Protein–RNA interactions for Protein: O43248

HOXC11, Homeobox protein Hox-C11, humanhuman

Predicted RBP Predictions only

Length 304 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC11O43248 AC025755.1-201ENST00000521306 278 ntBASIC3.3□□□□□ -1.88
HOXC11O43248 AP002992.1-202ENST00000530842 551 ntTSL 2 BASIC3.3□□□□□ -1.88
HOXC11O43248 SARNP-203ENST00000552080 726 ntTSL 2 BASIC3.3□□□□□ -1.88
HOXC11O43248 AC007598.2-201ENST00000569490 539 ntTSL 3 BASIC3.3□□□□□ -1.88
HOXC11O43248 MIR4775-201ENST00000581168 75 ntBASIC3.3□□□□□ -1.88
HOXC11O43248 AC007948.1-201ENST00000581632 242 ntTSL 5 BASIC3.3□□□□□ -1.88
HOXC11O43248 AC118755.2-201ENST00000584676 212 ntTSL 3 BASIC3.3□□□□□ -1.88
HOXC11O43248 RPL23AP78-201ENST00000599928 470 ntBASIC3.3□□□□□ -1.88
HOXC11O43248 AC012507.3-201ENST00000603556 477 ntBASIC3.3□□□□□ -1.88
HOXC11O43248 AC025449.1-201ENST00000603896 529 ntBASIC3.3□□□□□ -1.88
HOXC11O43248 AC015540.1-201ENST00000615828 501 ntBASIC3.3□□□□□ -1.88
HOXC11O43248 AL158209.2-201ENST00000619266 216 ntBASIC3.3□□□□□ -1.88
HOXC11O43248 OR5AK4P-201ENST00000635912 903 ntBASIC3.3□□□□□ -1.88
HOXC11O43248 LINC00890-202ENST00000569275 4595 ntAPPRIS P1 TSL 1 (best) BASIC3.3□□□□□ -1.88
HOXC11O43248 PPIP5K2-203ENST00000414217 5842 ntAPPRIS P3 TSL 1 (best) BASIC3.29□□□□□ -1.88
HOXC11O43248 CKAP2P1-201ENST00000555477 2049 ntBASIC3.29□□□□□ -1.88
HOXC11O43248 RN7SKP226-201ENST00000364912 300 ntBASIC3.29□□□□□ -1.88
HOXC11O43248 TRAV26-1-201ENST00000390455 537 ntAPPRIS P1 BASIC3.29□□□□□ -1.88
HOXC11O43248 AL356057.2-201ENST00000403318 432 ntBASIC3.29□□□□□ -1.88
HOXC11O43248 RPL5P18-201ENST00000406671 891 ntBASIC3.29□□□□□ -1.88
HOXC11O43248 AL356134.1-201ENST00000419815 373 ntTSL 3 BASIC3.29□□□□□ -1.88
HOXC11O43248 AL353612.1-201ENST00000428769 465 ntTSL 3 BASIC3.29□□□□□ -1.88
HOXC11O43248 AC009969.1-201ENST00000438726 172 ntBASIC3.29□□□□□ -1.88
HOXC11O43248 AC098831.1-201ENST00000440661 216 ntBASIC3.29□□□□□ -1.88
HOXC11O43248 LINC01162-201ENST00000447262 447 ntTSL 5 BASIC3.29□□□□□ -1.88
HOXC11O43248 NANOGNBP1-201ENST00000448444 480 ntBASIC3.29□□□□□ -1.88
HOXC11O43248 AL020994.3-201ENST00000449126 274 ntTSL 3 BASIC3.29□□□□□ -1.88
HOXC11O43248 AC011825.1-201ENST00000484967 388 ntBASIC3.29□□□□□ -1.88
HOXC11O43248 LINC01487-202ENST00000490497 423 ntTSL 3 BASIC3.29□□□□□ -1.88
HOXC11O43248 LINC02101-201ENST00000505861 725 ntTSL 4 BASIC3.29□□□□□ -1.88
