Protein–RNA interactions for Protein: Q70EK8

USP53, Inactive ubiquitin carboxyl-terminal hydrolase 53, humanhuman

Predictions only

Length 1,073 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP53Q70EK8 RNU2-68P-201ENST00000410878 191 ntBASIC4.12□□□□□ -1.75
USP53Q70EK8 RNU6-325P-201ENST00000411132 105 ntBASIC4.12□□□□□ -1.75
USP53Q70EK8 AC083867.1-201ENST00000413567 457 ntTSL 3 BASIC4.12□□□□□ -1.75
USP53Q70EK8 AC010731.2-201ENST00000415275 440 ntTSL 3 BASIC4.12□□□□□ -1.75
USP53Q70EK8 AC108032.1-201ENST00000416706 207 ntBASIC4.12□□□□□ -1.75
USP53Q70EK8 AL356095.1-201ENST00000417217 199 ntBASIC4.12□□□□□ -1.75
USP53Q70EK8 AC008267.5-201ENST00000424928 265 ntBASIC4.12□□□□□ -1.75
USP53Q70EK8 AL160004.2-201ENST00000432935 350 ntBASIC4.12□□□□□ -1.75
USP53Q70EK8 AC007389.2-201ENST00000434630 306 ntBASIC4.12□□□□□ -1.75
USP53Q70EK8 AC011816.1-201ENST00000441346 546 ntBASIC4.12□□□□□ -1.75
USP53Q70EK8 IGKV3D-7-201ENST00000443397 384 ntAPPRIS P1 BASIC4.12□□□□□ -1.75
USP53Q70EK8 S100A11P1-201ENST00000477525 312 ntBASIC4.12□□□□□ -1.75
USP53Q70EK8 AC139453.3-201ENST00000493276 369 ntBASIC4.12□□□□□ -1.75
USP53Q70EK8 AC146944.2-203ENST00000502493 354 ntBASIC4.12□□□□□ -1.75
USP53Q70EK8 AC139495.1-202ENST00000513164 354 ntBASIC4.12□□□□□ -1.75
USP53Q70EK8 SNORA31.19-201ENST00000517079 126 ntBASIC4.12□□□□□ -1.75
USP53Q70EK8 AC100770.1-201ENST00000532310 322 ntBASIC4.12□□□□□ -1.75
USP53Q70EK8 AL157688.1-201ENST00000555990 369 ntTSL 3 BASIC4.12□□□□□ -1.75
USP53Q70EK8 AC026992.1-202ENST00000558454 421 ntTSL 3 BASIC4.12□□□□□ -1.75
USP53Q70EK8 CPDP1-201ENST00000579660 283 ntBASIC4.12□□□□□ -1.75
USP53Q70EK8 AC053481.4-201ENST00000583164 216 ntBASIC4.12□□□□□ -1.75
USP53Q70EK8 AC008739.3-201ENST00000603262 127 ntBASIC4.12□□□□□ -1.75
USP53Q70EK8 5S_rRNA.16-201ENST00000612928 119 ntBASIC4.12□□□□□ -1.75
USP53Q70EK8 AL138721.1-201ENST00000616756 179 ntBASIC4.12□□□□□ -1.75
USP53Q70EK8 AC011266.1-201ENST00000624119 3569 ntBASIC4.12□□□□□ -1.75
USP53Q70EK8 OR8D1-202ENST00000641015 8286 ntAPPRIS P1 BASIC4.12□□□□□ -1.75
USP53Q70EK8 OR8D1-203ENST00000641897 8285 ntAPPRIS P1 BASIC4.12□□□□□ -1.75
USP53Q70EK8 C5orf63-205ENST00000535381 5680 ntTSL 3 BASIC4.12□□□□□ -1.75
USP53Q70EK8 BCAP29-203ENST00000379119 5773 ntTSL 3 BASIC4.12□□□□□ -1.75
USP53Q70EK8 DGKI-204ENST00000453654 12928 ntAPPRIS ALT2 TSL 1 (best) BASIC4.12□□□□□ -1.75
USP53Q70EK8 CSRNP3-201ENST00000314499 11788 ntAPPRIS P1 TSL 5 BASIC4.12□□□□□ -1.75
