Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 AC002486.1-201ENST00000435098 391 ntBASIC2.67□□□□□ -1.98
HOXD4P09016 MTATP6P13-201ENST00000438531 667 ntBASIC2.67□□□□□ -1.98
HOXD4P09016 RPS15AP9-201ENST00000439856 381 ntBASIC2.67□□□□□ -1.98
HOXD4P09016 ACBD3-AS1-201ENST00000440540 535 ntTSL 5 BASIC2.67□□□□□ -1.98
HOXD4P09016 RPS12P18-201ENST00000442381 270 ntBASIC2.67□□□□□ -1.98
HOXD4P09016 MTCO3P45-201ENST00000443036 613 ntBASIC2.67□□□□□ -1.98
HOXD4P09016 AC234781.5-202ENST00000453508 426 ntTSL 3 BASIC2.67□□□□□ -1.98
HOXD4P09016 AC011998.3-201ENST00000457053 254 ntTSL 3 BASIC2.67□□□□□ -1.98
HOXD4P09016 AL390961.3-201ENST00000458171 485 ntTSL 5 BASIC2.67□□□□□ -1.98
HOXD4P09016 AC008481.1-201ENST00000463278 396 ntBASIC2.67□□□□□ -1.98
HOXD4P09016 RPS27AP9-201ENST00000477681 438 ntBASIC2.67□□□□□ -1.98
HOXD4P09016 ANKRD36B-207ENST00000497329 649 ntTSL 1 (best) BASIC2.67□□□□□ -1.98
HOXD4P09016 AC010280.1-201ENST00000515199 340 ntTSL 2 BASIC2.67□□□□□ -1.98
HOXD4P09016 SCARNA24.1-201ENST00000516465 137 ntBASIC2.67□□□□□ -1.98
HOXD4P09016 RNU6-826P-201ENST00000516827 104 ntBASIC2.67□□□□□ -1.98
HOXD4P09016 SNORA31.22-201ENST00000517204 135 ntBASIC2.67□□□□□ -1.98
HOXD4P09016 MGST1-215ENST00000540056 546 ntTSL 3 BASIC2.67□□□□□ -1.98
HOXD4P09016 ARL2BPP2-201ENST00000550907 489 ntBASIC2.67□□□□□ -1.98
HOXD4P09016 FOPNL-205ENST00000573429 646 ntTSL 3 BASIC2.67□□□□□ -1.98
HOXD4P09016 AP001094.1-201ENST00000579805 193 ntBASIC2.67□□□□□ -1.98
HOXD4P09016 AC015908.4-201ENST00000582334 575 ntTSL 4 BASIC2.67□□□□□ -1.98
HOXD4P09016 AC105224.1-201ENST00000587055 421 ntBASIC2.67□□□□□ -1.98
HOXD4P09016 AC098848.1-201ENST00000588466 567 ntTSL 4 BASIC2.67□□□□□ -1.98
HOXD4P09016 AC007001.1-201ENST00000590912 670 ntTSL 5 BASIC2.67□□□□□ -1.98
HOXD4P09016 ZNF788-206ENST00000596883 692 ntTSL 3 BASIC2.67□□□□□ -1.98
HOXD4P09016 AC068944.2-201ENST00000610373 403 ntBASIC2.67□□□□□ -1.98
HOXD4P09016 U6atac.1-201ENST00000616025 117 ntBASIC2.67□□□□□ -1.98
HOXD4P09016 WFDC11-203ENST00000618797 561 ntAPPRIS P1 TSL 5 BASIC2.67□□□□□ -1.98
HOXD4P09016 DDX10P1-201ENST00000448545 1933 ntBASIC2.67□□□□□ -1.98
HOXD4P09016 AL355596.1-201ENST00000565399 3996 ntBASIC2.67□□□□□ -1.98
HOXD4P09016 VBP1-204ENST00000625964 1547 ntTSL 5 BASIC2.67□□□□□ -1.98
HOXD4P09016 MACC1-202ENST00000400331 9159 ntAPPRIS P1 TSL 2 BASIC2.67□□□□□ -1.98
HOXD4P09016 SKIL-203ENST00000426052 2757 ntTSL 2 BASIC2.66□□□□□ -1.98
