Protein–RNA interactions for Protein: Q9H4Z3

PCIF1, Phosphorylated CTD-interacting factor 1, humanhuman

Predictions only

Length 704 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCIF1Q9H4Z3 Y_RNA.33-201ENST00000362591 102 ntBASIC4.05□□□□□ -1.76
PCIF1Q9H4Z3 Y_RNA.128-201ENST00000363391 112 ntBASIC4.05□□□□□ -1.76
PCIF1Q9H4Z3 Y_RNA.216-201ENST00000364205 93 ntBASIC4.05□□□□□ -1.76
PCIF1Q9H4Z3 RNA5SP189-201ENST00000364920 115 ntBASIC4.05□□□□□ -1.76
PCIF1Q9H4Z3 RNU6-395P-201ENST00000365662 106 ntBASIC4.05□□□□□ -1.76
PCIF1Q9H4Z3 RNU6-741P-201ENST00000383889 107 ntBASIC4.05□□□□□ -1.76
PCIF1Q9H4Z3 HMGN2P8-201ENST00000391458 268 ntBASIC4.05□□□□□ -1.76
PCIF1Q9H4Z3 AL391417.1-201ENST00000404100 426 ntBASIC4.05□□□□□ -1.76
PCIF1Q9H4Z3 RN7SKP202-201ENST00000410439 330 ntBASIC4.05□□□□□ -1.76
PCIF1Q9H4Z3 RNU6-1025P-201ENST00000410629 104 ntBASIC4.05□□□□□ -1.76
PCIF1Q9H4Z3 LINC01737-201ENST00000412647 403 ntTSL 1 (best) BASIC4.05□□□□□ -1.76
PCIF1Q9H4Z3 LINC00279-201ENST00000413486 473 ntTSL 3 BASIC4.05□□□□□ -1.76
PCIF1Q9H4Z3 AC003092.1-201ENST00000415536 639 ntTSL 3 BASIC4.05□□□□□ -1.76
PCIF1Q9H4Z3 AC245054.2-201ENST00000415639 319 ntBASIC4.05□□□□□ -1.76
PCIF1Q9H4Z3 ATG3P1-201ENST00000419507 911 ntBASIC4.05□□□□□ -1.76
PCIF1Q9H4Z3 AL139254.1-201ENST00000421114 376 ntTSL 3 BASIC4.05□□□□□ -1.76
PCIF1Q9H4Z3 KCNMA1-AS2-201ENST00000428936 427 ntTSL 3 BASIC4.05□□□□□ -1.76
PCIF1Q9H4Z3 HMGB1P9-201ENST00000429856 646 ntBASIC4.05□□□□□ -1.76
PCIF1Q9H4Z3 MYL8P-204ENST00000431574 518 ntBASIC4.05□□□□□ -1.76
PCIF1Q9H4Z3 GPM6BP2-201ENST00000432046 144 ntBASIC4.05□□□□□ -1.76
PCIF1Q9H4Z3 AL158209.1-201ENST00000433460 439 ntTSL 3 BASIC4.05□□□□□ -1.76
PCIF1Q9H4Z3 VDAC1P3-201ENST00000434069 851 ntBASIC4.05□□□□□ -1.76
PCIF1Q9H4Z3 PIGFP3-201ENST00000441918 722 ntBASIC4.05□□□□□ -1.76
PCIF1Q9H4Z3 GPM6BP1-201ENST00000446387 144 ntBASIC4.05□□□□□ -1.76
PCIF1Q9H4Z3 AP000926.1-201ENST00000479573 241 ntBASIC4.05□□□□□ -1.76
PCIF1Q9H4Z3 AC026801.1-201ENST00000497178 464 ntBASIC4.05□□□□□ -1.76
PCIF1Q9H4Z3 AC104304.1-201ENST00000505797 291 ntAPPRIS P1 TSL 3 BASIC4.05□□□□□ -1.76
PCIF1Q9H4Z3 AC093303.1-201ENST00000514549 295 ntBASIC4.05□□□□□ -1.76
PCIF1Q9H4Z3 RNA5SP290-201ENST00000517133 127 ntBASIC4.05□□□□□ -1.76
PCIF1Q9H4Z3 RNU1-45P-201ENST00000517191 141 ntBASIC4.05□□□□□ -1.76
PCIF1Q9H4Z3 AC104393.1-201ENST00000517495 255 ntTSL 3 BASIC4.05□□□□□ -1.76
PCIF1Q9H4Z3 LINC02155-201ENST00000519215 407 ntTSL 5 BASIC4.05□□□□□ -1.76
