR8076-201ENST00000611401 83 ntBASIC4.53□□□□□ -1.68
LIG3P49916 AC091905.2-201ENST00000623143 306 ntBASIC4.53□□□□□ -1.68
LIG3P49916 AC138627.2-201ENST00000624202 601 ntBASIC4.53□□□□□ -1.68
LIG3P49916 AL691447.3-201ENST00000635020 330 ntBASIC4.53□□□□□ -1.68
LIG3P49916 POSTN-202ENST00000379743 3196 ntTSL 1 (best) BASIC4.53□□□□□ -1.68
LIG3P49916 UBE4A-201ENST00000252108 6103 ntAPPRIS ALT1 TSL 1 (best) BASIC4.53□□□□□ -1.68
LIG3P49916 CDK14-201ENST00000265741 4953 ntTSL 1 (best) BASIC4.53□□□□□ -1.68
LIG3P49916 N4BP2L2-201ENST00000267068 9427 ntAPPRIS P1 TSL 1 (best) BASIC4.53□□□□□ -1.68
LIG3P49916 KIF2A-205ENST00000506857 2219 ntTSL 2 BASIC4.53□□□□□ -1.68
LIG3P49916 CCNT2-201ENST00000264157 6917 ntAPPRIS P1 TSL 1 (best) BASIC4.53□□□□□ -1.68
LIG3P49916 PANK1-202ENST00000322191 2513 ntTSL 1 (best) BASIC4.52□□□□□ -1.69
LIG3P49916 GPAM-201ENST00000348367 6371 ntAPPRIS P1 TSL 1 (best) BASIC4.52□□□□□ -1.69
LIG3P49916 MECOM-219ENST00000628990 4835 ntAPPRIS P3 TSL 1 (best) BASIC4.52□□□□□ -1.69
LIG3P49916 NOL8P1-201ENST00000508336 3529 ntBASIC4.52□□□□□ -1.69
LIG3P49916 CNOT10-206ENST00000454516 2760 ntTSL 2 BASIC4.52□□□□□ -1.69
LIG3P49916 AL157396.1-201ENST00000630034 8444 ntTSL 1 (best) BASIC4.52□□□□□ -1.69
LIG3P49916 AC126755.2-208ENST00000327792 462 ntBASIC4.52□□□□□ -1.69
LIG3P49916 AC138969.1-213ENST00000331436 462 ntBASIC4.52□□□□□ -1.69
LIG3P49916 RN7SKP227-201ENST00000364445 330 ntBASIC4.52□□□□□ -1.69
LIG3P49916 LINC01492-202ENST00000425157 659 ntTSL 5 BASIC4.52□□□□□ -1.69
LIG3P49916 AL732292.1-201ENST00000426692 226 ntBASIC4.52□□□□□ -1.69
LIG3P49916 AC004869.2-201ENST00000436501 229 ntTSL 3 BASIC4.52□□□□□ -1.69
LIG3P49916 OSTCP8-201ENST00000445117 448 ntBASIC4.52□□□□□ -1.69
LIG3P49916 AC078817.1-201ENST00000492623 435 ntBASIC4.52□□□□□ -1.69
LIG3P49916 RPL22P13-201ENST00000493291 347 ntBASIC4.52□□□□□ -1.69
LIG3P49916 AC083829.1-201ENST00000503756 657 ntBASIC4.52□□□□□ -1.69
LIG3P49916 AC087664.2-201ENST00000522898 551 ntTSL 4 BASIC4.52□□□□□ -1.69
LIG3P49916 AC005255.1-201ENST00000593748 216 ntBASIC4.52□□□□□ -1.69
LIG3P49916 VN1R91P-201ENST00000594377 169 ntBASIC4.52□□□□□ -1.69
LIG3P49916 ZNF432-203ENST00000597273 624 ntTSL 2 BASIC4.52□□□□□ -1.69
LIG3P49916 AC004805.2-201ENST00000605382 482 ntBASIC4.52□□□□□ -1.69
LIG3P49916 U2.1-201ENST00000618978 145 ntBASIC4.52□□□□□ -1.69
LIG3P49916 AC099506.2-201ENST00000623074 221 ntBASIC4.52□□□□□ -1.69
LIG3P49916 TEX41-280ENST00000629185 591 ntTSL 5 BASIC4.52□□□□□ -1.69
LIG3P49916 WDR49-207ENST00000479765 2108 ntTSL 2 BASIC4.52□□□□□ -1.69
LIG3P49916 ZNF72P-201ENST00000425869 1908 ntBASIC4.52□□□□□ -1.69
LIG3P49916 AC007390.2-201ENST00000606229 3803 ntBASIC4.52□□□□□ -1.69
LIG3P49916 NFAT5-203ENST00000393742 13067 ntAPPRIS ALT1 TSL 1 (best) BASIC4.52□□□□□ -1.69
LIG3P49916 UBA6-201ENST00000322244 9564 ntAPPRIS P1 TSL 1 (best) BASIC4.52□□□□□ -1.69
LIG3P49916 CCDC14-217ENST00000485727 7917 ntAPPRIS ALT2 TSL 1 (best) BASIC4.51□□□□□ -1.69
LIG3P49916 CPHL1P-201ENST00000461341 3407 ntBASIC4.51□□□□□ -1.69
LIG3P49916 MTND5P9-201ENST00000503854 1755 ntBASIC4.51□□□□□ -1.69
LIG3P49916 ORC4-201ENST00000264169 6598 ntAPPRIS P1 TSL 5 BASIC4.51□□□□□ -1.69
LIG3P49916 SNORA63.7-201ENST00000365579 123 ntBASIC4.51□□□□□ -1.69
LIG3P49916 C1orf100-202ENST00000366537 483 ntTSL 1 (best) BASIC4.51□□□□□ -1.69
LIG3P49916 GTSF1L-201ENST00000373003 835 ntAPPRIS P3 BASIC4.51□□□□□ -1.69
LIG3P49916 GTSF1L-202ENST00000373005 459 ntAPPRIS ALT2 TSL 3 BASIC4.51□□□□□ -1.69
LIG3P49916 RNU6-713P-201ENST00000384761 107 ntBASIC4.51□□□□□ -1.69
LIG3P49916 RNU6-847P-201ENST00000411115 108 ntBASIC4.51□□□□□ -1.69
LIG3P49916 MAP1LC3BP1-201ENST00000417653 379 ntBASIC4.51□□□□□ -1.69
LIG3P49916 AC012370.1-201ENST00000419244 530 ntTSL 3 BASIC4.51□□□□□ -1.69
LIG3P49916 AC007098.1-201ENST00000420122 367 ntBASIC4.51□□□□□ -1.69
LIG3P49916 AL356387.2-201ENST00000422272 243 ntBASIC4.51□□□□□ -1.69
Retrieved 100 of 98,524 protein–RNA pairs in 108.3 ms