Protein–RNA interactions for Protein: P17096

HMGA1, High mobility group protein HMG-I/HMG-Y, humanhuman

Known RBP Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1P17096 AGR3-202ENST00000402239 563 ntTSL 2 BASIC0.58□□□□□ -2.32
HMGA1P17096 AC099677.1-201ENST00000420575 175 ntBASIC0.58□□□□□ -2.32
HMGA1P17096 EIF4EP2-201ENST00000422816 654 ntBASIC0.58□□□□□ -2.32
HMGA1P17096 CR848007.2-201ENST00000424918 787 ntBASIC0.58□□□□□ -2.32
HMGA1P17096 AC092813.2-201ENST00000434540 399 ntTSL 3 BASIC0.58□□□□□ -2.32
HMGA1P17096 PRPS1P1-201ENST00000445305 876 ntBASIC0.58□□□□□ -2.32
HMGA1P17096 DDX3P2-201ENST00000446138 111 ntBASIC0.58□□□□□ -2.32
HMGA1P17096 LNCPRESS2-201ENST00000502518 616 ntTSL 5 BASIC0.58□□□□□ -2.32
HMGA1P17096 RNA5SP112-201ENST00000515937 99 ntBASIC0.58□□□□□ -2.32
HMGA1P17096 RNU6-319P-201ENST00000516025 108 ntBASIC0.58□□□□□ -2.32
HMGA1P17096 AC103853.2-201ENST00000519805 716 ntTSL 3 BASIC0.58□□□□□ -2.32
HMGA1P17096 LINC01195-201ENST00000570118 451 ntTSL 3 BASIC0.58□□□□□ -2.32
HMGA1P17096 AC099842.1-201ENST00000619919 596 ntBASIC0.58□□□□□ -2.32
HMGA1P17096 IST1-227ENST00000626438 126 ntTSL 5 BASIC0.58□□□□□ -2.32
HMGA1P17096 LINC01938-201ENST00000521341 1864 ntTSL 2 BASIC0.57□□□□□ -2.32
HMGA1P17096 SNORD65-201ENST00000391079 73 ntBASIC0.57□□□□□ -2.32
HMGA1P17096 RNU6-712P-201ENST00000410558 100 ntBASIC0.57□□□□□ -2.32
HMGA1P17096 AL391069.1-201ENST00000422153 358 ntTSL 3 BASIC0.57□□□□□ -2.32
HMGA1P17096 NAALADL2-AS2-201ENST00000424690 1038 ntTSL 5 BASIC0.57□□□□□ -2.32
HMGA1P17096 AC114808.2-201ENST00000428335 536 ntTSL 4 BASIC0.57□□□□□ -2.32
HMGA1P17096 MYCBP2-AS2-201ENST00000428716 428 ntTSL 5 BASIC0.57□□□□□ -2.32
HMGA1P17096 MTND2P29-201ENST00000438595 412 ntBASIC0.57□□□□□ -2.32
HMGA1P17096 ARPC3P5-201ENST00000448802 534 ntBASIC0.57□□□□□ -2.32
HMGA1P17096 RNF138P1-201ENST00000502765 546 ntBASIC0.57□□□□□ -2.32
HMGA1P17096 UBL5P1-201ENST00000507979 193 ntBASIC0.57□□□□□ -2.32
HMGA1P17096 SNORA4.4-201ENST00000515921 135 ntBASIC0.57□□□□□ -2.32
HMGA1P17096 AP003484.1-201ENST00000530974 250 ntBASIC0.57□□□□□ -2.32
HMGA1P17096 MTCYBP27-201ENST00000555160 670 ntBASIC0.57□□□□□ -2.32
HMGA1P17096 AC011712.1-201ENST00000588959 234 ntBASIC0.57□□□□□ -2.32
HMGA1P17096 AC008443.7-201ENST00000622195 246 ntBASIC0.57□□□□□ -2.32
HMGA1P17096 HECTD2-202ENST00000371667 4354 ntTSL 1 (best) BASIC0.57□□□□□ -2.32
HMGA1P17096 Y_RNA.36-201ENST00000362602 112 ntBASIC0.56□□□□□ -2.32
