Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 CYB5AP5-201ENST00000549779 389 ntBASIC1□□□□□ -2.25
FOXA3P55318 ST20-203ENST00000562759 694 ntAPPRIS P1 TSL 2 BASIC1□□□□□ -2.25
FOXA3P55318 AP001496.1-201ENST00000579113 471 ntTSL 4 BASIC1□□□□□ -2.25
FOXA3P55318 LINC01897-203ENST00000591503 369 ntTSL 2 BASIC1□□□□□ -2.25
FOXA3P55318 AL161896.1-201ENST00000597248 508 ntTSL 4 BASIC1□□□□□ -2.25
FOXA3P55318 LINC01206-214ENST00000610910 456 ntTSL 5 BASIC1□□□□□ -2.25
FOXA3P55318 AC091834.1-201ENST00000614543 472 ntBASIC1□□□□□ -2.25
FOXA3P55318 AL109620.1-201ENST00000618738 1197 ntBASIC1□□□□□ -2.25
FOXA3P55318 AC002550.2-201ENST00000621246 394 ntBASIC1□□□□□ -2.25
FOXA3P55318 AC073052.2-202ENST00000622296 775 ntTSL 5 BASIC1□□□□□ -2.25
FOXA3P55318 AC079416.3-201ENST00000624479 549 ntBASIC1□□□□□ -2.25
FOXA3P55318 ZGRF1-203ENST00000445203 6529 ntAPPRIS P1 TSL 5 BASIC1□□□□□ -2.25
FOXA3P55318 AC025539.1-201ENST00000515343 4019 ntTSL 2 BASIC0.99□□□□□ -2.25
FOXA3P55318 LRRC69-201ENST00000343709 720 ntTSL 2 BASIC0.99□□□□□ -2.25
FOXA3P55318 MIR26B-201ENST00000362251 77 ntBASIC0.99□□□□□ -2.25
FOXA3P55318 RNU5E-1-201ENST00000362477 120 ntBASIC0.99□□□□□ -2.25
FOXA3P55318 TRAJ50-201ENST00000390487 60 ntAPPRIS P1 BASIC0.99□□□□□ -2.25
FOXA3P55318 TRAJ23-201ENST00000390514 63 ntAPPRIS P1 BASIC0.99□□□□□ -2.25
FOXA3P55318 ZNF736P10Y-201ENST00000403990 1110 ntBASIC0.99□□□□□ -2.25
FOXA3P55318 AC010731.2-201ENST00000415275 440 ntTSL 3 BASIC0.99□□□□□ -2.25
FOXA3P55318 AC133106.1-201ENST00000419029 397 ntTSL 3 BASIC0.99□□□□□ -2.25
FOXA3P55318 ELOCP14-201ENST00000428070 331 ntBASIC0.99□□□□□ -2.25
FOXA3P55318 UBE2V2P3-201ENST00000433562 437 ntBASIC0.99□□□□□ -2.25
FOXA3P55318 AL353706.1-201ENST00000436728 494 ntBASIC0.99□□□□□ -2.25
FOXA3P55318 ELOCP7-201ENST00000439968 331 ntBASIC0.99□□□□□ -2.25
FOXA3P55318 RPS29P29-201ENST00000456396 171 ntBASIC0.99□□□□□ -2.25
FOXA3P55318 FCF1P6-201ENST00000456841 595 ntBASIC0.99□□□□□ -2.25
FOXA3P55318 ANKRD20A9P-201ENST00000457997 2978 ntBASIC0.99□□□□□ -2.25
FOXA3P55318 AC006512.1-201ENST00000468816 291 ntBASIC0.99□□□□□ -2.25
FOXA3P55318 RPL31P58-201ENST00000469001 379 ntBASIC0.99□□□□□ -2.25
FOXA3P55318 AC092902.1-201ENST00000486999 259 ntBASIC0.99□□□□□ -2.25
FOXA3P55318 AC117460.1-201ENST00000508964 467 ntTSL 3 BASIC0.99□□□□□ -2.25
FOXA3P55318 AC010460.2-201ENST00000509054 677 ntBASIC0.99□□□□□ -2.25
