Protein–RNA interactions for Protein: Q02388

COL7A1, Collagen alpha-1(VII) chain, humanhuman

Predictions only

Length 2,944 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1Q02388 AC074051.3-201ENST00000570238 358 ntBASIC0.41□□□□□ -2.34
COL7A1Q02388 AL355802.3-201ENST00000607571 545 ntBASIC0.41□□□□□ -2.34
COL7A1Q02388 AC007792.1-201ENST00000623023 402 ntBASIC0.41□□□□□ -2.34
COL7A1Q02388 AC012361.1-201ENST00000447260 1498 ntTSL 1 (best) BASIC0.4□□□□□ -2.34
COL7A1Q02388 MTND5P14-201ENST00000441481 1267 ntBASIC0.4□□□□□ -2.35
COL7A1Q02388 AC055731.1-201ENST00000474387 401 ntBASIC0.4□□□□□ -2.35
COL7A1Q02388 LINC01487-202ENST00000490497 423 ntTSL 3 BASIC0.4□□□□□ -2.35
COL7A1Q02388 AC108935.1-201ENST00000504874 518 ntTSL 2 BASIC0.4□□□□□ -2.35
COL7A1Q02388 AC026719.1-201ENST00000506059 456 ntTSL 3 BASIC0.4□□□□□ -2.35
COL7A1Q02388 FAM206BP-201ENST00000510179 541 ntBASIC0.4□□□□□ -2.35
COL7A1Q02388 RNU6-943P-201ENST00000516960 98 ntBASIC0.4□□□□□ -2.35
COL7A1Q02388 MIR3117-201ENST00000584034 78 ntBASIC0.4□□□□□ -2.35
COL7A1Q02388 AL355812.1-201ENST00000603215 216 ntBASIC0.4□□□□□ -2.35
COL7A1Q02388 AC025594.3-201ENST00000613068 790 ntBASIC0.4□□□□□ -2.35
COL7A1Q02388 MIR6718-201ENST00000616153 80 ntBASIC0.4□□□□□ -2.35
COL7A1Q02388 AC116563.2-201ENST00000624751 535 ntBASIC0.4□□□□□ -2.35
COL7A1Q02388 UGP2-231ENST00000627474 264 ntTSL 5 BASIC0.4□□□□□ -2.35
COL7A1Q02388 AC096656.1-201ENST00000623826 1364 ntBASIC0.4□□□□□ -2.35
COL7A1Q02388 LINC02070-201ENST00000460586 1321 ntTSL 1 (best) BASIC0.4□□□□□ -2.35
COL7A1Q02388 RNU4-73P-201ENST00000363164 141 ntBASIC0.4□□□□□ -2.35
COL7A1Q02388 MIR493-201ENST00000385254 89 ntBASIC0.4□□□□□ -2.35
COL7A1Q02388 AC097717.1-233ENST00000413557 460 ntTSL 3 BASIC0.4□□□□□ -2.35
COL7A1Q02388 AL591043.1-201ENST00000432461 424 ntBASIC0.4□□□□□ -2.35
COL7A1Q02388 OR6C72P-201ENST00000451403 892 ntBASIC0.4□□□□□ -2.35
COL7A1Q02388 AC114501.3-201ENST00000453648 164 ntTSL 5 BASIC0.4□□□□□ -2.35
COL7A1Q02388 AC078857.1-201ENST00000469870 667 ntBASIC0.4□□□□□ -2.35
COL7A1Q02388 HMGB1P38-201ENST00000490557 577 ntBASIC0.4□□□□□ -2.35
COL7A1Q02388 RPL30P5-201ENST00000494923 336 ntBASIC0.4□□□□□ -2.35
COL7A1Q02388 RNU6-1073P-201ENST00000517182 106 ntBASIC0.4□□□□□ -2.35
COL7A1Q02388 AP002884.4-201ENST00000527589 594 ntTSL 3 BASIC0.4□□□□□ -2.35
COL7A1Q02388 AC004217.2-201ENST00000547401 751 ntTSL 3 BASIC0.4□□□□□ -2.35
COL7A1Q02388 AL162311.1-201ENST00000553046 601 ntTSL 3 BASIC0.4□□□□□ -2.35