HMGA1P17096 TXNDC8-202ENST00000374510 455 ntAPPRIS P2 TSL 1 (best) BASIC0.56□□□□□ -2.32
HMGA1P17096 RNU6-516P-201ENST00000411381 104 ntBASIC0.56□□□□□ -2.32
HMGA1P17096 KRTAP25-1-201ENST00000416044 370 ntAPPRIS P1 BASIC0.56□□□□□ -2.32
HMGA1P17096 AL161935.1-201ENST00000420945 421 ntTSL 3 BASIC0.56□□□□□ -2.32
HMGA1P17096 AC241644.2-201ENST00000426504 480 ntTSL 3 BASIC0.56□□□□□ -2.32
HMGA1P17096 AC012497.1-201ENST00000429392 575 ntBASIC0.56□□□□□ -2.32
HMGA1P17096 RPL7P34-201ENST00000433316 712 ntBASIC0.56□□□□□ -2.32
HMGA1P17096 AL161651.1-201ENST00000440882 223 ntBASIC0.56□□□□□ -2.32
HMGA1P17096 AL592161.1-201ENST00000456389 861 ntTSL 3 BASIC0.56□□□□□ -2.32
HMGA1P17096 HMGB1P36-201ENST00000487709 576 ntBASIC0.56□□□□□ -2.32
HMGA1P17096 AC104806.1-201ENST00000508720 308 ntBASIC0.56□□□□□ -2.32
HMGA1P17096 AC233702.2-202ENST00000562547 291 ntBASIC0.56□□□□□ -2.32
HMGA1P17096 AC245748.3-201ENST00000588710 241 ntTSL 3 BASIC0.56□□□□□ -2.32
HMGA1P17096 AC008121.1-201ENST00000603244 268 ntBASIC0.56□□□□□ -2.32
HMGA1P17096 AL391646.1-201ENST00000603860 190 ntBASIC0.56□□□□□ -2.32
HMGA1P17096 AC069294.1-201ENST00000608397 350 ntBASIC0.56□□□□□ -2.32
HMGA1P17096 AC104763.3-201ENST00000613765 618 ntBASIC0.56□□□□□ -2.32
HMGA1P17096 ELL2P3-201ENST00000457883 1602 ntBASIC0.56□□□□□ -2.32
HMGA1P17096 OR8H1-201ENST00000313022 1038 ntAPPRIS P2 BASIC0.55□□□□□ -2.32
HMGA1P17096 RNU6-26P-201ENST00000383985 107 ntBASIC0.55□□□□□ -2.32
HMGA1P17096 RNU6-16P-201ENST00000384385 107 ntBASIC0.55□□□□□ -2.32
HMGA1P17096 RNU6-1035P-201ENST00000384477 107 ntBASIC0.55□□□□□ -2.32
HMGA1P17096 MIR518A2-201ENST00000384966 87 ntBASIC0.55□□□□□ -2.32
HMGA1P17096 MIR7-2-201ENST00000384970 110 ntBASIC0.55□□□□□ -2.32
HMGA1P17096 AL161935.3-201ENST00000433770 347 ntTSL 2 BASIC0.55□□□□□ -2.32
HMGA1P17096 AL135923.2-201ENST00000435444 501 ntTSL 2 BASIC0.55□□□□□ -2.32
HMGA1P17096 YWHAZP8-201ENST00000436935 731 ntBASIC0.55□□□□□ -2.32
HMGA1P17096 AL390879.2-204ENST00000438602 582 ntTSL 3 BASIC0.55□□□□□ -2.32
HMGA1P17096 AC112492.4-201ENST00000456549 352 ntBASIC0.55□□□□□ -2.32
HMGA1P17096 AC010789.1-201ENST00000458489 291 ntTSL 5 BASIC0.55□□□□□ -2.32
HMGA1P17096 RPL9P9-202ENST00000466501 579 ntBASIC0.55□□□□□ -2.32
HMGA1P17096 AF213884.2-201ENST00000510417 903 ntBASIC0.55□□□□□ -2.32
HMGA1P17096 RNU6-496P-201ENST00000516145 99 ntBASIC0.55□□□□□ -2.32
HMGA1P17096 ACA64.5-201ENST00000516207 127 ntBASIC0.55□□□□□ -2.32
HMGA1P17096 AC068880.2-201ENST00000521016 362 ntTSL 5 BASIC0.55□□□□□ -2.32
