Protein–RNA interactions for Protein: P18827

SDC1, Syndecan-1, humanhuman

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1P18827 AL122016.1-201ENST00000403365 367 ntBASIC2.35□□□□□ -2.03
SDC1P18827 RNU6-193P-201ENST00000410977 107 ntBASIC2.35□□□□□ -2.03
SDC1P18827 BX682237.1-201ENST00000415016 335 ntBASIC2.35□□□□□ -2.03
SDC1P18827 AF241725.1-201ENST00000416182 480 ntTSL 3 BASIC2.35□□□□□ -2.03
SDC1P18827 AL353729.1-201ENST00000425044 720 ntBASIC2.35□□□□□ -2.03
SDC1P18827 ISCA1P6-201ENST00000427740 390 ntBASIC2.35□□□□□ -2.03
SDC1P18827 AL445488.1-202ENST00000430623 545 ntTSL 3 BASIC2.35□□□□□ -2.03
SDC1P18827 AC020571.1-201ENST00000430904 768 ntTSL 2 BASIC2.35□□□□□ -2.03
SDC1P18827 AC098826.1-201ENST00000433943 471 ntBASIC2.35□□□□□ -2.03
SDC1P18827 AL031667.1-201ENST00000440222 725 ntBASIC2.35□□□□□ -2.03
SDC1P18827 AC025750.2-201ENST00000442609 450 ntBASIC2.35□□□□□ -2.03
SDC1P18827 RPS15AP27-201ENST00000449183 343 ntBASIC2.35□□□□□ -2.03
SDC1P18827 snoU13.22-201ENST00000459428 104 ntBASIC2.35□□□□□ -2.03
SDC1P18827 RPS3AP14-201ENST00000483907 780 ntBASIC2.35□□□□□ -2.03
SDC1P18827 AC105252.1-201ENST00000503089 286 ntBASIC2.35□□□□□ -2.03
SDC1P18827 RPS3A-208ENST00000509736 576 ntTSL 2 BASIC2.35□□□□□ -2.03
SDC1P18827 RN7SKP24-201ENST00000515888 284 ntBASIC2.35□□□□□ -2.03
SDC1P18827 RNU6ATAC13P-201ENST00000516152 131 ntBASIC2.35□□□□□ -2.03
SDC1P18827 SCARNA24.1-201ENST00000516465 137 ntBASIC2.35□□□□□ -2.03
SDC1P18827 Vault.3-201ENST00000516676 95 ntBASIC2.35□□□□□ -2.03
SDC1P18827 Y_RNA.695-201ENST00000516715 107 ntBASIC2.35□□□□□ -2.03
SDC1P18827 RNU6-914P-201ENST00000516749 109 ntBASIC2.35□□□□□ -2.03
SDC1P18827 RNU6-703P-201ENST00000516946 107 ntBASIC2.35□□□□□ -2.03
SDC1P18827 AP002453.2-201ENST00000533503 320 ntBASIC2.35□□□□□ -2.03
SDC1P18827 AC107023.1-201ENST00000552757 356 ntTSL 5 BASIC2.35□□□□□ -2.03
SDC1P18827 AC020661.3-201ENST00000558101 414 ntTSL 3 BASIC2.35□□□□□ -2.03
SDC1P18827 AL355877.2-201ENST00000603670 358 ntBASIC2.35□□□□□ -2.03
SDC1P18827 AC090578.1-201ENST00000604955 591 ntBASIC2.35□□□□□ -2.03
SDC1P18827 CERS6-AS1-209ENST00000609766 642 ntTSL 5 BASIC2.35□□□□□ -2.03
SDC1P18827 AC135507.2-201ENST00000612443 309 ntBASIC2.35□□□□□ -2.03
SDC1P18827 AC159540.2-206ENST00000619371 355 ntTSL 3 BASIC2.35□□□□□ -2.03
SDC1P18827 AC092608.2-201ENST00000624427 218 ntBASIC2.35□□□□□ -2.03
SDC1P18827 AL512643.1-201ENST00000635735 524 ntBASIC2.35□□□□□ -2.03