USP53Q70EK8 ZNF594-201ENST00000399604 4862 ntAPPRIS P1 BASIC4.12□□□□□ -1.75
USP53Q70EK8 ATP8B4-201ENST00000284509 5676 ntAPPRIS P1 TSL 5 BASIC4.12□□□□□ -1.75
USP53Q70EK8 DAZ4-206ENST00000449750 3271 ntTSL 5 BASIC4.12□□□□□ -1.75
USP53Q70EK8 ABI3BP-206ENST00000471714 6783 ntAPPRIS ALT2 TSL 5 BASIC4.11□□□□□ -1.75
USP53Q70EK8 NFAT5-203ENST00000393742 13067 ntAPPRIS ALT1 TSL 1 (best) BASIC4.11□□□□□ -1.75
USP53Q70EK8 RNU1-108P-201ENST00000362556 161 ntBASIC4.11□□□□□ -1.75
USP53Q70EK8 RNU6-37P-201ENST00000362692 107 ntBASIC4.11□□□□□ -1.75
USP53Q70EK8 RNA5SP387-201ENST00000364226 106 ntBASIC4.11□□□□□ -1.75
USP53Q70EK8 RNU6-11P-201ENST00000364234 107 ntBASIC4.11□□□□□ -1.75
USP53Q70EK8 RNA5SP130-201ENST00000364431 114 ntBASIC4.11□□□□□ -1.75
USP53Q70EK8 RNU6-7-201ENST00000364784 107 ntBASIC4.11□□□□□ -1.75
USP53Q70EK8 RNU1-115P-201ENST00000365329 160 ntBASIC4.11□□□□□ -1.75
USP53Q70EK8 RNU6-8-201ENST00000365467 107 ntBASIC4.11□□□□□ -1.75
USP53Q70EK8 C1orf100-202ENST00000366537 483 ntTSL 1 (best) BASIC4.11□□□□□ -1.75
USP53Q70EK8 RNU6-25P-201ENST00000383873 107 ntBASIC4.11□□□□□ -1.75
USP53Q70EK8 RNU6-1-201ENST00000383898 107 ntBASIC4.11□□□□□ -1.75
USP53Q70EK8 RNU6-48P-201ENST00000384161 107 ntBASIC4.11□□□□□ -1.75
USP53Q70EK8 RNU6-36P-201ENST00000384172 107 ntBASIC4.11□□□□□ -1.75
USP53Q70EK8 RNU6-4P-201ENST00000384205 107 ntBASIC4.11□□□□□ -1.75
USP53Q70EK8 RNU6-5P-201ENST00000384238 107 ntBASIC4.11□□□□□ -1.75
USP53Q70EK8 RNU6-3P-201ENST00000384314 107 ntBASIC4.11□□□□□ -1.75
USP53Q70EK8 RNU6-16P-201ENST00000384385 107 ntBASIC4.11□□□□□ -1.75
USP53Q70EK8 RNU6-15P-201ENST00000384534 107 ntBASIC4.11□□□□□ -1.75
USP53Q70EK8 RNU6-2-201ENST00000384627 107 ntBASIC4.11□□□□□ -1.75
USP53Q70EK8 RNU6-29P-201ENST00000384637 107 ntBASIC4.11□□□□□ -1.75
USP53Q70EK8 RNU6-9-201ENST00000384776 107 ntBASIC4.11□□□□□ -1.75
USP53Q70EK8 RNU6-33P-201ENST00000384793 107 ntBASIC4.11□□□□□ -1.75
USP53Q70EK8 AL356057.3-201ENST00000402607 340 ntBASIC4.11□□□□□ -1.75
USP53Q70EK8 MORN2-203ENST00000409131 544 ntTSL 5 BASIC4.11□□□□□ -1.75
USP53Q70EK8 RNU6-985P-201ENST00000410182 104 ntBASIC4.11□□□□□ -1.75
USP53Q70EK8 RNU6-174P-201ENST00000410406 106 ntBASIC4.11□□□□□ -1.75
USP53Q70EK8 SNORD56-201ENST00000413522 71 ntBASIC4.11□□□□□ -1.75
USP53Q70EK8 AC092047.1-201ENST00000424997 240 ntBASIC4.11□□□□□ -1.75
USP53Q70EK8 AC092813.2-201ENST00000434540 399 ntTSL 3 BASIC4.11□□□□□ -1.75
USP53Q70EK8 AC112715.1-201ENST00000445534 350 ntTSL 3 BASIC4.11□□□□□ -1.75
