Protein–RNA interactions for Protein: Q8NCR9

CLRN3, Clarin-3, humanhuman

Predictions only

Length 226 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN3Q8NCR9 AL118496.2-201ENST00000448300 230 ntBASIC3.61□□□□□ -1.83
CLRN3Q8NCR9 AL356859.1-201ENST00000449180 414 ntTSL 5 BASIC3.61□□□□□ -1.83
CLRN3Q8NCR9 AC144530.1-201ENST00000452862 555 ntBASIC3.61□□□□□ -1.83
CLRN3Q8NCR9 AL139260.1-202ENST00000456813 441 ntTSL 3 BASIC3.61□□□□□ -1.83
CLRN3Q8NCR9 MIR2053-201ENST00000459295 91 ntBASIC3.61□□□□□ -1.83
CLRN3Q8NCR9 MED28P2-201ENST00000475771 317 ntBASIC3.61□□□□□ -1.83
CLRN3Q8NCR9 RN7SL466P-201ENST00000497546 295 ntBASIC3.61□□□□□ -1.83
CLRN3Q8NCR9 ABCA17P-206ENST00000512848 467 ntTSL 2 BASIC3.61□□□□□ -1.83
CLRN3Q8NCR9 AC004980.4-201ENST00000513375 203 ntBASIC3.61□□□□□ -1.83
CLRN3Q8NCR9 RNU6-470P-201ENST00000515954 104 ntBASIC3.61□□□□□ -1.83
CLRN3Q8NCR9 RNA5SP384-201ENST00000516615 116 ntBASIC3.61□□□□□ -1.83
CLRN3Q8NCR9 AC093249.4-201ENST00000564755 259 ntBASIC3.61□□□□□ -1.83
CLRN3Q8NCR9 AC009163.5-201ENST00000575421 637 ntBASIC3.61□□□□□ -1.83
CLRN3Q8NCR9 MTCO3P13-201ENST00000577757 781 ntBASIC3.61□□□□□ -1.83
CLRN3Q8NCR9 MIR1273E-201ENST00000581165 102 ntBASIC3.61□□□□□ -1.83
CLRN3Q8NCR9 AC127024.3-201ENST00000582841 460 ntTSL 3 BASIC3.61□□□□□ -1.83
CLRN3Q8NCR9 ZNF616-202ENST00000596290 568 ntTSL 4 BASIC3.61□□□□□ -1.83
CLRN3Q8NCR9 AC010201.1-201ENST00000605051 540 ntBASIC3.61□□□□□ -1.83
CLRN3Q8NCR9 HOTTIP_3.1-201ENST00000619957 337 ntBASIC3.61□□□□□ -1.83
CLRN3Q8NCR9 AC024581.2-201ENST00000619986 252 ntBASIC3.61□□□□□ -1.83
CLRN3Q8NCR9 uc_338.22-201ENST00000622722 187 ntBASIC3.61□□□□□ -1.83
CLRN3Q8NCR9 C1orf195-202ENST00000625027 441 ntTSL 5 BASIC3.61□□□□□ -1.83
CLRN3Q8NCR9 SNAP23-222ENST00000626061 237 ntTSL 5 BASIC3.61□□□□□ -1.83
CLRN3Q8NCR9 MCMDC2-201ENST00000313616 2043 ntTSL 2 BASIC3.61□□□□□ -1.83
CLRN3Q8NCR9 LMBRD1-201ENST00000370570 2099 ntTSL 1 (best) BASIC3.61□□□□□ -1.83
CLRN3Q8NCR9 ADGRL4-201ENST00000370742 3527 ntAPPRIS P1 TSL 1 (best) BASIC3.61□□□□□ -1.83
CLRN3Q8NCR9 BCLAF3-202ENST00000379682 3217 ntAPPRIS ALT2 TSL 5 BASIC3.61□□□□□ -1.83
CLRN3Q8NCR9 AC007823.1-201ENST00000569932 1566 ntBASIC3.6□□□□□ -1.83
CLRN3Q8NCR9 ARHGAP21-218ENST00000636789 4210 ntTSL 2 BASIC3.6□□□□□ -1.83
CLRN3Q8NCR9 SPINK1-201ENST00000296695 542 ntAPPRIS P1 TSL 1 (best) BASIC3.6□□□□□ -1.83
CLRN3Q8NCR9 RNU6-1115P-201ENST00000362490 106 ntBASIC3.6□□□□□ -1.83
CLRN3Q8NCR9 RNU6-490P-201ENST00000362985 107 ntBASIC3.6□□□□□ -1.83
CLRN3Q8NCR9 BTF3L4P2-201ENST00000392798 346 ntBASIC3.6□□□□□ -1.83