COL7A1Q02388 AC007038.2-201ENST00000608095 740 ntBASIC0.4□□□□□ -2.35
COL7A1Q02388 MIR7515-201ENST00000637837 67 ntBASIC0.4□□□□□ -2.35
COL7A1Q02388 MIR101-1-201ENST00000362265 75 ntBASIC0.39□□□□□ -2.35
COL7A1Q02388 U8.14-201ENST00000390843 143 ntBASIC0.39□□□□□ -2.35
COL7A1Q02388 LINC02095-201ENST00000430908 346 ntTSL 2 BASIC0.39□□□□□ -2.35
COL7A1Q02388 AL035415.1-201ENST00000447150 289 ntTSL 5 BASIC0.39□□□□□ -2.35
COL7A1Q02388 AC021146.2-201ENST00000504736 556 ntBASIC0.39□□□□□ -2.35
COL7A1Q02388 Y_RNA.659-201ENST00000515994 113 ntBASIC0.39□□□□□ -2.35
COL7A1Q02388 RSL24D1P11-201ENST00000591045 491 ntBASIC0.39□□□□□ -2.35
COL7A1Q02388 AC068880.5-201ENST00000624331 290 ntBASIC0.39□□□□□ -2.35
COL7A1Q02388 ZNF382-210ENST00000639288 834 ntTSL 5 BASIC0.39□□□□□ -2.35
COL7A1Q02388 AL442644.1-201ENST00000454390 3105 ntBASIC0.39□□□□□ -2.35
COL7A1Q02388 AC087359.1-201ENST00000508335 1740 ntBASIC0.39□□□□□ -2.35
COL7A1Q02388 AP000776.1-201ENST00000530032 1663 ntBASIC0.39□□□□□ -2.35
COL7A1Q02388 RNA5SP205-201ENST00000364653 136 ntBASIC0.39□□□□□ -2.35
COL7A1Q02388 MIR767-201ENST00000390228 109 ntBASIC0.39□□□□□ -2.35
COL7A1Q02388 RNU6-920P-201ENST00000410926 92 ntBASIC0.39□□□□□ -2.35
COL7A1Q02388 AL596247.1-201ENST00000416076 442 ntTSL 3 BASIC0.39□□□□□ -2.35
COL7A1Q02388 TMEM167AP1-201ENST00000423409 219 ntBASIC0.39□□□□□ -2.35
COL7A1Q02388 ENOX1-AS2-201ENST00000434273 609 ntTSL 3 BASIC0.39□□□□□ -2.35
COL7A1Q02388 AL354824.2-201ENST00000458004 446 ntTSL 3 BASIC0.39□□□□□ -2.35
COL7A1Q02388 CFAP44-AS1-202ENST00000498480 686 ntTSL 3 BASIC0.39□□□□□ -2.35
COL7A1Q02388 AC114912.1-201ENST00000503394 546 ntTSL 3 BASIC0.39□□□□□ -2.35
COL7A1Q02388 AC022690.1-201ENST00000526681 550 ntBASIC0.39□□□□□ -2.35
COL7A1Q02388 AC078880.1-201ENST00000546696 553 ntTSL 4 BASIC0.39□□□□□ -2.35
COL7A1Q02388 SATB1-AS1-258ENST00000629405 664 ntTSL 5 BASIC0.39□□□□□ -2.35
COL7A1Q02388 AL050331.3-201ENST00000448740 2081 ntTSL 2 BASIC0.39□□□□□ -2.35
COL7A1Q02388 RNU1-105P-201ENST00000363470 161 ntBASIC0.38□□□□□ -2.35
COL7A1Q02388 RNU6-1164P-201ENST00000364428 107 ntBASIC0.38□□□□□ -2.35
COL7A1Q02388 MIR146A-201ENST00000385201 99 ntBASIC0.38□□□□□ -2.35
COL7A1Q02388 AL513475.1-201ENST00000406602 315 ntBASIC0.38□□□□□ -2.35
COL7A1Q02388 AC002456.1-203ENST00000412669 449 ntTSL 3 BASIC0.38□□□□□ -2.35
COL7A1Q02388 VPS26BP1-201ENST00000417155 755 ntBASIC0.38□□□□□ -2.35
COL7A1Q02388 RPL39P28-201ENST00000465655 155 ntBASIC0.38□□□□□ -2.35
COL7A1Q02388 AC091826.2-201ENST00000504034 412 ntTSL 3 BASIC0.38□□□□□ -2.35
