Protein–RNA interactions for Protein: Q5THJ4

VPS13D, Vacuolar protein sorting-associated protein 13D, humanhuman

Predictions only

Length 4,388 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13DQ5THJ4 LINC02309-201ENST00000553679 207 ntTSL 3 BASIC0.26□□□□□ -2.37
VPS13DQ5THJ4 MIR5087-201ENST00000635826 76 ntBASIC0.26□□□□□ -2.37
VPS13DQ5THJ4 MIR100-201ENST00000385259 80 ntBASIC0.26□□□□□ -2.37
VPS13DQ5THJ4 PIGFP2-201ENST00000421400 651 ntBASIC0.26□□□□□ -2.37
VPS13DQ5THJ4 AC013410.2-201ENST00000422627 201 ntBASIC0.26□□□□□ -2.37
VPS13DQ5THJ4 RPS25P9-201ENST00000435591 252 ntBASIC0.26□□□□□ -2.37
VPS13DQ5THJ4 ITGA9-AS1-208ENST00000449586 726 ntTSL 3 BASIC0.26□□□□□ -2.37
VPS13DQ5THJ4 AC091435.1-201ENST00000505442 584 ntBASIC0.26□□□□□ -2.37
VPS13DQ5THJ4 AC136628.3-201ENST00000521868 290 ntBASIC0.26□□□□□ -2.37
VPS13DQ5THJ4 AC004217.2-201ENST00000547401 751 ntTSL 3 BASIC0.26□□□□□ -2.37
VPS13DQ5THJ4 FAM106CP-201ENST00000582212 507 ntBASIC0.26□□□□□ -2.37
VPS13DQ5THJ4 AC126177.8-201ENST00000618339 1015 ntBASIC0.26□□□□□ -2.37
VPS13DQ5THJ4 AC099842.1-201ENST00000619919 596 ntBASIC0.26□□□□□ -2.37
VPS13DQ5THJ4 HOXA11-AS1_6.1-201ENST00000620092 179 ntBASIC0.26□□□□□ -2.37
VPS13DQ5THJ4 CR848007.1-201ENST00000442354 1699 ntBASIC0.26□□□□□ -2.37
VPS13DQ5THJ4 MIR30A-201ENST00000385092 71 ntBASIC0.25□□□□□ -2.37
VPS13DQ5THJ4 MRPL35P1-201ENST00000404272 572 ntBASIC0.25□□□□□ -2.37
VPS13DQ5THJ4 ARPC3P5-201ENST00000448802 534 ntBASIC0.25□□□□□ -2.37
VPS13DQ5THJ4 AC087477.1-201ENST00000465747 340 ntBASIC0.25□□□□□ -2.37
VPS13DQ5THJ4 AC025857.1-201ENST00000525252 377 ntBASIC0.25□□□□□ -2.37
VPS13DQ5THJ4 AC132825.8-201ENST00000640783 297 ntBASIC0.25□□□□□ -2.37
VPS13DQ5THJ4 AL513475.1-201ENST00000406602 315 ntBASIC0.25□□□□□ -2.37
VPS13DQ5THJ4 RSL24D1P8-201ENST00000434442 492 ntBASIC0.25□□□□□ -2.37
VPS13DQ5THJ4 AL080284.1-201ENST00000434493 442 ntTSL 2 BASIC0.25□□□□□ -2.37
VPS13DQ5THJ4 AC073614.1-201ENST00000438690 650 ntBASIC0.25□□□□□ -2.37
VPS13DQ5THJ4 TRAPPC2P8-201ENST00000440676 396 ntBASIC0.25□□□□□ -2.37
VPS13DQ5THJ4 AL358794.1-201ENST00000445689 381 ntBASIC0.25□□□□□ -2.37
VPS13DQ5THJ4 AC108935.1-201ENST00000504874 518 ntTSL 2 BASIC0.25□□□□□ -2.37
VPS13DQ5THJ4 AC009135.1-201ENST00000549303 776 ntTSL 2 BASIC0.25□□□□□ -2.37
VPS13DQ5THJ4 AC090371.2-202ENST00000582239 644 ntTSL 5 BASIC0.25□□□□□ -2.37
VPS13DQ5THJ4 MTND4P16-201ENST00000466108 1367 ntBASIC0.25□□□□□ -2.37
VPS13DQ5THJ4 AL117342.1-201ENST00000404861 406 ntBASIC0.25□□□□□ -2.37
