Protein–RNA interactions for Protein: Q68DE3

USF3, Basic helix-loop-helix domain-containing protein USF3, humanhuman

Predictions only

Length 2,245 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF3Q68DE3 SNHG27-202ENST00000507933 491 ntTSL 2 BASIC0.64□□□□□ -2.31
USF3Q68DE3 AC034223.1-201ENST00000511054 599 ntTSL 3 BASIC0.64□□□□□ -2.31
USF3Q68DE3 RNU6-27P-201ENST00000516146 107 ntBASIC0.64□□□□□ -2.31
USF3Q68DE3 AP005230.1-201ENST00000585072 675 ntTSL 5 BASIC0.64□□□□□ -2.31
USF3Q68DE3 AC092070.1-201ENST00000600257 359 ntTSL 3 BASIC0.64□□□□□ -2.31
USF3Q68DE3 AL031775.1-201ENST00000607014 887 ntBASIC0.64□□□□□ -2.31
USF3Q68DE3 AL773524.1-201ENST00000614065 229 ntBASIC0.64□□□□□ -2.31
USF3Q68DE3 MIR6866-201ENST00000638146 69 ntBASIC0.64□□□□□ -2.31
USF3Q68DE3 RNU6-492P-201ENST00000363035 104 ntBASIC0.63□□□□□ -2.31
USF3Q68DE3 RNU4-78P-201ENST00000410940 126 ntBASIC0.63□□□□□ -2.31
USF3Q68DE3 UBE2Q2P5Y-201ENST00000413867 207 ntBASIC0.63□□□□□ -2.31
USF3Q68DE3 UBE2Q2P4Y-201ENST00000433767 207 ntBASIC0.63□□□□□ -2.31
USF3Q68DE3 AL392003.1-201ENST00000434394 243 ntBASIC0.63□□□□□ -2.31
USF3Q68DE3 FGF7P5-201ENST00000441829 291 ntBASIC0.63□□□□□ -2.31
USF3Q68DE3 AC079776.3-201ENST00000450665 370 ntBASIC0.63□□□□□ -2.31
USF3Q68DE3 AC114982.2-201ENST00000461396 358 ntBASIC0.63□□□□□ -2.31
USF3Q68DE3 RPS27P23-201ENST00000487608 251 ntBASIC0.63□□□□□ -2.31
USF3Q68DE3 AF213884.2-201ENST00000510417 903 ntBASIC0.63□□□□□ -2.31
USF3Q68DE3 AC008834.1-201ENST00000511612 175 ntBASIC0.63□□□□□ -2.31
USF3Q68DE3 RNU5A-7P-201ENST00000515979 116 ntBASIC0.63□□□□□ -2.31
USF3Q68DE3 LY96-202ENST00000518893 430 ntTSL 3 BASIC0.63□□□□□ -2.31
USF3Q68DE3 AC008676.3-201ENST00000521237 435 ntBASIC0.63□□□□□ -2.31
USF3Q68DE3 AC104316.1-201ENST00000521258 625 ntTSL 3 BASIC0.63□□□□□ -2.31
USF3Q68DE3 AC074029.2-201ENST00000551045 634 ntBASIC0.63□□□□□ -2.31
USF3Q68DE3 LINC02253-201ENST00000559321 448 ntTSL 2 BASIC0.63□□□□□ -2.31
USF3Q68DE3 AC011260.1-201ENST00000578420 472 ntBASIC0.63□□□□□ -2.31
USF3Q68DE3 AC005154.1-222ENST00000579024 341 ntTSL 5 BASIC0.63□□□□□ -2.31
USF3Q68DE3 AC009229.3-201ENST00000608056 282 ntBASIC0.63□□□□□ -2.31
USF3Q68DE3 AC011604.2-202ENST00000540229 2451 ntAPPRIS P5 TSL 2 BASIC0.63□□□□□ -2.31
USF3Q68DE3 RBBP8P1-201ENST00000449447 1844 ntBASIC0.63□□□□□ -2.31
USF3Q68DE3 MTND5P9-201ENST00000503854 1755 ntBASIC0.63□□□□□ -2.31
USF3Q68DE3 ZNF365-203ENST00000395249 433 ntTSL 1 (best) BASIC0.62□□□□□ -2.31