SDC1P18827 Clostridiales-1.2-201ENST00000636724 160 ntBASIC2.35□□□□□ -2.03
SDC1P18827 DLD-214ENST00000639772 421 ntTSL 5 BASIC2.35□□□□□ -2.03
SDC1P18827 CDK1-202ENST00000373809 1613 ntTSL 1 (best) BASIC2.35□□□□□ -2.03
SDC1P18827 ELL2P3-201ENST00000457883 1602 ntBASIC2.35□□□□□ -2.03
SDC1P18827 BCHE-201ENST00000264381 2454 ntAPPRIS P1 TSL 1 (best) BASIC2.34□□□□□ -2.03
SDC1P18827 AC007336.1-201ENST00000576365 3828 ntBASIC2.34□□□□□ -2.03
SDC1P18827 OR51A4-202ENST00000641898 4393 ntAPPRIS P1 BASIC2.34□□□□□ -2.03
SDC1P18827 TEX21P-201ENST00000447107 1476 ntBASIC2.34□□□□□ -2.03
SDC1P18827 ZBBX-202ENST00000392764 2849 ntAPPRIS ALT2 TSL 1 (best) BASIC2.34□□□□□ -2.03
SDC1P18827 RNU6-169P-201ENST00000365336 107 ntBASIC2.34□□□□□ -2.03
SDC1P18827 SNORA4.3-201ENST00000365564 137 ntBASIC2.34□□□□□ -2.03
SDC1P18827 RNU6-658P-201ENST00000384606 106 ntBASIC2.34□□□□□ -2.03
SDC1P18827 EIF4EBP2P3-201ENST00000403144 334 ntBASIC2.34□□□□□ -2.03
SDC1P18827 SNORA11.1-201ENST00000408133 129 ntBASIC2.34□□□□□ -2.03
SDC1P18827 MIR1302-8-201ENST00000408342 128 ntBASIC2.34□□□□□ -2.03
SDC1P18827 AC114491.1-201ENST00000416095 246 ntBASIC2.34□□□□□ -2.03
SDC1P18827 AL138737.1-202ENST00000418834 876 ntTSL 3 BASIC2.34□□□□□ -2.03
SDC1P18827 AC098614.2-201ENST00000426040 255 ntBASIC2.34□□□□□ -2.03
SDC1P18827 MED13P1-201ENST00000428342 171 ntBASIC2.34□□□□□ -2.03
SDC1P18827 HMGB1P9-201ENST00000429856 646 ntBASIC2.34□□□□□ -2.03
SDC1P18827 AL162725.2-201ENST00000430545 748 ntTSL 5 BASIC2.34□□□□□ -2.03
SDC1P18827 RPL23AP30-201ENST00000432419 501 ntBASIC2.34□□□□□ -2.03
SDC1P18827 AL356277.3-201ENST00000432484 618 ntTSL 3 BASIC2.34□□□□□ -2.03
SDC1P18827 LINC02195-201ENST00000443373 294 ntTSL 3 BASIC2.34□□□□□ -2.03
SDC1P18827 HTR2A-AS1-202ENST00000452352 384 ntTSL 2 BASIC2.34□□□□□ -2.03
SDC1P18827 AC073901.1-201ENST00000462471 408 ntBASIC2.34□□□□□ -2.03
SDC1P18827 LINC01997-201ENST00000494900 429 ntTSL 2 BASIC2.34□□□□□ -2.03
SDC1P18827 AC026780.2-201ENST00000503489 730 ntTSL 5 BASIC2.34□□□□□ -2.03
SDC1P18827 AC097467.3-212ENST00000512269 568 ntTSL 3 BASIC2.34□□□□□ -2.03
SDC1P18827 AC093206.1-201ENST00000515364 497 ntTSL 3 BASIC2.34□□□□□ -2.03
SDC1P18827 Y_RNA.688-201ENST00000516565 95 ntBASIC2.34□□□□□ -2.03
SDC1P18827 Y_RNA.689-201ENST00000516589 107 ntBASIC2.34□□□□□ -2.03
SDC1P18827 SNORA18.6-201ENST00000516792 115 ntBASIC2.34□□□□□ -2.03
