Protein–RNA interactions for Protein: Q96DZ5

CLIP3, CAP-Gly domain-containing linker protein 3, humanhuman

Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3Q96DZ5 RNA5SP471-201ENST00000516971 106 ntBASIC4.03□□□□□ -1.76
CLIP3Q96DZ5 RNU6-1271P-201ENST00000517049 105 ntBASIC4.03□□□□□ -1.76
CLIP3Q96DZ5 PCED1B-AS1-208ENST00000551898 359 ntTSL 3 BASIC4.03□□□□□ -1.76
CLIP3Q96DZ5 AC026470.2-201ENST00000561492 181 ntBASIC4.03□□□□□ -1.76
CLIP3Q96DZ5 AC008521.1-201ENST00000587471 187 ntBASIC4.03□□□□□ -1.76
CLIP3Q96DZ5 AL161798.1-201ENST00000604630 131 ntBASIC4.03□□□□□ -1.76
CLIP3Q96DZ5 STARD13-AS-221ENST00000608197 604 ntTSL 5 BASIC4.03□□□□□ -1.76
CLIP3Q96DZ5 RBM39-201ENST00000253363 2488 ntAPPRIS P4 TSL 1 (best) BASIC4.03□□□□□ -1.76
CLIP3Q96DZ5 MTND5P30-201ENST00000452896 1731 ntBASIC4.03□□□□□ -1.76
CLIP3Q96DZ5 EIF2S1-202ENST00000466499 2390 ntAPPRIS P1 TSL 1 (best) BASIC4.03□□□□□ -1.76
CLIP3Q96DZ5 AC118273.1-201ENST00000525324 3006 ntBASIC4.03□□□□□ -1.77
CLIP3Q96DZ5 NLGN1-206ENST00000457714 8242 ntAPPRIS P1 TSL 1 (best) BASIC4.02□□□□□ -1.77
CLIP3Q96DZ5 AC103710.2-202ENST00000641454 2853 ntBASIC4.02□□□□□ -1.77
CLIP3Q96DZ5 AC087521.2-201ENST00000499066 2190 ntTSL 2 BASIC4.02□□□□□ -1.77
CLIP3Q96DZ5 GCSAML-203ENST00000366491 4130 ntAPPRIS ALT2 TSL 2 BASIC4.02□□□□□ -1.77
CLIP3Q96DZ5 AL049641.1-201ENST00000441055 1948 ntBASIC4.02□□□□□ -1.77
CLIP3Q96DZ5 OSBPL8-202ENST00000393249 7047 ntAPPRIS ALT1 TSL 1 (best) BASIC4.02□□□□□ -1.77
CLIP3Q96DZ5 RNU6-82P-201ENST00000363970 107 ntBASIC4.02□□□□□ -1.77
CLIP3Q96DZ5 Y_RNA.245-201ENST00000364493 95 ntBASIC4.02□□□□□ -1.77
CLIP3Q96DZ5 SET-203ENST00000372688 801 ntTSL 2 BASIC4.02□□□□□ -1.77
CLIP3Q96DZ5 RNU6-1040P-201ENST00000383974 107 ntBASIC4.02□□□□□ -1.77
CLIP3Q96DZ5 RNU6-1026P-201ENST00000384465 108 ntBASIC4.02□□□□□ -1.77
CLIP3Q96DZ5 PTMAP5-201ENST00000393073 333 ntBASIC4.02□□□□□ -1.77
CLIP3Q96DZ5 RN7SKP167-201ENST00000411047 285 ntBASIC4.02□□□□□ -1.77
CLIP3Q96DZ5 RHEBP3-201ENST00000411920 351 ntBASIC4.02□□□□□ -1.77
CLIP3Q96DZ5 AC080125.1-201ENST00000414888 684 ntBASIC4.02□□□□□ -1.77
CLIP3Q96DZ5 AC092809.3-201ENST00000415453 231 ntBASIC4.02□□□□□ -1.77
CLIP3Q96DZ5 ATG3P1-201ENST00000419507 911 ntBASIC4.02□□□□□ -1.77
CLIP3Q96DZ5 AL356134.1-201ENST00000419815 373 ntTSL 3 BASIC4.02□□□□□ -1.77
CLIP3Q96DZ5 AL591501.1-201ENST00000439992 495 ntTSL 5 BASIC4.02□□□□□ -1.77
CLIP3Q96DZ5 AL136097.1-201ENST00000456945 913 ntBASIC4.02□□□□□ -1.77
CLIP3Q96DZ5 AC046136.1-201ENST00000459855 533 ntTSL 3 BASIC4.02□□□□□ -1.77