USP53Q70EK8 RPL23AP81-201ENST00000455252 467 ntBASIC4.11□□□□□ -1.75
USP53Q70EK8 AC008571.1-201ENST00000467232 300 ntBASIC4.11□□□□□ -1.75
USP53Q70EK8 LINC02377-201ENST00000500169 450 ntTSL 3 BASIC4.11□□□□□ -1.75
USP53Q70EK8 AC099522.1-202ENST00000514718 367 ntBASIC4.11□□□□□ -1.75
USP53Q70EK8 RNA5SP73-201ENST00000516744 108 ntBASIC4.11□□□□□ -1.75
USP53Q70EK8 AP004242.1-201ENST00000533701 349 ntBASIC4.11□□□□□ -1.75
USP53Q70EK8 PRH1-206ENST00000543626 710 ntAPPRIS P2 TSL 5 BASIC4.11□□□□□ -1.75
USP53Q70EK8 UTS2-201ENST00000054668 420 ntAPPRIS P4 TSL 1 (best) BASIC4.11□□□□□ -1.75
USP53Q70EK8 AC069029.1-201ENST00000558736 263 ntTSL 2 BASIC4.11□□□□□ -1.75
USP53Q70EK8 HSPE1P5-201ENST00000561489 272 ntBASIC4.11□□□□□ -1.75
USP53Q70EK8 MIR3690-201ENST00000580266 75 ntBASIC4.11□□□□□ -1.75
USP53Q70EK8 AC007952.9-201ENST00000584365 191 ntTSL 3 BASIC4.11□□□□□ -1.75
USP53Q70EK8 AC093227.3-202ENST00000586606 704 ntAPPRIS P5 TSL 3 BASIC4.11□□□□□ -1.75
USP53Q70EK8 LUZP6-201ENST00000589735 177 ntAPPRIS P1 BASIC4.11□□□□□ -1.75
USP53Q70EK8 AC004805.2-201ENST00000605382 482 ntBASIC4.11□□□□□ -1.75
USP53Q70EK8 AL121917.1-203ENST00000605534 577 ntBASIC4.11□□□□□ -1.75
USP53Q70EK8 RNU6-6P-201ENST00000606623 107 ntBASIC4.11□□□□□ -1.75
USP53Q70EK8 AC006157.1-201ENST00000611750 366 ntBASIC4.11□□□□□ -1.75
USP53Q70EK8 FAM27D1-201ENST00000612308 341 ntBASIC4.11□□□□□ -1.75
USP53Q70EK8 LINC02246-205ENST00000627623 417 ntTSL 5 BASIC4.11□□□□□ -1.75
USP53Q70EK8 ZNF807-201ENST00000328088 1707 ntBASIC4.11□□□□□ -1.75
USP53Q70EK8 LBR-202ENST00000338179 3812 ntAPPRIS P1 TSL 5 BASIC4.11□□□□□ -1.75
USP53Q70EK8 SEMA3D-201ENST00000284136 6265 ntAPPRIS P1 TSL 5 BASIC4.1□□□□□ -1.75
USP53Q70EK8 SLC25A17-202ENST00000402844 2405 ntTSL 2 BASIC4.1□□□□□ -1.75
USP53Q70EK8 Y_RNA.428-201ENST00000384078 102 ntBASIC4.1□□□□□ -1.75
USP53Q70EK8 RNU6-790P-201ENST00000384479 105 ntBASIC4.1□□□□□ -1.75
USP53Q70EK8 MIR10A-201ENST00000385043 110 ntBASIC4.1□□□□□ -1.75
USP53Q70EK8 MIR493-201ENST00000385254 89 ntBASIC4.1□□□□□ -1.75
USP53Q70EK8 RNU6-1106P-201ENST00000390845 107 ntBASIC4.1□□□□□ -1.75
USP53Q70EK8 RNU6-1197P-201ENST00000391183 107 ntBASIC4.1□□□□□ -1.75
USP53Q70EK8 AC096664.2-201ENST00000411843 406 ntBASIC4.1□□□□□ -1.75
USP53Q70EK8 LINC01344-201ENST00000420760 261 ntTSL 3 BASIC4.1□□□□□ -1.75
USP53Q70EK8 PGBD4P6-201ENST00000421501 610 ntBASIC4.1□□□□□ -1.75
USP53Q70EK8 AL356010.2-201ENST00000422844 197 ntTSL 3 BASIC4.1□□□□□ -1.75
Retrieved 100 of 98,524 protein–RNA pairs in 169.6 ms