HOXC11O43248 AC110767.1-201ENST00000508374 239 ntTSL 3 BASIC3.29□□□□□ -1.88
HOXC11O43248 RNU6-572P-201ENST00000516724 80 ntBASIC3.29□□□□□ -1.88
HOXC11O43248 RNU6-685P-201ENST00000517088 95 ntBASIC3.29□□□□□ -1.88
HOXC11O43248 SNORA31.26-201ENST00000517250 137 ntBASIC3.29□□□□□ -1.88
HOXC11O43248 OR5V1-216ENST00000543825 1048 ntAPPRIS P1 BASIC3.29□□□□□ -1.88
HOXC11O43248 AC022960.1-201ENST00000582269 348 ntTSL 3 BASIC3.29□□□□□ -1.88
HOXC11O43248 MIR548AC-201ENST00000585049 88 ntBASIC3.29□□□□□ -1.88
HOXC11O43248 LINC01897-203ENST00000591503 369 ntTSL 2 BASIC3.29□□□□□ -1.88
HOXC11O43248 AC012254.1-201ENST00000592747 200 ntTSL 3 BASIC3.29□□□□□ -1.88
HOXC11O43248 AC103858.1-201ENST00000607019 476 ntTSL 3 BASIC3.29□□□□□ -1.88
HOXC11O43248 U6.42-201ENST00000618440 107 ntBASIC3.29□□□□□ -1.88
HOXC11O43248 AC139792.2-201ENST00000624218 587 ntBASIC3.29□□□□□ -1.88
HOXC11O43248 AC005609.4-201ENST00000625071 447 ntBASIC3.29□□□□□ -1.88
HOXC11O43248 OR4C15-202ENST00000642128 951 ntAPPRIS P1 BASIC3.29□□□□□ -1.88
HOXC11O43248 SEMA3D-201ENST00000284136 6265 ntAPPRIS P1 TSL 5 BASIC3.29□□□□□ -1.88
HOXC11O43248 MLF1-203ENST00000392822 2157 ntTSL 5 BASIC3.29□□□□□ -1.88
HOXC11O43248 ADAM3A-203ENST00000461344 2157 ntBASIC3.29□□□□□ -1.88
HOXC11O43248 DDX60L-207ENST00000505890 4568 ntTSL 2 BASIC3.29□□□□□ -1.88
HOXC11O43248 MACF1-201ENST00000289893 19141 ntTSL 5 BASIC3.29□□□□□ -1.88
HOXC11O43248 N4BP2L2-211ENST00000504114 2513 ntTSL 5 BASIC3.29□□□□□ -1.88
HOXC11O43248 OXR1-205ENST00000442977 2956 ntTSL 2 BASIC3.29□□□□□ -1.88
HOXC11O43248 ZNF680P1-201ENST00000436625 1469 ntBASIC3.28□□□□□ -1.88
HOXC11O43248 TRIQK-204ENST00000517858 1882 ntTSL 3 BASIC3.28□□□□□ -1.88
HOXC11O43248 NXPE1-204ENST00000536271 2289 ntTSL 1 (best) BASIC3.28□□□□□ -1.88
HOXC11O43248 PWAR6-201ENST00000552334 4618 ntBASIC3.28□□□□□ -1.88
HOXC11O43248 GPR183-201ENST00000376414 1700 ntAPPRIS P1 TSL 1 (best) BASIC3.28□□□□□ -1.88
HOXC11O43248 FILIP1L-206ENST00000471562 2854 ntTSL 1 (best) BASIC3.28□□□□□ -1.88
HOXC11O43248 MDM4-202ENST00000367180 547 ntTSL 3 BASIC3.28□□□□□ -1.88
HOXC11O43248 AKAP14-203ENST00000371425 793 ntAPPRIS ALT2 TSL 5 BASIC3.28□□□□□ -1.88
HOXC11O43248 RNU6-116P-201ENST00000384042 109 ntBASIC3.28□□□□□ -1.88
HOXC11O43248 AL138885.1-201ENST00000405921 675 ntBASIC3.28□□□□□ -1.88
HOXC11O43248 RNU6-193P-201ENST00000410977 107 ntBASIC3.28□□□□□ -1.88
HOXC11O43248 OR6C66P-201ENST00000414917 930 ntBASIC3.28□□□□□ -1.88