CLIP3Q96DZ5 RPL7P5-201ENST00000471472 736 ntBASIC4.02□□□□□ -1.77
CLIP3Q96DZ5 AC099499.1-201ENST00000505040 558 ntTSL 3 BASIC4.02□□□□□ -1.77
CLIP3Q96DZ5 AC079140.5-201ENST00000507882 310 ntBASIC4.02□□□□□ -1.77
CLIP3Q96DZ5 AC104806.1-201ENST00000508720 308 ntBASIC4.02□□□□□ -1.77
CLIP3Q96DZ5 AC099522.1-202ENST00000514718 367 ntBASIC4.02□□□□□ -1.77
CLIP3Q96DZ5 RNU6-1282P-201ENST00000516735 96 ntBASIC4.02□□□□□ -1.77
CLIP3Q96DZ5 RNA5SP290-201ENST00000517133 127 ntBASIC4.02□□□□□ -1.77
CLIP3Q96DZ5 AL137161.1-201ENST00000532231 390 ntBASIC4.02□□□□□ -1.77
CLIP3Q96DZ5 OR8R1P-201ENST00000543943 764 ntBASIC4.02□□□□□ -1.77
CLIP3Q96DZ5 AC126177.2-201ENST00000552154 452 ntTSL 3 BASIC4.02□□□□□ -1.77
CLIP3Q96DZ5 OR11H5P-201ENST00000554039 926 ntBASIC4.02□□□□□ -1.77
CLIP3Q96DZ5 AC026992.1-202ENST00000558454 421 ntTSL 3 BASIC4.02□□□□□ -1.77
CLIP3Q96DZ5 AC046158.1-201ENST00000563408 719 ntTSL 3 BASIC4.02□□□□□ -1.77
CLIP3Q96DZ5 RPL23AP97-201ENST00000568955 471 ntBASIC4.02□□□□□ -1.77
CLIP3Q96DZ5 RPL7P50-201ENST00000600588 727 ntBASIC4.02□□□□□ -1.77
CLIP3Q96DZ5 LINC00907-211ENST00000601948 795 ntTSL 5 BASIC4.02□□□□□ -1.77
CLIP3Q96DZ5 AC080078.1-201ENST00000603643 410 ntTSL 3 BASIC4.02□□□□□ -1.77
CLIP3Q96DZ5 AL158032.1-201ENST00000605401 106 ntBASIC4.02□□□□□ -1.77
CLIP3Q96DZ5 UBE2Q2P6-201ENST00000612666 153 ntBASIC4.02□□□□□ -1.77
CLIP3Q96DZ5 AC027309.3-201ENST00000623419 351 ntBASIC4.02□□□□□ -1.77
CLIP3Q96DZ5 RNA5SP196-201ENST00000625967 102 ntBASIC4.02□□□□□ -1.77
CLIP3Q96DZ5 CCDC82-202ENST00000423339 1878 ntAPPRIS P2 TSL 1 (best) BASIC4.02□□□□□ -1.77
CLIP3Q96DZ5 TPTE2P4-201ENST00000258589 1605 ntBASIC4.02□□□□□ -1.77
CLIP3Q96DZ5 AMY2A-201ENST00000414303 1634 ntAPPRIS P1 TSL 1 (best) BASIC4.02□□□□□ -1.77
CLIP3Q96DZ5 EFTUD1P2-201ENST00000514817 1603 ntBASIC4.02□□□□□ -1.77
CLIP3Q96DZ5 DMD-230ENST00000620040 13746 ntAPPRIS ALT2 TSL 5 BASIC4.02□□□□□ -1.77
CLIP3Q96DZ5 EBAG9-210ENST00000620557 2186 ntAPPRIS P1 TSL 3 BASIC4.02□□□□□ -1.77
CLIP3Q96DZ5 ABCC9-201ENST00000261200 8293 ntAPPRIS P5 TSL 5 BASIC4.02□□□□□ -1.77
CLIP3Q96DZ5 LRRC49-224ENST00000560691 2531 ntTSL 2 BASIC4.01□□□□□ -1.77
CLIP3Q96DZ5 FAM169A-201ENST00000389156 5990 ntAPPRIS P1 TSL 1 (best) BASIC4.01□□□□□ -1.77
CLIP3Q96DZ5 RMDN2-205ENST00000407257 2280 ntTSL 5 BASIC4.01□□□□□ -1.77
CLIP3Q96DZ5 PIGW-206ENST00000620233 2264 ntAPPRIS P1 TSL 2 BASIC4.01□□□□□ -1.77
CLIP3Q96DZ5 ZNF43-207ENST00000595461 3399 ntAPPRIS ALT2 TSL 1 (best) BASIC4.01□□□□□ -1.77
CLIP3Q96DZ5 PSG8-202ENST00000401467 1686 ntTSL 5 BASIC4.01□□□□□ -1.77