PCIF1Q9H4Z3 AC090281.1-201ENST00000523019 276 ntBASIC4.05□□□□□ -1.76
PCIF1Q9H4Z3 AC007948.1-201ENST00000581632 242 ntTSL 5 BASIC4.05□□□□□ -1.76
PCIF1Q9H4Z3 MIR5187-201ENST00000583479 76 ntBASIC4.05□□□□□ -1.76
PCIF1Q9H4Z3 SNRPGP17-201ENST00000603780 214 ntBASIC4.05□□□□□ -1.76
PCIF1Q9H4Z3 AL121772.2-201ENST00000614331 297 ntBASIC4.05□□□□□ -1.76
PCIF1Q9H4Z3 AC244517.12-201ENST00000623581 663 ntBASIC4.05□□□□□ -1.76
PCIF1Q9H4Z3 KPNA2P1-201ENST00000458289 1591 ntBASIC4.05□□□□□ -1.76
PCIF1Q9H4Z3 ZSCAN26-204ENST00000614088 2321 ntTSL 3 BASIC4.05□□□□□ -1.76
PCIF1Q9H4Z3 NCAPGP1-201ENST00000505112 1814 ntBASIC4.05□□□□□ -1.76
PCIF1Q9H4Z3 AC008568.2-201ENST00000623862 2313 ntBASIC4.04□□□□□ -1.76
PCIF1Q9H4Z3 CNTN6-201ENST00000350110 3814 ntAPPRIS P1 TSL 1 (best) BASIC4.04□□□□□ -1.76
PCIF1Q9H4Z3 RNU6-593P-201ENST00000364716 112 ntBASIC4.04□□□□□ -1.76
PCIF1Q9H4Z3 RPL5P18-201ENST00000406671 891 ntBASIC4.04□□□□□ -1.76
PCIF1Q9H4Z3 AC079163.1-201ENST00000418416 407 ntTSL 2 BASIC4.04□□□□□ -1.76
PCIF1Q9H4Z3 AL158156.1-201ENST00000422509 473 ntBASIC4.04□□□□□ -1.76
PCIF1Q9H4Z3 FTH1P6-201ENST00000430768 320 ntBASIC4.04□□□□□ -1.76
PCIF1Q9H4Z3 ZFY-AS1-202ENST00000431145 419 ntTSL 3 BASIC4.04□□□□□ -1.76
PCIF1Q9H4Z3 AL355340.1-201ENST00000433085 344 ntTSL 3 BASIC4.04□□□□□ -1.76
PCIF1Q9H4Z3 RPL30P15-201ENST00000457129 321 ntBASIC4.04□□□□□ -1.76
PCIF1Q9H4Z3 Y_RNA.653-201ENST00000459091 95 ntBASIC4.04□□□□□ -1.76
PCIF1Q9H4Z3 Y_RNA.631-201ENST00000459607 101 ntBASIC4.04□□□□□ -1.76
PCIF1Q9H4Z3 MTCYBP40-201ENST00000509390 1135 ntBASIC4.04□□□□□ -1.76
PCIF1Q9H4Z3 AC116337.1-201ENST00000509680 687 ntBASIC4.04□□□□□ -1.76
PCIF1Q9H4Z3 VWA8P1-201ENST00000510889 176 ntBASIC4.04□□□□□ -1.76
PCIF1Q9H4Z3 AC092436.3-201ENST00000511788 257 ntBASIC4.04□□□□□ -1.76
PCIF1Q9H4Z3 AC023141.12-201ENST00000512399 199 ntBASIC4.04□□□□□ -1.76
PCIF1Q9H4Z3 AC069113.1-201ENST00000517763 267 ntBASIC4.04□□□□□ -1.76
PCIF1Q9H4Z3 AC023632.4-201ENST00000517783 191 ntBASIC4.04□□□□□ -1.76
PCIF1Q9H4Z3 ATP5F1P5-201ENST00000526403 760 ntBASIC4.04□□□□□ -1.76
PCIF1Q9H4Z3 ELOCP31-201ENST00000540463 467 ntBASIC4.04□□□□□ -1.76
PCIF1Q9H4Z3 AC009803.1-201ENST00000551531 416 ntTSL 3 BASIC4.04□□□□□ -1.76
PCIF1Q9H4Z3 AC026371.1-201ENST00000551867 419 ntBASIC4.04□□□□□ -1.76
PCIF1Q9H4Z3 AL360157.1-201ENST00000565962 87 ntBASIC4.04□□□□□ -1.76
PCIF1Q9H4Z3 CHEK2P2-203ENST00000566448 670 ntTSL 5 BASIC4.04□□□□□ -1.76
PCIF1Q9H4Z3 BNIP3P22-201ENST00000593399 556 ntBASIC4.04□□□□□ -1.76