USF3Q68DE3 AL161935.1-201ENST00000420945 421 ntTSL 3 BASIC0.62□□□□□ -2.31
USF3Q68DE3 AL669831.2-201ENST00000422528 456 ntTSL 5 BASIC0.62□□□□□ -2.31
USF3Q68DE3 AC018630.2-202ENST00000422992 927 ntBASIC0.62□□□□□ -2.31
USF3Q68DE3 EIF4EP4-201ENST00000424916 578 ntBASIC0.62□□□□□ -2.31
USF3Q68DE3 TAAR7P-201ENST00000436141 242 ntBASIC0.62□□□□□ -2.31
USF3Q68DE3 AL591848.2-201ENST00000442712 522 ntTSL 3 BASIC0.62□□□□□ -2.31
USF3Q68DE3 RPL31P60-201ENST00000478450 367 ntBASIC0.62□□□□□ -2.31
USF3Q68DE3 KATNBL1P4-201ENST00000503545 918 ntBASIC0.62□□□□□ -2.31
USF3Q68DE3 SNORD19.2-201ENST00000516978 73 ntBASIC0.62□□□□□ -2.31
USF3Q68DE3 CD44-AS1-201ENST00000528869 587 ntTSL 4 BASIC0.62□□□□□ -2.31
USF3Q68DE3 AL133279.1-202ENST00000556789 456 ntTSL 5 BASIC0.62□□□□□ -2.31
USF3Q68DE3 AC087465.1-201ENST00000560574 245 ntBASIC0.62□□□□□ -2.31
USF3Q68DE3 AC099842.1-201ENST00000619919 596 ntBASIC0.62□□□□□ -2.31
USF3Q68DE3 LIPJ-201ENST00000371939 1484 ntAPPRIS P1 TSL 1 (best) BASIC0.62□□□□□ -2.31
USF3Q68DE3 RMDN2-203ENST00000402091 1973 ntTSL 2 BASIC0.62□□□□□ -2.31
USF3Q68DE3 MDM2-205ENST00000348801 798 ntTSL 1 (best) BASIC0.62□□□□□ -2.31
USF3Q68DE3 SNORA22-201ENST00000383907 134 ntBASIC0.62□□□□□ -2.31
USF3Q68DE3 RNU6-1226P-201ENST00000384317 107 ntBASIC0.62□□□□□ -2.31
USF3Q68DE3 SNORA22C-201ENST00000384614 134 ntBASIC0.62□□□□□ -2.31
USF3Q68DE3 U8.14-201ENST00000390843 143 ntBASIC0.62□□□□□ -2.31
USF3Q68DE3 RNU6ATAC31P-201ENST00000408513 126 ntBASIC0.62□□□□□ -2.31
USF3Q68DE3 SFR1P2-201ENST00000421841 730 ntBASIC0.62□□□□□ -2.31
USF3Q68DE3 AL033539.1-201ENST00000427775 743 ntTSL 3 BASIC0.62□□□□□ -2.31
USF3Q68DE3 GNGT1-203ENST00000429473 538 ntAPPRIS P1 TSL 1 (best) BASIC0.62□□□□□ -2.31
USF3Q68DE3 AL135923.2-201ENST00000435444 501 ntTSL 2 BASIC0.62□□□□□ -2.31
USF3Q68DE3 AC104164.3-201ENST00000467363 1258 ntBASIC0.62□□□□□ -2.31
USF3Q68DE3 AC008883.2-201ENST00000505796 414 ntTSL 3 BASIC0.62□□□□□ -2.31
USF3Q68DE3 CBX3P3-201ENST00000508108 532 ntBASIC0.62□□□□□ -2.31
USF3Q68DE3 RNU6-362P-201ENST00000516736 90 ntBASIC0.62□□□□□ -2.31
USF3Q68DE3 AC023158.1-201ENST00000561632 1025 ntBASIC0.62□□□□□ -2.31
USF3Q68DE3 AP001269.3-201ENST00000588718 329 ntBASIC0.62□□□□□ -2.31
USF3Q68DE3 AL669831.4-202ENST00000590817 238 ntBASIC0.62□□□□□ -2.31
USF3Q68DE3 AC040174.2-201ENST00000602701 465 ntBASIC0.62□□□□□ -2.31
USF3Q68DE3 AC016925.2-201ENST00000605108 242 ntBASIC0.62□□□□□ -2.31