HMGA1P17096 AC090124.1-201ENST00000525097 448 ntTSL 3 BASIC0.55□□□□□ -2.32
HMGA1P17096 CASP1-212ENST00000531166 300 ntTSL 5 BASIC0.55□□□□□ -2.32
HMGA1P17096 AC021739.1-201ENST00000559631 174 ntBASIC0.55□□□□□ -2.32
HMGA1P17096 CALCRL-202ENST00000409998 5223 ntAPPRIS P1 TSL 5 BASIC0.54□□□□□ -2.32
HMGA1P17096 ZNF883-201ENST00000619044 2051 ntAPPRIS P1 TSL 5 BASIC0.54□□□□□ -2.32
HMGA1P17096 SNORA4.1-201ENST00000364263 144 ntBASIC0.54□□□□□ -2.32
HMGA1P17096 RNU6-439P-201ENST00000384188 106 ntBASIC0.54□□□□□ -2.32
HMGA1P17096 RNY1P4-201ENST00000384595 115 ntBASIC0.54□□□□□ -2.32
HMGA1P17096 MIR92A1-201ENST00000385233 78 ntBASIC0.54□□□□□ -2.32
HMGA1P17096 RNU2-49P-201ENST00000410666 184 ntBASIC0.54□□□□□ -2.32
HMGA1P17096 AC069282.1-201ENST00000411911 526 ntBASIC0.54□□□□□ -2.32
HMGA1P17096 AC009518.2-201ENST00000418056 731 ntBASIC0.54□□□□□ -2.32
HMGA1P17096 EBAG9P1-201ENST00000418955 543 ntBASIC0.54□□□□□ -2.32
HMGA1P17096 AC107081.2-201ENST00000425779 802 ntTSL 5 BASIC0.54□□□□□ -2.32
HMGA1P17096 AC097467.3-213ENST00000508191 726 ntTSL 3 BASIC0.54□□□□□ -2.32
HMGA1P17096 RNU6-229P-201ENST00000516614 102 ntBASIC0.54□□□□□ -2.32
HMGA1P17096 AC005730.3-201ENST00000583067 366 ntBASIC0.54□□□□□ -2.32
HMGA1P17096 AC023490.1-201ENST00000614584 375 ntTSL 2 BASIC0.54□□□□□ -2.32
HMGA1P17096 AL133370.2-201ENST00000619934 439 ntBASIC0.54□□□□□ -2.32
HMGA1P17096 AC011718.1-201ENST00000622906 375 ntTSL 1 (best) BASIC0.54□□□□□ -2.32
HMGA1P17096 FKTN-204ENST00000448551 1700 ntTSL 2 BASIC0.53□□□□□ -2.32
HMGA1P17096 RNU6-1251P-201ENST00000364502 107 ntBASIC0.53□□□□□ -2.32
HMGA1P17096 RNU6-339P-201ENST00000384310 107 ntBASIC0.53□□□□□ -2.32
HMGA1P17096 TRAJ23-201ENST00000390514 63 ntAPPRIS P1 BASIC0.53□□□□□ -2.32
HMGA1P17096 NDUFS5P1-201ENST00000405668 289 ntBASIC0.53□□□□□ -2.32
HMGA1P17096 MTATP6P31-201ENST00000406985 692 ntBASIC0.53□□□□□ -2.32
HMGA1P17096 SNORA81-201ENST00000408493 178 ntBASIC0.53□□□□□ -2.32
HMGA1P17096 AC004594.1-217ENST00000422260 325 ntTSL 2 BASIC0.53□□□□□ -2.32
HMGA1P17096 CST2P1-201ENST00000425770 87 ntBASIC0.53□□□□□ -2.32
HMGA1P17096 VPS26A-206ENST00000489794 928 ntTSL 3 BASIC0.53□□□□□ -2.32
HMGA1P17096 AL359273.1-202ENST00000505585 905 ntTSL 1 (best) BASIC0.53□□□□□ -2.32
HMGA1P17096 HMGN2P15-201ENST00000585707 270 ntBASIC0.53□□□□□ -2.32
HMGA1P17096 MTCYBP22-201ENST00000603788 447 ntBASIC0.53□□□□□ -2.32
Retrieved 100 of 98,524 protein–RNA pairs in 107.3 ms