FOXA3P55318 TET2-AS1-201ENST00000515414 537 ntTSL 5 BASIC0.99□□□□□ -2.25
FOXA3P55318 LINC01216-201ENST00000515728 824 ntTSL 5 BASIC0.99□□□□□ -2.25
FOXA3P55318 AC087439.1-201ENST00000517920 398 ntTSL 3 BASIC0.99□□□□□ -2.25
FOXA3P55318 AC079917.1-201ENST00000527828 584 ntTSL 3 BASIC0.99□□□□□ -2.25
FOXA3P55318 AP004247.1-201ENST00000531556 1289 ntBASIC0.99□□□□□ -2.25
FOXA3P55318 AL133330.2-201ENST00000532760 776 ntTSL 2 BASIC0.99□□□□□ -2.25
FOXA3P55318 AP003781.1-201ENST00000543403 404 ntTSL 3 BASIC0.99□□□□□ -2.25
FOXA3P55318 AC079598.5-201ENST00000547460 117 ntBASIC0.99□□□□□ -2.25
FOXA3P55318 AL359238.1-201ENST00000557770 744 ntTSL 3 BASIC0.99□□□□□ -2.25
FOXA3P55318 AC104229.1-201ENST00000561364 255 ntBASIC0.99□□□□□ -2.25
FOXA3P55318 MIR4422-201ENST00000581938 83 ntBASIC0.99□□□□□ -2.25
FOXA3P55318 AL713866.2-201ENST00000603579 219 ntBASIC0.99□□□□□ -2.25
FOXA3P55318 AP001485.1-201ENST00000604799 199 ntBASIC0.99□□□□□ -2.25
FOXA3P55318 AC116312.1-201ENST00000606841 314 ntBASIC0.99□□□□□ -2.25
FOXA3P55318 AL050343.2-201ENST00000607338 280 ntBASIC0.99□□□□□ -2.25
FOXA3P55318 AL118556.2-201ENST00000614375 824 ntBASIC0.99□□□□□ -2.25
FOXA3P55318 AC021755.4-201ENST00000616620 456 ntBASIC0.99□□□□□ -2.25
FOXA3P55318 AL138713.1-201ENST00000624026 2130 ntBASIC0.99□□□□□ -2.25
FOXA3P55318 ZNF72P-201ENST00000425869 1908 ntBASIC0.98□□□□□ -2.25
FOXA3P55318 Y_RNA.67-201ENST00000362870 100 ntBASIC0.98□□□□□ -2.25
FOXA3P55318 RNU6-203P-201ENST00000384038 104 ntBASIC0.98□□□□□ -2.25
FOXA3P55318 SNORD65C-201ENST00000390962 71 ntBASIC0.98□□□□□ -2.25
FOXA3P55318 SNORA67.6-201ENST00000391093 99 ntBASIC0.98□□□□□ -2.25
FOXA3P55318 RPL17P50-201ENST00000396131 546 ntBASIC0.98□□□□□ -2.25
FOXA3P55318 AL591034.2-201ENST00000402839 359 ntBASIC0.98□□□□□ -2.25
FOXA3P55318 AC127391.1-201ENST00000411737 98 ntBASIC0.98□□□□□ -2.25
FOXA3P55318 AC104777.3-201ENST00000416350 545 ntTSL 3 BASIC0.98□□□□□ -2.25
FOXA3P55318 FO680682.1-201ENST00000421261 345 ntTSL 3 BASIC0.98□□□□□ -2.25
FOXA3P55318 AL590623.1-201ENST00000427864 105 ntBASIC0.98□□□□□ -2.25
FOXA3P55318 MTND4LP7-201ENST00000431728 294 ntBASIC0.98□□□□□ -2.25
FOXA3P55318 AL157937.1-201ENST00000435092 443 ntTSL 3 BASIC0.98□□□□□ -2.25
FOXA3P55318 AC234064.1-201ENST00000436312 247 ntBASIC0.98□□□□□ -2.25
FOXA3P55318 HMGB1P31-201ENST00000437242 427 ntBASIC0.98□□□□□ -2.25
FOXA3P55318 AL354941.1-201ENST00000438600 464 ntBASIC0.98□□□□□ -2.25