VPS13DQ5THJ4 AL365184.1-201ENST00000413801 572 ntTSL 3 BASIC0.25□□□□□ -2.37
VPS13DQ5THJ4 SFR1P2-201ENST00000421841 730 ntBASIC0.25□□□□□ -2.37
VPS13DQ5THJ4 AC100871.2-201ENST00000522005 327 ntTSL 3 BASIC0.25□□□□□ -2.37
VPS13DQ5THJ4 RERG-IT1-201ENST00000539734 301 ntTSL 3 BASIC0.25□□□□□ -2.37
VPS13DQ5THJ4 AC146944.4-201ENST00000602697 718 ntBASIC0.25□□□□□ -2.37
VPS13DQ5THJ4 SNORA63.3-201ENST00000362682 132 ntBASIC0.24□□□□□ -2.37
VPS13DQ5THJ4 AC023141.4-201ENST00000412031 328 ntBASIC0.24□□□□□ -2.37
VPS13DQ5THJ4 AL161651.1-201ENST00000440882 223 ntBASIC0.24□□□□□ -2.37
VPS13DQ5THJ4 TMEM247-203ENST00000449601 741 ntTSL 1 (best) BASIC0.24□□□□□ -2.37
VPS13DQ5THJ4 HMGB1P38-201ENST00000490557 577 ntBASIC0.24□□□□□ -2.37
VPS13DQ5THJ4 CYCTP-201ENST00000504253 315 ntBASIC0.24□□□□□ -2.37
VPS13DQ5THJ4 AC079140.2-201ENST00000506193 142 ntBASIC0.24□□□□□ -2.37
VPS13DQ5THJ4 AC113192.4-201ENST00000534666 547 ntTSL 4 BASIC0.24□□□□□ -2.37
VPS13DQ5THJ4 AC099850.3-201ENST00000577678 321 ntTSL 3 BASIC0.24□□□□□ -2.37
VPS13DQ5THJ4 RNU6-349P-201ENST00000362402 107 ntBASIC0.24□□□□□ -2.37
VPS13DQ5THJ4 AC025566.1-201ENST00000477153 490 ntTSL 3 BASIC0.24□□□□□ -2.37
VPS13DQ5THJ4 CBX3P3-201ENST00000508108 532 ntBASIC0.24□□□□□ -2.37
VPS13DQ5THJ4 SNORA31.13-201ENST00000516624 135 ntBASIC0.24□□□□□ -2.37
VPS13DQ5THJ4 CD44-AS1-201ENST00000528869 587 ntTSL 4 BASIC0.24□□□□□ -2.37
VPS13DQ5THJ4 HMGB1P14-201ENST00000557424 591 ntBASIC0.24□□□□□ -2.37
VPS13DQ5THJ4 ZNF732-202ENST00000619749 2179 ntAPPRIS ALT2 TSL 2 BASIC0.24□□□□□ -2.37
VPS13DQ5THJ4 RNU6ATAC11P-201ENST00000408541 125 ntBASIC0.24□□□□□ -2.37
VPS13DQ5THJ4 TOMM22P2-201ENST00000430735 237 ntBASIC0.24□□□□□ -2.37
VPS13DQ5THJ4 AC067940.1-201ENST00000458411 300 ntBASIC0.24□□□□□ -2.37
VPS13DQ5THJ4 AC021736.1-201ENST00000521143 563 ntTSL 4 BASIC0.24□□□□□ -2.37
VPS13DQ5THJ4 AC007347.1-201ENST00000563879 281 ntTSL 3 BASIC0.24□□□□□ -2.37
VPS13DQ5THJ4 RNA5SP252-201ENST00000391131 119 ntBASIC0.24□□□□□ -2.37
VPS13DQ5THJ4 RN7SKP158-201ENST00000410453 326 ntBASIC0.24□□□□□ -2.37
VPS13DQ5THJ4 AC010420.1-201ENST00000515077 509 ntTSL 3 BASIC0.24□□□□□ -2.37
VPS13DQ5THJ4 AL356585.4-201ENST00000623078 1229 ntBASIC0.24□□□□□ -2.37
VPS13DQ5THJ4 LRIF1-203ENST00000494675 1912 ntAPPRIS ALT2 TSL 2 BASIC0.24□□□□□ -2.37
VPS13DQ5THJ4 CCDC68-201ENST00000337363 1457 ntAPPRIS P1 TSL 2 BASIC0.23□□□□□ -2.37
VPS13DQ5THJ4 RNU1-58P-201ENST00000362413 163 ntBASIC0.23□□□□□ -2.37
VPS13DQ5THJ4 SNORA29-201ENST00000384183 140 ntBASIC0.23□□□□□ -2.37
