Protein–RNA interactions for Protein: P48380

RFX3, Transcription factor RFX3, humanhuman

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3P48380 AC068781.1-201ENST00000488231 618 ntBASIC2.1□□□□□ -2.07
RFX3P48380 AL359273.1-202ENST00000505585 905 ntTSL 1 (best) BASIC2.1□□□□□ -2.07
RFX3P48380 SNORD19.2-201ENST00000516978 73 ntBASIC2.1□□□□□ -2.07
RFX3P48380 AC068992.1-202ENST00000519280 270 ntTSL 3 BASIC2.1□□□□□ -2.07
RFX3P48380 AC007598.1-202ENST00000561528 435 ntTSL 3 BASIC2.1□□□□□ -2.07
RFX3P48380 AC002400.1-201ENST00000569310 726 ntBASIC2.1□□□□□ -2.07
RFX3P48380 AC009127.3-201ENST00000570531 403 ntBASIC2.1□□□□□ -2.07
RFX3P48380 ISCA1P3-201ENST00000577104 373 ntBASIC2.1□□□□□ -2.07
RFX3P48380 AP000811.1-201ENST00000603803 651 ntBASIC2.1□□□□□ -2.07
RFX3P48380 LINC02112-205ENST00000606744 236 ntTSL 1 (best) BASIC2.1□□□□□ -2.07
RFX3P48380 AC023490.1-201ENST00000614584 375 ntTSL 2 BASIC2.1□□□□□ -2.07
RFX3P48380 ST7-OT4_4.1-201ENST00000614993 213 ntBASIC2.1□□□□□ -2.07
RFX3P48380 AC244093.3-201ENST00000615419 411 ntTSL 3 BASIC2.1□□□□□ -2.07
RFX3P48380 AC009159.1-201ENST00000618386 642 ntBASIC2.1□□□□□ -2.07
RFX3P48380 MIR6766-201ENST00000622641 72 ntBASIC2.1□□□□□ -2.07
RFX3P48380 AC011718.1-201ENST00000622906 375 ntTSL 1 (best) BASIC2.1□□□□□ -2.07
RFX3P48380 AC012640.5-201ENST00000623897 319 ntBASIC2.1□□□□□ -2.07
RFX3P48380 Clostridiales-1.3-201ENST00000637703 147 ntBASIC2.1□□□□□ -2.07
RFX3P48380 AC131280.1-202ENST00000624067 4211 ntBASIC2.1□□□□□ -2.07
RFX3P48380 MTND4P16-201ENST00000466108 1367 ntBASIC2.1□□□□□ -2.07
RFX3P48380 AC016717.2-201ENST00000609089 5141 ntBASIC2.09□□□□□ -2.07
RFX3P48380 AC006020.1-201ENST00000420179 1854 ntBASIC2.09□□□□□ -2.07
RFX3P48380 MCF2-204ENST00000414978 3813 ntAPPRIS ALT2 TSL 5 BASIC2.09□□□□□ -2.07
RFX3P48380 GPR22-201ENST00000304402 2942 ntAPPRIS P1 TSL 1 (best) BASIC2.09□□□□□ -2.07
RFX3P48380 COMMD8-201ENST00000381571 1469 ntAPPRIS P1 TSL 1 (best) BASIC2.09□□□□□ -2.07
RFX3P48380 NACAP2-201ENST00000318548 624 ntBASIC2.09□□□□□ -2.07
RFX3P48380 SNORA70B-201ENST00000384210 135 ntBASIC2.09□□□□□ -2.07
RFX3P48380 MIR221-201ENST00000385135 110 ntBASIC2.09□□□□□ -2.07
RFX3P48380 RNU2-62P-201ENST00000410868 191 ntBASIC2.09□□□□□ -2.07
RFX3P48380 AC078974.1-201ENST00000411597 223 ntBASIC2.09□□□□□ -2.07
RFX3P48380 LINC00397-201ENST00000422074 344 ntTSL 3 BASIC2.09□□□□□ -2.07
RFX3P48380 AC104651.1-201ENST00000427559 735 ntBASIC2.09□□□□□ -2.07