HOXD4P09016 LRRC69-201ENST00000343709 720 ntTSL 2 BASIC2.66□□□□□ -1.98
HOXD4P09016 RNU6-223P-201ENST00000362830 107 ntBASIC2.66□□□□□ -1.98
HOXD4P09016 VTRNA1-1-201ENST00000363120 99 ntBASIC2.66□□□□□ -1.98
HOXD4P09016 SNORA23-201ENST00000365128 182 ntBASIC2.66□□□□□ -1.98
HOXD4P09016 SNORA9.2-201ENST00000365361 133 ntBASIC2.66□□□□□ -1.98
HOXD4P09016 RNU1-39P-201ENST00000383897 165 ntBASIC2.66□□□□□ -1.98
HOXD4P09016 Y_RNA.409-201ENST00000383990 98 ntBASIC2.66□□□□□ -1.98
HOXD4P09016 RNU6-76P-201ENST00000384060 104 ntBASIC2.66□□□□□ -1.98
HOXD4P09016 RNU6-456P-201ENST00000384493 107 ntBASIC2.66□□□□□ -1.98
HOXD4P09016 MIR181A1-201ENST00000385026 110 ntBASIC2.66□□□□□ -1.98
HOXD4P09016 FGFR1OP2P1-201ENST00000395943 500 ntBASIC2.66□□□□□ -1.98
HOXD4P09016 RNA5SP492-201ENST00000411330 114 ntBASIC2.66□□□□□ -1.98
HOXD4P09016 AC003985.1-201ENST00000414127 362 ntTSL 3 BASIC2.66□□□□□ -1.98
HOXD4P09016 AL355388.1-201ENST00000415726 401 ntTSL 2 BASIC2.66□□□□□ -1.98
HOXD4P09016 AL645937.1-202ENST00000421799 937 ntBASIC2.66□□□□□ -1.98
HOXD4P09016 AL445123.1-201ENST00000422023 446 ntTSL 2 BASIC2.66□□□□□ -1.98
HOXD4P09016 ISCA1P1-201ENST00000426679 387 ntBASIC2.66□□□□□ -1.98
HOXD4P09016 UBE2V1P8-201ENST00000437166 265 ntBASIC2.66□□□□□ -1.98
HOXD4P09016 KRTAP19-11P-201ENST00000439851 104 ntBASIC2.66□□□□□ -1.98
HOXD4P09016 RPL26P6-201ENST00000440913 438 ntBASIC2.66□□□□□ -1.98
HOXD4P09016 AL135938.1-201ENST00000443141 297 ntBASIC2.66□□□□□ -1.98
HOXD4P09016 AC018643.1-201ENST00000445459 414 ntTSL 5 BASIC2.66□□□□□ -1.98
HOXD4P09016 AC007879.3-202ENST00000448786 823 ntTSL 1 (best) BASIC2.66□□□□□ -1.98
HOXD4P09016 AC013267.1-201ENST00000458227 267 ntBASIC2.66□□□□□ -1.98
HOXD4P09016 AC008571.1-201ENST00000467232 300 ntBASIC2.66□□□□□ -1.98
HOXD4P09016 AC117440.1-201ENST00000474107 571 ntBASIC2.66□□□□□ -1.98
HOXD4P09016 RPS29P26-201ENST00000477483 171 ntBASIC2.66□□□□□ -1.98
HOXD4P09016 AC010273.2-201ENST00000479830 438 ntTSL 5 BASIC2.66□□□□□ -1.98
HOXD4P09016 AC023194.1-201ENST00000493084 308 ntBASIC2.66□□□□□ -1.98
HOXD4P09016 AC010486.1-201ENST00000511793 424 ntBASIC2.66□□□□□ -1.98
HOXD4P09016 AP001893.2-201ENST00000526949 202 ntBASIC2.66□□□□□ -1.98
HOXD4P09016 AC087318.1-201ENST00000536786 389 ntTSL 3 BASIC2.66□□□□□ -1.98
HOXD4P09016 ZNF519P2-201ENST00000557032 169 ntBASIC2.66□□□□□ -1.98
HOXD4P09016 AC005909.1-201ENST00000577835 755 ntTSL 3 BASIC2.66□□□□□ -1.98
HOXD4P09016 AC135178.3-204ENST00000585181 451 ntTSL 2 BASIC2.66□□□□□ -1.98