CLRN3Q8NCR9 RNU6-55P-201ENST00000411092 107 ntBASIC3.6□□□□□ -1.83
CLRN3Q8NCR9 FAR2P2-201ENST00000413041 594 ntBASIC3.6□□□□□ -1.83
CLRN3Q8NCR9 AL138760.1-201ENST00000423283 435 ntTSL 3 BASIC3.6□□□□□ -1.83
CLRN3Q8NCR9 ITGA9-AS1-207ENST00000445429 532 ntTSL 5 BASIC3.6□□□□□ -1.83
CLRN3Q8NCR9 AL138900.1-201ENST00000449345 399 ntTSL 3 BASIC3.6□□□□□ -1.83
CLRN3Q8NCR9 AL359715.2-201ENST00000452402 682 ntTSL 2 BASIC3.6□□□□□ -1.83
CLRN3Q8NCR9 HMGN2P13-201ENST00000476476 274 ntBASIC3.6□□□□□ -1.83
CLRN3Q8NCR9 AC025244.2-201ENST00000509215 422 ntTSL 3 BASIC3.6□□□□□ -1.83
CLRN3Q8NCR9 LINC02118-202ENST00000510583 419 ntTSL 3 BASIC3.6□□□□□ -1.83
CLRN3Q8NCR9 BX510359.5-201ENST00000515651 304 ntBASIC3.6□□□□□ -1.83
CLRN3Q8NCR9 SCARNA15.1-201ENST00000516384 125 ntBASIC3.6□□□□□ -1.83
CLRN3Q8NCR9 Y_RNA.711-201ENST00000516993 102 ntBASIC3.6□□□□□ -1.83
CLRN3Q8NCR9 RNU6-711P-201ENST00000517255 106 ntBASIC3.6□□□□□ -1.83
CLRN3Q8NCR9 AC007991.1-201ENST00000522680 631 ntBASIC3.6□□□□□ -1.83
CLRN3Q8NCR9 AC103796.1-201ENST00000530663 358 ntTSL 1 (best) BASIC3.6□□□□□ -1.83
CLRN3Q8NCR9 AC002563.1-201ENST00000535109 451 ntTSL 3 BASIC3.6□□□□□ -1.83
CLRN3Q8NCR9 LINC02095-202ENST00000543512 323 ntTSL 3 BASIC3.6□□□□□ -1.83
CLRN3Q8NCR9 AL390816.1-201ENST00000553990 322 ntTSL 3 BASIC3.6□□□□□ -1.83
CLRN3Q8NCR9 LINC01580-201ENST00000555255 561 ntTSL 4 BASIC3.6□□□□□ -1.83
CLRN3Q8NCR9 AC009292.2-201ENST00000558889 291 ntTSL 5 BASIC3.6□□□□□ -1.83
CLRN3Q8NCR9 AC003687.1-201ENST00000578040 427 ntTSL 3 BASIC3.6□□□□□ -1.83
CLRN3Q8NCR9 MIR3614-201ENST00000581261 86 ntBASIC3.6□□□□□ -1.83
CLRN3Q8NCR9 AC131274.1-201ENST00000582507 254 ntTSL 3 BASIC3.6□□□□□ -1.83
CLRN3Q8NCR9 RNA5SP440-201ENST00000612665 119 ntBASIC3.6□□□□□ -1.83
CLRN3Q8NCR9 HNF1A-AS1-205ENST00000619441 343 ntTSL 3 BASIC3.6□□□□□ -1.83
CLRN3Q8NCR9 SMIM2-AS1-204ENST00000619472 746 ntTSL 3 BASIC3.6□□□□□ -1.83
CLRN3Q8NCR9 LGALS13-204ENST00000621475 494 ntAPPRIS ALT2 TSL 5 BASIC3.6□□□□□ -1.83
CLRN3Q8NCR9 AC090617.7-201ENST00000623952 126 ntBASIC3.6□□□□□ -1.83
CLRN3Q8NCR9 AC008785.1-201ENST00000624475 456 ntBASIC3.6□□□□□ -1.83
CLRN3Q8NCR9 AC244205.2-202ENST00000635781 342 ntBASIC3.6□□□□□ -1.83
CLRN3Q8NCR9 OSBPL8-202ENST00000393249 7047 ntAPPRIS ALT1 TSL 1 (best) BASIC3.6□□□□□ -1.83
CLRN3Q8NCR9 POLK-201ENST00000241436 5911 ntAPPRIS P1 TSL 1 (best) BASIC3.6□□□□□ -1.83
CLRN3Q8NCR9 FAM35A-202ENST00000298786 3614 ntTSL 5 BASIC3.59□□□□□ -1.83
CLRN3Q8NCR9 KRTAP24-1-201ENST00000340345 1650 ntAPPRIS P1 BASIC3.59□□□□□ -1.83