RFX3P48380 WARS2P1-201ENST00000429678 537 ntBASIC2.09□□□□□ -2.07
RFX3P48380 AL731563.2-201ENST00000431293 291 ntTSL 5 BASIC2.09□□□□□ -2.07
RFX3P48380 LINC01626-201ENST00000431997 452 ntTSL 3 BASIC2.09□□□□□ -2.07
RFX3P48380 AC004383.1-201ENST00000438135 289 ntBASIC2.09□□□□□ -2.07
RFX3P48380 NFIA-AS1-201ENST00000442027 384 ntTSL 2 BASIC2.09□□□□□ -2.07
RFX3P48380 AC005703.2-201ENST00000453339 343 ntTSL 2 BASIC2.09□□□□□ -2.07
RFX3P48380 AC080013.2-201ENST00000460866 323 ntBASIC2.09□□□□□ -2.07
RFX3P48380 AC072039.1-201ENST00000477611 581 ntBASIC2.09□□□□□ -2.07
RFX3P48380 RPL23AP49-201ENST00000492925 468 ntBASIC2.09□□□□□ -2.07
RFX3P48380 HSPE1P23-201ENST00000509838 286 ntBASIC2.09□□□□□ -2.07
RFX3P48380 AC010261.1-201ENST00000514411 457 ntTSL 5 BASIC2.09□□□□□ -2.07
RFX3P48380 RNU6-201P-201ENST00000517100 61 ntBASIC2.09□□□□□ -2.07
RFX3P48380 AP003461.1-201ENST00000528866 78 ntBASIC2.09□□□□□ -2.07
RFX3P48380 AP000889.2-201ENST00000532684 490 ntBASIC2.09□□□□□ -2.07
RFX3P48380 CBX3P7-201ENST00000532876 502 ntBASIC2.09□□□□□ -2.07
RFX3P48380 AC121758.2-201ENST00000553271 193 ntBASIC2.09□□□□□ -2.07
RFX3P48380 AL121821.2-201ENST00000556081 394 ntBASIC2.09□□□□□ -2.07
RFX3P48380 LINC02311-201ENST00000556144 383 ntTSL 3 BASIC2.09□□□□□ -2.07
RFX3P48380 AC087286.1-201ENST00000560712 568 ntTSL 3 BASIC2.09□□□□□ -2.07
RFX3P48380 AC126407.1-201ENST00000563044 566 ntTSL 4 BASIC2.09□□□□□ -2.07
RFX3P48380 AL356432.3-201ENST00000568952 465 ntBASIC2.09□□□□□ -2.07
RFX3P48380 ROCK1P1-201ENST00000573767 549 ntBASIC2.09□□□□□ -2.07
RFX3P48380 RPS3AP23-202ENST00000574601 686 ntBASIC2.09□□□□□ -2.07
RFX3P48380 LRRC37A5P-203ENST00000580181 585 ntBASIC2.09□□□□□ -2.07
RFX3P48380 MIR4765-201ENST00000585007 77 ntBASIC2.09□□□□□ -2.07
RFX3P48380 AC012593.1-213ENST00000587255 510 ntTSL 5 BASIC2.09□□□□□ -2.07
RFX3P48380 NRBF2P1-201ENST00000587407 859 ntBASIC2.09□□□□□ -2.07
RFX3P48380 BX546450.2-201ENST00000602419 435 ntTSL 5 BASIC2.09□□□□□ -2.07
RFX3P48380 AC069294.1-201ENST00000608397 350 ntBASIC2.09□□□□□ -2.07
RFX3P48380 AC245297.3-203ENST00000612135 405 ntTSL 5 BASIC2.09□□□□□ -2.07
RFX3P48380 AL050303.3-201ENST00000613704 284 ntBASIC2.09□□□□□ -2.07
RFX3P48380 AC021755.4-201ENST00000616620 456 ntBASIC2.09□□□□□ -2.07
RFX3P48380 AL449363.1-201ENST00000617815 186 ntBASIC2.09□□□□□ -2.07
RFX3P48380 MIR6873-201ENST00000622788 63 ntBASIC2.09□□□□□ -2.07
RFX3P48380 AC064859.1-201ENST00000624741 174 ntBASIC2.09□□□□□ -2.07