PCIF1Q9H4Z3 NUTF2P8-201ENST00000604593 363 ntBASIC4.04□□□□□ -1.76
PCIF1Q9H4Z3 ELOCP5-201ENST00000604924 333 ntBASIC4.04□□□□□ -1.76
PCIF1Q9H4Z3 ATP5A1P2-202ENST00000616464 443 ntBASIC4.04□□□□□ -1.76
PCIF1Q9H4Z3 RMST_4.1-201ENST00000616886 107 ntBASIC4.04□□□□□ -1.76
PCIF1Q9H4Z3 HOTAIRM1_5.1-201ENST00000619311 145 ntBASIC4.04□□□□□ -1.76
PCIF1Q9H4Z3 AL669831.3-213ENST00000636676 183 ntBASIC4.04□□□□□ -1.76
PCIF1Q9H4Z3 AC119674.1-207ENST00000641355 633 ntBASIC4.04□□□□□ -1.76
PCIF1Q9H4Z3 RANBP6-201ENST00000259569 4576 ntAPPRIS P1 BASIC4.04□□□□□ -1.76
PCIF1Q9H4Z3 MTCO1P12-201ENST00000414273 1543 ntBASIC4.04□□□□□ -1.76
PCIF1Q9H4Z3 ZNF266-204ENST00000590306 3317 ntAPPRIS P1 TSL 1 (best) BASIC4.04□□□□□ -1.76
PCIF1Q9H4Z3 PCLO-206ENST00000437081 3786 ntTSL 1 (best) BASIC4.04□□□□□ -1.76
PCIF1Q9H4Z3 CD36-221ENST00000534394 1741 ntTSL 2 BASIC4.04□□□□□ -1.76
PCIF1Q9H4Z3 CCSER1-201ENST00000432775 3927 ntTSL 1 (best) BASIC4.03□□□□□ -1.76
PCIF1Q9H4Z3 MTND4P27-201ENST00000450813 1354 ntBASIC4.03□□□□□ -1.76
PCIF1Q9H4Z3 LINC01828-203ENST00000452716 3250 ntTSL 5 BASIC4.03□□□□□ -1.76
PCIF1Q9H4Z3 ORMDL1-201ENST00000325795 2692 ntAPPRIS P1 TSL 1 (best) BASIC4.03□□□□□ -1.76
PCIF1Q9H4Z3 CDH10-201ENST00000264463 3438 ntAPPRIS P1 TSL 1 (best) BASIC4.03□□□□□ -1.76
PCIF1Q9H4Z3 SNORA31-201ENST00000362607 130 ntBASIC4.03□□□□□ -1.76
PCIF1Q9H4Z3 RNA5SP124-201ENST00000362739 110 ntBASIC4.03□□□□□ -1.76
PCIF1Q9H4Z3 Y_RNA.146-201ENST00000363549 102 ntBASIC4.03□□□□□ -1.76
PCIF1Q9H4Z3 Y_RNA.187-201ENST00000363918 113 ntBASIC4.03□□□□□ -1.76
PCIF1Q9H4Z3 RNA5SP167-201ENST00000365461 116 ntBASIC4.03□□□□□ -1.76
PCIF1Q9H4Z3 RNU6-214P-201ENST00000384130 107 ntBASIC4.03□□□□□ -1.76
PCIF1Q9H4Z3 RNU1-89P-201ENST00000384592 164 ntBASIC4.03□□□□□ -1.76
PCIF1Q9H4Z3 RNU6-310P-201ENST00000384655 107 ntBASIC4.03□□□□□ -1.76
PCIF1Q9H4Z3 MIR134-201ENST00000385258 73 ntBASIC4.03□□□□□ -1.76
PCIF1Q9H4Z3 SNORD73A-201ENST00000386062 65 ntBASIC4.03□□□□□ -1.76
PCIF1Q9H4Z3 RPL31P12-201ENST00000422587 358 ntBASIC4.03□□□□□ -1.76
PCIF1Q9H4Z3 Z82205.1-201ENST00000428456 297 ntBASIC4.03□□□□□ -1.76
PCIF1Q9H4Z3 AL160411.1-201ENST00000429853 400 ntTSL 2 BASIC4.03□□□□□ -1.76
PCIF1Q9H4Z3 NOTCH2P1-201ENST00000443481 624 ntBASIC4.03□□□□□ -1.76
PCIF1Q9H4Z3 ELOCP24-201ENST00000456370 334 ntBASIC4.03□□□□□ -1.76
PCIF1Q9H4Z3 RN7SL542P-201ENST00000467147 294 ntBASIC4.03□□□□□ -1.76
Retrieved 100 of 98,524 protein–RNA pairs in 133 ms