CLRN3Q8NCR9 PJA2-202ENST00000361557 4645 ntAPPRIS P1 TSL 2 BASIC3.59□□□□□ -1.83
CLRN3Q8NCR9 CUL2-209ENST00000537177 4271 ntTSL 5 BASIC3.59□□□□□ -1.83
CLRN3Q8NCR9 Y_RNA.422-201ENST00000384054 114 ntBASIC3.59□□□□□ -1.83
CLRN3Q8NCR9 AP000275.1-201ENST00000411943 390 ntBASIC3.59□□□□□ -1.83
CLRN3Q8NCR9 AC096649.2-201ENST00000416186 393 ntBASIC3.59□□□□□ -1.83
CLRN3Q8NCR9 AL590139.1-201ENST00000416267 400 ntBASIC3.59□□□□□ -1.83
CLRN3Q8NCR9 AL669831.2-201ENST00000422528 456 ntTSL 5 BASIC3.59□□□□□ -1.83
CLRN3Q8NCR9 MTND3P9-201ENST00000429526 346 ntBASIC3.59□□□□□ -1.83
CLRN3Q8NCR9 AL137792.2-201ENST00000443484 235 ntBASIC3.59□□□□□ -1.83
CLRN3Q8NCR9 AL392046.1-203ENST00000450106 651 ntTSL 2 BASIC3.59□□□□□ -1.83
CLRN3Q8NCR9 TTTY23B-202ENST00000451467 512 ntTSL 1 (best) BASIC3.59□□□□□ -1.83
CLRN3Q8NCR9 TTTY23-201ENST00000452889 512 ntTSL 1 (best) BASIC3.59□□□□□ -1.83
CLRN3Q8NCR9 NUTF2P7-201ENST00000453086 375 ntBASIC3.59□□□□□ -1.83
CLRN3Q8NCR9 U3.44-201ENST00000458938 192 ntBASIC3.59□□□□□ -1.83
CLRN3Q8NCR9 AC022493.2-201ENST00000506122 481 ntBASIC3.59□□□□□ -1.83
CLRN3Q8NCR9 AC091976.1-202ENST00000509211 630 ntTSL 3 BASIC3.59□□□□□ -1.83
CLRN3Q8NCR9 HHIP-AS1-203ENST00000512359 646 ntTSL 3 BASIC3.59□□□□□ -1.83
CLRN3Q8NCR9 RNU5F-8P-201ENST00000515941 111 ntBASIC3.59□□□□□ -1.83
CLRN3Q8NCR9 ACA59.2-201ENST00000517061 156 ntBASIC3.59□□□□□ -1.83
CLRN3Q8NCR9 AC111149.1-201ENST00000522560 343 ntTSL 3 BASIC3.59□□□□□ -1.83
CLRN3Q8NCR9 ELOCP31-201ENST00000540463 467 ntBASIC3.59□□□□□ -1.83
CLRN3Q8NCR9 LINC01195-201ENST00000570118 451 ntTSL 3 BASIC3.59□□□□□ -1.83
CLRN3Q8NCR9 AC022432.1-201ENST00000595739 310 ntBASIC3.59□□□□□ -1.83
CLRN3Q8NCR9 AC019159.1-201ENST00000605094 187 ntBASIC3.59□□□□□ -1.83
CLRN3Q8NCR9 MIR4302-201ENST00000638058 60 ntBASIC3.59□□□□□ -1.83
CLRN3Q8NCR9 CDH10-201ENST00000264463 3438 ntAPPRIS P1 TSL 1 (best) BASIC3.59□□□□□ -1.83
CLRN3Q8NCR9 SYTL2-203ENST00000359152 4123 ntAPPRIS ALT1 TSL 1 (best) BASIC3.59□□□□□ -1.83
CLRN3Q8NCR9 RAD17-208ENST00000380774 2117 ntAPPRIS P1 TSL 1 (best) BASIC3.59□□□□□ -1.84
CLRN3Q8NCR9 XRCC4-203ENST00000396027 1530 ntAPPRIS ALT1 TSL 5 BASIC3.59□□□□□ -1.84
CLRN3Q8NCR9 LINC00890-202ENST00000569275 4595 ntAPPRIS P1 TSL 1 (best) BASIC3.59□□□□□ -1.84
CLRN3Q8NCR9 ADAM18-202ENST00000379866 2314 ntAPPRIS ALT2 TSL 1 (best) BASIC3.59□□□□□ -1.84
CLRN3Q8NCR9 OXR1-206ENST00000449762 2621 ntTSL 1 (best) BASIC3.58□□□□□ -1.84
CLRN3Q8NCR9 MBD5-212ENST00000627651 5610 ntTSL 5 BASIC3.58□□□□□ -1.84
Retrieved 100 of 98,524 protein–RNA pairs in 97.8 ms