RFX3P48380 AC025048.6-202ENST00000627667 438 ntBASIC2.09□□□□□ -2.07
RFX3P48380 ZNF451-208ENST00000491832 3632 ntAPPRIS ALT2 TSL 1 (best) BASIC2.09□□□□□ -2.07
RFX3P48380 USP53-202ENST00000450251 6072 ntAPPRIS P1 TSL 5 BASIC2.09□□□□□ -2.08
RFX3P48380 AC104454.1-201ENST00000421341 1401 ntBASIC2.08□□□□□ -2.08
RFX3P48380 CKAP2P1-201ENST00000555477 2049 ntBASIC2.08□□□□□ -2.08
RFX3P48380 SNORA6-201ENST00000384033 151 ntBASIC2.08□□□□□ -2.08
RFX3P48380 AF130351.1-202ENST00000400562 808 ntAPPRIS P5 TSL 3 BASIC2.08□□□□□ -2.08
RFX3P48380 NDUFS5P1-201ENST00000405668 289 ntBASIC2.08□□□□□ -2.08
RFX3P48380 RNU4-53P-201ENST00000410828 140 ntBASIC2.08□□□□□ -2.08
RFX3P48380 ELOCP17-201ENST00000414751 326 ntBASIC2.08□□□□□ -2.08
RFX3P48380 AC007179.1-201ENST00000415159 438 ntTSL 3 BASIC2.08□□□□□ -2.08
RFX3P48380 MORF4L1P6-201ENST00000418771 268 ntBASIC2.08□□□□□ -2.08
RFX3P48380 BX276092.3-201ENST00000424182 230 ntBASIC2.08□□□□□ -2.08
RFX3P48380 LINC01724-201ENST00000430519 621 ntTSL 3 BASIC2.08□□□□□ -2.08
RFX3P48380 AL356277.3-201ENST00000432484 618 ntTSL 3 BASIC2.08□□□□□ -2.08
RFX3P48380 AC013269.3-201ENST00000450486 444 ntTSL 3 BASIC2.08□□□□□ -2.08
RFX3P48380 FGF14-AS1-202ENST00000451630 321 ntTSL 2 BASIC2.08□□□□□ -2.08
RFX3P48380 OR6C5P-201ENST00000452388 923 ntBASIC2.08□□□□□ -2.08
RFX3P48380 AC092620.2-201ENST00000458007 744 ntTSL 2 BASIC2.08□□□□□ -2.08
RFX3P48380 SNORD97-201ENST00000459187 142 ntBASIC2.08□□□□□ -2.08
RFX3P48380 AP001324.2-201ENST00000461163 319 ntBASIC2.08□□□□□ -2.08
RFX3P48380 AC005150.1-201ENST00000512831 628 ntTSL 2 BASIC2.08□□□□□ -2.08
RFX3P48380 PCAT4-202ENST00000514836 373 ntTSL 3 BASIC2.08□□□□□ -2.08
RFX3P48380 RNU6-678P-201ENST00000516832 109 ntBASIC2.08□□□□□ -2.08
RFX3P48380 AC113145.1-201ENST00000522408 412 ntTSL 5 BASIC2.08□□□□□ -2.08
RFX3P48380 NAP1L1P1-201ENST00000524793 1063 ntBASIC2.08□□□□□ -2.08
RFX3P48380 AL133166.1-201ENST00000551040 1034 ntTSL 4 BASIC2.08□□□□□ -2.08
RFX3P48380 AC091544.4-201ENST00000555268 342 ntBASIC2.08□□□□□ -2.08
RFX3P48380 AL513324.1-201ENST00000575236 632 ntTSL 5 BASIC2.08□□□□□ -2.08
RFX3P48380 AC019183.1-201ENST00000580524 505 ntTSL 3 BASIC2.08□□□□□ -2.08
RFX3P48380 AL670379.6-201ENST00000603753 252 ntBASIC2.08□□□□□ -2.08
RFX3P48380 AL670379.11-201ENST00000604059 253 ntBASIC2.08□□□□□ -2.08
RFX3P48380 AC008162.1-201ENST00000604718 254 ntBASIC2.08□□□□□ -2.08
Retrieved 100 of 98,524 protein–RNA pairs in 104.3 ms