SDC1P18827 AC026241.1-201ENST00000517873 2142 ntBASIC2.34□□□□□ -2.03
SDC1P18827 IGHVII-62-1-201ENST00000519283 235 ntBASIC2.34□□□□□ -2.03
SDC1P18827 AC009902.1-201ENST00000519351 183 ntBASIC2.34□□□□□ -2.03
SDC1P18827 VBP1-203ENST00000535916 944 ntTSL 2 BASIC2.34□□□□□ -2.03
SDC1P18827 GLYCAM1-201ENST00000546596 285 ntBASIC2.34□□□□□ -2.03
SDC1P18827 AC090531.1-202ENST00000548450 499 ntTSL 3 BASIC2.34□□□□□ -2.03
SDC1P18827 AC008741.1-201ENST00000569456 510 ntTSL 3 BASIC2.34□□□□□ -2.03
SDC1P18827 AC137800.2-201ENST00000574375 120 ntBASIC2.34□□□□□ -2.03
SDC1P18827 AC024619.4-201ENST00000580924 316 ntBASIC2.34□□□□□ -2.03
SDC1P18827 MIR3682-201ENST00000581338 84 ntBASIC2.34□□□□□ -2.03
SDC1P18827 AC005498.1-201ENST00000592125 465 ntBASIC2.34□□□□□ -2.03
SDC1P18827 LINC01533-205ENST00000593056 607 ntTSL 3 BASIC2.34□□□□□ -2.03
SDC1P18827 AL157786.1-204ENST00000594870 506 ntTSL 3 BASIC2.34□□□□□ -2.03
SDC1P18827 AC073544.2-201ENST00000601155 540 ntBASIC2.34□□□□□ -2.03
SDC1P18827 RPL12P50-201ENST00000603116 116 ntBASIC2.34□□□□□ -2.03
SDC1P18827 AL645944.1-201ENST00000603857 493 ntBASIC2.34□□□□□ -2.03
SDC1P18827 AL355598.1-201ENST00000604169 202 ntBASIC2.34□□□□□ -2.03
SDC1P18827 AC064872.1-201ENST00000604823 1072 ntBASIC2.34□□□□□ -2.03
SDC1P18827 AC007938.3-201ENST00000604965 623 ntBASIC2.34□□□□□ -2.03
SDC1P18827 AC005000.2-201ENST00000605468 310 ntBASIC2.34□□□□□ -2.03
SDC1P18827 NCRUPAR_2.1-201ENST00000616308 99 ntBASIC2.34□□□□□ -2.03
SDC1P18827 Z69908.1-201ENST00000622603 247 ntBASIC2.34□□□□□ -2.03
SDC1P18827 FARSBP1-201ENST00000435808 1778 ntBASIC2.33□□□□□ -2.04
SDC1P18827 CACNB4-228ENST00000636598 7808 ntTSL 5 BASIC2.33□□□□□ -2.04
SDC1P18827 NACAP2-201ENST00000318548 624 ntBASIC2.33□□□□□ -2.04
SDC1P18827 IL36B-202ENST00000327407 1052 ntAPPRIS P1 TSL 1 (best) BASIC2.33□□□□□ -2.04
SDC1P18827 SNORA41-201ENST00000384675 132 ntBASIC2.33□□□□□ -2.04
SDC1P18827 MIR518C-201ENST00000384822 101 ntBASIC2.33□□□□□ -2.04
SDC1P18827 RNU2-39P-201ENST00000410604 198 ntBASIC2.33□□□□□ -2.04
SDC1P18827 RNU2-25P-201ENST00000411041 191 ntBASIC2.33□□□□□ -2.04
SDC1P18827 SPATA17-AS1-201ENST00000415765 420 ntTSL 5 BASIC2.33□□□□□ -2.04
SDC1P18827 AC002456.1-201ENST00000415965 317 ntTSL 5 BASIC2.33□□□□□ -2.04
SDC1P18827 AL109913.1-201ENST00000421173 514 ntBASIC2.33□□□□□ -2.04
SDC1P18827 AC016710.1-201ENST00000421326 466 ntTSL 3 BASIC2.33□□□□□ -2.04
Retrieved 100 of 98,524 protein–RNA pairs in 89.4 ms