FOXA3P55318 TRAPPC2P8-201ENST00000440676 396 ntBASIC0.98□□□□□ -2.25
FOXA3P55318 TRAPPC2P3-201ENST00000443200 321 ntBASIC0.98□□□□□ -2.25
FOXA3P55318 AC079448.1-201ENST00000449377 373 ntBASIC0.98□□□□□ -2.25
FOXA3P55318 TMEM247-203ENST00000449601 741 ntTSL 1 (best) BASIC0.98□□□□□ -2.25
FOXA3P55318 BX322784.1-201ENST00000455793 1077 ntBASIC0.98□□□□□ -2.25
FOXA3P55318 AC013267.1-201ENST00000458227 267 ntBASIC0.98□□□□□ -2.25
FOXA3P55318 LINC01198-202ENST00000458282 558 ntTSL 5 BASIC0.98□□□□□ -2.25
FOXA3P55318 TOPORSLP1-202ENST00000469756 969 ntTSL 3 BASIC0.98□□□□□ -2.25
FOXA3P55318 LINC01612-201ENST00000504509 469 ntTSL 3 BASIC0.98□□□□□ -2.25
FOXA3P55318 AC091917.2-201ENST00000505002 744 ntBASIC0.98□□□□□ -2.25
FOXA3P55318 AC091860.1-201ENST00000505723 432 ntBASIC0.98□□□□□ -2.25
FOXA3P55318 RNU1-41P-201ENST00000516161 162 ntBASIC0.98□□□□□ -2.25
FOXA3P55318 RNU1-48P-201ENST00000516400 162 ntBASIC0.98□□□□□ -2.25
FOXA3P55318 AC090821.2-201ENST00000523552 176 ntBASIC0.98□□□□□ -2.25
FOXA3P55318 AP003033.1-201ENST00000527244 415 ntBASIC0.98□□□□□ -2.25
FOXA3P55318 AL035078.2-201ENST00000533832 326 ntTSL 3 BASIC0.98□□□□□ -2.25
FOXA3P55318 AC136188.1-201ENST00000546770 342 ntTSL 3 BASIC0.98□□□□□ -2.25
FOXA3P55318 AL121821.2-201ENST00000556081 394 ntBASIC0.98□□□□□ -2.25
FOXA3P55318 AL136298.1-201ENST00000557371 566 ntTSL 3 BASIC0.98□□□□□ -2.25
FOXA3P55318 AC009754.1-201ENST00000566282 540 ntTSL 4 BASIC0.98□□□□□ -2.25
FOXA3P55318 AC090615.1-201ENST00000577519 154 ntBASIC0.98□□□□□ -2.25
FOXA3P55318 SNORD53B-201ENST00000577887 78 ntBASIC0.98□□□□□ -2.25
FOXA3P55318 AC021549.1-201ENST00000580937 433 ntTSL 3 BASIC0.98□□□□□ -2.25
FOXA3P55318 AC011494.1-201ENST00000596454 237 ntBASIC0.98□□□□□ -2.25
FOXA3P55318 AL670379.6-201ENST00000603753 252 ntBASIC0.98□□□□□ -2.25
FOXA3P55318 AL670379.11-201ENST00000604059 253 ntBASIC0.98□□□□□ -2.25
FOXA3P55318 AL670379.10-201ENST00000604330 253 ntBASIC0.98□□□□□ -2.25
FOXA3P55318 AC008162.1-201ENST00000604718 254 ntBASIC0.98□□□□□ -2.25
FOXA3P55318 AL670379.1-201ENST00000604752 252 ntBASIC0.98□□□□□ -2.25
FOXA3P55318 AL670379.2-201ENST00000604983 252 ntBASIC0.98□□□□□ -2.25
FOXA3P55318 AL670379.5-201ENST00000605253 252 ntBASIC0.98□□□□□ -2.25
FOXA3P55318 AL670379.4-201ENST00000605279 254 ntBASIC0.98□□□□□ -2.25
FOXA3P55318 AL670379.12-201ENST00000605291 253 ntBASIC0.98□□□□□ -2.25
Retrieved 100 of 98,524 protein–RNA pairs in 102.3 ms