USF3Q68DE3 SCOC-AS1-203ENST00000609616 405 ntTSL 3 BASIC0.62□□□□□ -2.31
USF3Q68DE3 AL109933.3-201ENST00000619095 188 ntBASIC0.62□□□□□ -2.31
USF3Q68DE3 SATB1-AS1-237ENST00000626982 735 ntTSL 5 BASIC0.62□□□□□ -2.31
USF3Q68DE3 AP000776.1-201ENST00000530032 1663 ntBASIC0.62□□□□□ -2.31
USF3Q68DE3 GPR22-201ENST00000304402 2942 ntAPPRIS P1 TSL 1 (best) BASIC0.61□□□□□ -2.31
USF3Q68DE3 ZNF702P-202ENST00000434269 1966 ntBASIC0.61□□□□□ -2.31
USF3Q68DE3 SNORD51-201ENST00000384320 80 ntBASIC0.61□□□□□ -2.31
USF3Q68DE3 FCF1P2-201ENST00000415284 583 ntBASIC0.61□□□□□ -2.31
USF3Q68DE3 AL158823.1-201ENST00000418441 478 ntBASIC0.61□□□□□ -2.31
USF3Q68DE3 RPL30P13-201ENST00000418873 348 ntBASIC0.61□□□□□ -2.31
USF3Q68DE3 AL390879.2-204ENST00000438602 582 ntTSL 3 BASIC0.61□□□□□ -2.31
USF3Q68DE3 NAA50-206ENST00000493454 964 ntTSL 2 BASIC0.61□□□□□ -2.31
USF3Q68DE3 RPS27AP10-201ENST00000496103 208 ntBASIC0.61□□□□□ -2.31
USF3Q68DE3 SMAD1-AS2-201ENST00000508936 1090 ntTSL 1 (best) BASIC0.61□□□□□ -2.31
USF3Q68DE3 AC112178.1-201ENST00000511165 676 ntTSL 3 BASIC0.61□□□□□ -2.31
USF3Q68DE3 RNU6-1095P-201ENST00000516148 108 ntBASIC0.61□□□□□ -2.31
USF3Q68DE3 AC036111.3-201ENST00000526389 112 ntBASIC0.61□□□□□ -2.31
USF3Q68DE3 AC012378.1-201ENST00000561155 364 ntTSL 3 BASIC0.61□□□□□ -2.31
USF3Q68DE3 AC090888.1-201ENST00000561335 1141 ntBASIC0.61□□□□□ -2.31
USF3Q68DE3 MIR4299-201ENST00000577899 72 ntBASIC0.61□□□□□ -2.31
USF3Q68DE3 AC105224.1-201ENST00000587055 421 ntBASIC0.61□□□□□ -2.31
USF3Q68DE3 AC025588.3-201ENST00000604182 274 ntBASIC0.61□□□□□ -2.31
USF3Q68DE3 AL450336.1-201ENST00000605180 586 ntBASIC0.61□□□□□ -2.31
USF3Q68DE3 AL121759.2-201ENST00000636173 570 ntTSL 4 BASIC0.61□□□□□ -2.31
USF3Q68DE3 PCF11-AS1-201ENST00000602322 1516 ntBASIC0.61□□□□□ -2.31
USF3Q68DE3 RNU6-989P-201ENST00000362756 107 ntBASIC0.61□□□□□ -2.31
USF3Q68DE3 MIR146A-201ENST00000385201 99 ntBASIC0.61□□□□□ -2.31
USF3Q68DE3 AC244453.4-201ENST00000419150 388 ntBASIC0.61□□□□□ -2.31
USF3Q68DE3 AC246680.2-201ENST00000422106 389 ntBASIC0.61□□□□□ -2.31
USF3Q68DE3 AC244035.1-201ENST00000430042 390 ntBASIC0.61□□□□□ -2.31
USF3Q68DE3 GTF2IP20-201ENST00000431663 360 ntBASIC0.61□□□□□ -2.31
USF3Q68DE3 ZNF736P11Y-201ENST00000442535 1213 ntBASIC0.61□□□□□ -2.31
USF3Q68DE3 AL589880.1-201ENST00000448271 287 ntBASIC0.61□□□□□ -2.31
USF3Q68DE3 PLCB1-IT1-202ENST00000451443 251 ntTSL 3 BASIC0.61□□□□□ -2.31
Retrieved 100 of 98,524 protein–RNA pairs in 112 ms