CLIP3Q96DZ5 RNU6-1287P-201ENST00000362914 107 ntBASIC4.01□□□□□ -1.77
CLIP3Q96DZ5 RNU1-64P-201ENST00000365443 163 ntBASIC4.01□□□□□ -1.77
CLIP3Q96DZ5 RNU6-1060P-201ENST00000384664 107 ntBASIC4.01□□□□□ -1.77
CLIP3Q96DZ5 AL360182.1-201ENST00000397433 468 ntBASIC4.01□□□□□ -1.77
CLIP3Q96DZ5 CCDC126-203ENST00000410069 890 ntAPPRIS P1 TSL 1 (best) BASIC4.01□□□□□ -1.77
CLIP3Q96DZ5 AC068533.1-201ENST00000418542 415 ntBASIC4.01□□□□□ -1.77
CLIP3Q96DZ5 RPL9P9-201ENST00000418824 636 ntTSL 2 BASIC4.01□□□□□ -1.77
CLIP3Q96DZ5 AC093911.1-201ENST00000419129 552 ntTSL 4 BASIC4.01□□□□□ -1.77
CLIP3Q96DZ5 AC138024.1-201ENST00000420867 699 ntTSL 3 BASIC4.01□□□□□ -1.77
CLIP3Q96DZ5 AL139396.1-201ENST00000421137 167 ntBASIC4.01□□□□□ -1.77
CLIP3Q96DZ5 AL451062.2-201ENST00000427515 271 ntBASIC4.01□□□□□ -1.77
CLIP3Q96DZ5 GYPB-201ENST00000429670 239 ntTSL 1 (best) BASIC4.01□□□□□ -1.77
CLIP3Q96DZ5 AL512844.2-201ENST00000433990 593 ntBASIC4.01□□□□□ -1.77
CLIP3Q96DZ5 U8.20-201ENST00000459445 131 ntBASIC4.01□□□□□ -1.77
CLIP3Q96DZ5 RBBP4P6-201ENST00000508098 202 ntBASIC4.01□□□□□ -1.77
CLIP3Q96DZ5 RNU6-685P-201ENST00000517088 95 ntBASIC4.01□□□□□ -1.77
CLIP3Q96DZ5 IFITM8P-201ENST00000522529 394 ntBASIC4.01□□□□□ -1.77
CLIP3Q96DZ5 AP000763.2-201ENST00000540641 163 ntBASIC4.01□□□□□ -1.77
CLIP3Q96DZ5 AL355102.1-201ENST00000555383 460 ntTSL 5 BASIC4.01□□□□□ -1.77
CLIP3Q96DZ5 AC010653.1-201ENST00000571108 881 ntBASIC4.01□□□□□ -1.77
CLIP3Q96DZ5 RN7SL600P-201ENST00000581811 299 ntBASIC4.01□□□□□ -1.77
CLIP3Q96DZ5 AL109918.3-201ENST00000603072 338 ntBASIC4.01□□□□□ -1.77
CLIP3Q96DZ5 ESRRAP2-204ENST00000606337 280 ntTSL 5 BASIC4.01□□□□□ -1.77
CLIP3Q96DZ5 AC002076.2-201ENST00000617362 122 ntBASIC4.01□□□□□ -1.77
CLIP3Q96DZ5 AL162373.1-201ENST00000620433 407 ntBASIC4.01□□□□□ -1.77
CLIP3Q96DZ5 DLX6-AS1_1.1-201ENST00000621599 180 ntBASIC4.01□□□□□ -1.77
CLIP3Q96DZ5 AL669831.3-213ENST00000636676 183 ntBASIC4.01□□□□□ -1.77
CLIP3Q96DZ5 C6orf10-204ENST00000447241 2148 ntAPPRIS P3 TSL 5 BASIC4.01□□□□□ -1.77
CLIP3Q96DZ5 SLC30A6-204ENST00000406369 4589 ntTSL 1 (best) BASIC4.01□□□□□ -1.77
CLIP3Q96DZ5 QSER1-201ENST00000399302 9335 ntAPPRIS P1 TSL 1 (best) BASIC4.01□□□□□ -1.77
CLIP3Q96DZ5 RFX7-201ENST00000559447 10426 ntAPPRIS P5 TSL 5 BASIC4.01□□□□□ -1.77
CLIP3Q96DZ5 HDX-202ENST00000373177 2924 ntAPPRIS P1 TSL 1 (best) BASIC4.01□□□□□ -1.77
CLIP3Q96DZ5 THEMIS-202ENST00000368250 4101 ntAPPRIS P3 TSL 5 BASIC4.01□□□□□ -1.77
CLIP3Q96DZ5 AC008505.1-204ENST00000637363 2714 ntTSL 5 BASIC4.01□□□□□ -1.77
Retrieved 100 of 98,524 protein–RNA pairs in 81.3 ms