COL7A1Q02388 RNU2-19P-201ENST00000517288 84 ntBASIC0.38□□□□□ -2.35
COL7A1Q02388 AC105036.1-201ENST00000566222 271 ntBASIC0.38□□□□□ -2.35
COL7A1Q02388 AC097717.1-249ENST00000608040 401 ntTSL 5 BASIC0.38□□□□□ -2.35
COL7A1Q02388 SCOC-AS1-203ENST00000609616 405 ntTSL 3 BASIC0.38□□□□□ -2.35
COL7A1Q02388 MIR198-201ENST00000637333 62 ntBASIC0.38□□□□□ -2.35
COL7A1Q02388 AL022578.1-201ENST00000439330 1433 ntBASIC0.38□□□□□ -2.35
COL7A1Q02388 MINPP1-204ENST00000536010 2215 ntTSL 1 (best) BASIC0.38□□□□□ -2.35
COL7A1Q02388 HTN3-201ENST00000381057 493 ntAPPRIS ALT2 TSL 2 BASIC0.38□□□□□ -2.35
COL7A1Q02388 MTND5P15-201ENST00000434246 349 ntBASIC0.38□□□□□ -2.35
COL7A1Q02388 CABYRP1-201ENST00000465493 1045 ntBASIC0.38□□□□□ -2.35
COL7A1Q02388 PDCD10-214ENST00000487947 716 ntTSL 5 BASIC0.38□□□□□ -2.35
COL7A1Q02388 LINC02364-201ENST00000514802 687 ntTSL 2 BASIC0.38□□□□□ -2.35
COL7A1Q02388 AC097535.1-201ENST00000515263 332 ntTSL 3 BASIC0.38□□□□□ -2.35
COL7A1Q02388 AC025423.2-201ENST00000537570 439 ntBASIC0.38□□□□□ -2.35
COL7A1Q02388 AL512791.1-201ENST00000555853 300 ntTSL 3 BASIC0.38□□□□□ -2.35
COL7A1Q02388 AC135507.1-201ENST00000607214 561 ntBASIC0.38□□□□□ -2.35
COL7A1Q02388 AC243829.3-201ENST00000622177 108 ntBASIC0.38□□□□□ -2.35
COL7A1Q02388 GTPBP8-205ENST00000473129 1518 ntTSL 2 BASIC0.38□□□□□ -2.35
COL7A1Q02388 SNORD114-3-201ENST00000364969 75 ntBASIC0.37□□□□□ -2.35
COL7A1Q02388 RNU6-452P-201ENST00000384406 107 ntBASIC0.37□□□□□ -2.35
COL7A1Q02388 MIR515-2-201ENST00000384883 83 ntBASIC0.37□□□□□ -2.35
COL7A1Q02388 MIR515-1-201ENST00000384884 83 ntBASIC0.37□□□□□ -2.35
COL7A1Q02388 MT-TP-201ENST00000387461 68 ntBASIC0.37□□□□□ -2.35
COL7A1Q02388 AL356776.1-201ENST00000406574 447 ntBASIC0.37□□□□□ -2.35
COL7A1Q02388 RNU6-733P-201ENST00000410759 104 ntBASIC0.37□□□□□ -2.35
COL7A1Q02388 RPL31P20-201ENST00000449593 360 ntBASIC0.37□□□□□ -2.35
COL7A1Q02388 NCOR1P1-202ENST00000486162 291 ntBASIC0.37□□□□□ -2.35
COL7A1Q02388 RPL30P11-201ENST00000495304 339 ntBASIC0.37□□□□□ -2.35
COL7A1Q02388 AC109927.2-201ENST00000506416 303 ntBASIC0.37□□□□□ -2.35
COL7A1Q02388 C5orf46-203ENST00000515291 573 ntAPPRIS ALT1 TSL 1 (best) BASIC0.37□□□□□ -2.35
COL7A1Q02388 AP003355.1-201ENST00000518956 587 ntBASIC0.37□□□□□ -2.35
COL7A1Q02388 AC009509.2-201ENST00000538640 429 ntTSL 2 BASIC0.37□□□□□ -2.35
COL7A1Q02388 LINC02301-201ENST00000553760 773 ntTSL 3 BASIC0.37□□□□□ -2.35
Retrieved 100 of 98,524 protein–RNA pairs in 104.2 ms