VPS13DQ5THJ4 AC073325.1-201ENST00000443714 542 ntTSL 4 BASIC0.23□□□□□ -2.37
VPS13DQ5THJ4 RNU6-362P-201ENST00000516736 90 ntBASIC0.23□□□□□ -2.37
VPS13DQ5THJ4 ELOCP5-201ENST00000604924 333 ntBASIC0.23□□□□□ -2.37
VPS13DQ5THJ4 Y_RNA.48-201ENST00000362710 103 ntBASIC0.23□□□□□ -2.37
VPS13DQ5THJ4 HTN3-201ENST00000381057 493 ntAPPRIS ALT2 TSL 2 BASIC0.23□□□□□ -2.37
VPS13DQ5THJ4 Y_RNA.390-201ENST00000383932 102 ntBASIC0.23□□□□□ -2.37
VPS13DQ5THJ4 RNA5SP25-201ENST00000410815 110 ntBASIC0.23□□□□□ -2.37
VPS13DQ5THJ4 AL162254.1-202ENST00000419604 497 ntTSL 5 BASIC0.23□□□□□ -2.37
VPS13DQ5THJ4 COX6CP3-201ENST00000580869 223 ntBASIC0.23□□□□□ -2.37
VPS13DQ5THJ4 BNIP3P16-201ENST00000589779 534 ntBASIC0.23□□□□□ -2.37
VPS13DQ5THJ4 AKAP14-203ENST00000371425 793 ntAPPRIS ALT2 TSL 5 BASIC0.23□□□□□ -2.37
VPS13DQ5THJ4 RNU6ATAC2P-201ENST00000387943 126 ntBASIC0.23□□□□□ -2.37
VPS13DQ5THJ4 AC012312.1-201ENST00000503710 527 ntTSL 2 BASIC0.23□□□□□ -2.37
VPS13DQ5THJ4 RNU6-1073P-201ENST00000517182 106 ntBASIC0.23□□□□□ -2.37
VPS13DQ5THJ4 RNU2-19P-201ENST00000517288 84 ntBASIC0.23□□□□□ -2.37
VPS13DQ5THJ4 AC022690.1-201ENST00000526681 550 ntBASIC0.23□□□□□ -2.37
VPS13DQ5THJ4 FRG1HP-204ENST00000617940 757 ntBASIC0.23□□□□□ -2.37
VPS13DQ5THJ4 AC006461.1-201ENST00000412637 326 ntBASIC0.22□□□□□ -2.37
VPS13DQ5THJ4 AL606490.4-201ENST00000423117 127 ntBASIC0.22□□□□□ -2.37
VPS13DQ5THJ4 TMEM167AP1-201ENST00000423409 219 ntBASIC0.22□□□□□ -2.37
VPS13DQ5THJ4 AC245047.4-201ENST00000433189 144 ntBASIC0.22□□□□□ -2.37
VPS13DQ5THJ4 SNORD124-201ENST00000459577 104 ntBASIC0.22□□□□□ -2.37
VPS13DQ5THJ4 AC095059.1-201ENST00000502570 349 ntTSL 5 BASIC0.22□□□□□ -2.37
VPS13DQ5THJ4 MTCYBP16-201ENST00000509187 1129 ntBASIC0.22□□□□□ -2.37
VPS13DQ5THJ4 AP001021.1-201ENST00000577704 244 ntTSL 3 BASIC0.22□□□□□ -2.37
VPS13DQ5THJ4 RPS3AP24-201ENST00000407896 734 ntBASIC0.22□□□□□ -2.37
VPS13DQ5THJ4 TCEAL3-AS1-201ENST00000424887 361 ntTSL 5 BASIC0.22□□□□□ -2.37
VPS13DQ5THJ4 RPL31P20-201ENST00000449593 360 ntBASIC0.22□□□□□ -2.37
VPS13DQ5THJ4 RNU6-1155P-201ENST00000363554 107 ntBASIC0.22□□□□□ -2.37
VPS13DQ5THJ4 RNU1-36P-201ENST00000365130 165 ntBASIC0.22□□□□□ -2.37
VPS13DQ5THJ4 AC099513.1-201ENST00000490423 301 ntBASIC0.22□□□□□ -2.37
VPS13DQ5THJ4 AC110751.1-201ENST00000511916 462 ntTSL 3 BASIC0.22□□□□□ -2.37
VPS13DQ5THJ4 RNU6-758P-201ENST00000516292 89 ntBASIC0.22□□□□□ -2.37
VPS13DQ5THJ4 AC090739.1-201ENST00000522190 708 ntTSL 3 BASIC0.22□□□□□ -2.37
Retrieved 100 of 98,524 protein–RNA pairs in 117.6 ms