HOXD4P09016 AC009271.1-202ENST00000588803 492 ntTSL 3 BASIC2.66□□□□□ -1.98
HOXD4P09016 GLUD1P4-201ENST00000590914 418 ntBASIC2.66□□□□□ -1.98
HOXD4P09016 MIR663AHG-231ENST00000609044 590 ntTSL 5 BASIC2.66□□□□□ -1.98
HOXD4P09016 AC107294.1-201ENST00000609524 467 ntBASIC2.66□□□□□ -1.98
HOXD4P09016 AC090517.2-201ENST00000614966 680 ntBASIC2.66□□□□□ -1.98
HOXD4P09016 GPR171-203ENST00000617554 960 ntAPPRIS P1 BASIC2.66□□□□□ -1.98
HOXD4P09016 AC244517.5-202ENST00000623741 500 ntTSL 3 BASIC2.66□□□□□ -1.98
HOXD4P09016 AP003122.6-201ENST00000623831 495 ntBASIC2.66□□□□□ -1.98
HOXD4P09016 SRP54-214ENST00000630962 162 ntTSL 5 BASIC2.66□□□□□ -1.98
HOXD4P09016 AC233263.6-201ENST00000631132 1963 ntBASIC2.66□□□□□ -1.98
HOXD4P09016 CRISP3-204ENST00000433368 2205 ntAPPRIS ALT2 TSL 5 BASIC2.66□□□□□ -1.98
HOXD4P09016 FNBP1L-203ENST00000370253 3889 ntAPPRIS ALT1 TSL 5 BASIC2.66□□□□□ -1.98
HOXD4P09016 ANKRD36BP1-202ENST00000604892 1417 ntBASIC2.66□□□□□ -1.98
HOXD4P09016 MCMDC2-201ENST00000313616 2043 ntTSL 2 BASIC2.66□□□□□ -1.98
HOXD4P09016 TOPORSLP1-203ENST00000493279 2871 ntTSL 4 BASIC2.66□□□□□ -1.98
HOXD4P09016 OR4K2-204ENST00000641885 8681 ntAPPRIS P1 BASIC2.65□□□□□ -1.98
HOXD4P09016 PLSCR5-201ENST00000443512 1969 ntAPPRIS P1 TSL 1 (best) BASIC2.65□□□□□ -1.98
HOXD4P09016 OR52E2-201ENST00000321522 978 ntAPPRIS P1 BASIC2.65□□□□□ -1.99
HOXD4P09016 Y_RNA.22-201ENST00000362492 102 ntBASIC2.65□□□□□ -1.99
HOXD4P09016 AKAP14-203ENST00000371425 793 ntAPPRIS ALT2 TSL 5 BASIC2.65□□□□□ -1.99
HOXD4P09016 RNA5SP184-201ENST00000411071 108 ntBASIC2.65□□□□□ -1.99
HOXD4P09016 AL359195.1-201ENST00000416657 339 ntTSL 3 BASIC2.65□□□□□ -1.99
HOXD4P09016 AL136369.2-201ENST00000420825 537 ntTSL 3 BASIC2.65□□□□□ -1.99
HOXD4P09016 AL139413.1-201ENST00000421309 217 ntBASIC2.65□□□□□ -1.99
HOXD4P09016 AL353193.1-201ENST00000421444 268 ntBASIC2.65□□□□□ -1.99
HOXD4P09016 HSPE1P1-201ENST00000421494 318 ntBASIC2.65□□□□□ -1.99
HOXD4P09016 LINC02095-201ENST00000430908 346 ntTSL 2 BASIC2.65□□□□□ -1.99
HOXD4P09016 GPR143P-201ENST00000434155 205 ntBASIC2.65□□□□□ -1.99
HOXD4P09016 RPL36AP6-201ENST00000435770 321 ntBASIC2.65□□□□□ -1.99
HOXD4P09016 AC105272.1-201ENST00000438604 198 ntBASIC2.65□□□□□ -1.99
HOXD4P09016 RPS24P13-201ENST00000442520 397 ntBASIC2.65□□□□□ -1.99
HOXD4P09016 AC034195.1-202ENST00000451031 610 ntTSL 3 BASIC2.65□□□□□ -1.99
Retrieved 100 of 98,524 protein–RNA pairs in 129.1 ms