HOXC11O43248 AL645937.1-202ENST00000421799 937 ntBASIC3.28□□□□□ -1.88
HOXC11O43248 RPL23AP22-201ENST00000437556 453 ntBASIC3.28□□□□□ -1.88
HOXC11O43248 RPL23AP58-201ENST00000440453 469 ntBASIC3.28□□□□□ -1.88
HOXC11O43248 IGKV1OR-3-201ENST00000446944 348 ntBASIC3.28□□□□□ -1.88
HOXC11O43248 AC104058.1-201ENST00000448028 297 ntBASIC3.28□□□□□ -1.88
HOXC11O43248 RPS15AP27-201ENST00000449183 343 ntBASIC3.28□□□□□ -1.88
HOXC11O43248 AL441989.1-201ENST00000454204 382 ntTSL 3 BASIC3.28□□□□□ -1.88
HOXC11O43248 SNORA31.19-201ENST00000517079 126 ntBASIC3.28□□□□□ -1.88
HOXC11O43248 AP001318.2-201ENST00000533378 492 ntTSL 3 BASIC3.28□□□□□ -1.88
HOXC11O43248 AP000462.2-203ENST00000540545 715 ntTSL 5 BASIC3.28□□□□□ -1.88
HOXC11O43248 DEFB131E-202ENST00000602581 683 ntBASIC3.28□□□□□ -1.88
HOXC11O43248 AC078795.2-201ENST00000602835 1252 ntBASIC3.28□□□□□ -1.88
HOXC11O43248 AL022154.1-201ENST00000604698 785 ntBASIC3.28□□□□□ -1.88
HOXC11O43248 AC008945.2-201ENST00000606056 604 ntBASIC3.28□□□□□ -1.88
HOXC11O43248 AP001486.3-201ENST00000615334 372 ntBASIC3.28□□□□□ -1.88
HOXC11O43248 UCA1.1-201ENST00000620952 75 ntBASIC3.28□□□□□ -1.88
HOXC11O43248 AC011155.2-201ENST00000623202 216 ntBASIC3.28□□□□□ -1.88
HOXC11O43248 LINC02033-202ENST00000623312 492 ntTSL 3 BASIC3.28□□□□□ -1.88
HOXC11O43248 AL359740.1-201ENST00000624340 592 ntBASIC3.28□□□□□ -1.88
HOXC11O43248 AC068631.1-221ENST00000626006 592 ntTSL 5 BASIC3.28□□□□□ -1.88
HOXC11O43248 RBBP8-202ENST00000360790 2962 ntTSL 1 (best) BASIC3.28□□□□□ -1.88
HOXC11O43248 ELF1-201ENST00000239882 3566 ntAPPRIS P1 TSL 1 (best) BASIC3.28□□□□□ -1.88
HOXC11O43248 FPGT-TNNI3K-202ENST00000370895 7566 ntTSL 2 BASIC3.28□□□□□ -1.88
HOXC11O43248 TCF12-203ENST00000343827 3956 ntTSL 1 (best) BASIC3.27□□□□□ -1.89
HOXC11O43248 SEPT7-205ENST00000432293 1362 ntTSL 1 (best) BASIC3.27□□□□□ -1.89
HOXC11O43248 LINC00305-201ENST00000323355 873 ntTSL 1 (best) BASIC3.27□□□□□ -1.89
HOXC11O43248 Y_RNA.159-201ENST00000363674 87 ntBASIC3.27□□□□□ -1.89
HOXC11O43248 RNU6-1029P-201ENST00000384109 107 ntBASIC3.27□□□□□ -1.89
HOXC11O43248 OR5H8-201ENST00000394191 1045 ntAPPRIS P1 BASIC3.27□□□□□ -1.89
HOXC11O43248 AL139039.1-201ENST00000401900 692 ntBASIC3.27□□□□□ -1.89
HOXC11O43248 RNU2-49P-201ENST00000410666 184 ntBASIC3.27□□□□□ -1.89
HOXC11O43248 MTCYBP5-201ENST00000423752 1135 ntBASIC3.27□□□□□ -1.89
HOXC11O43248 GTF2IP20-201ENST00000431663 360 ntBASIC3.27□□□□□ -1.89
HOXC11O43248 RPS15AP9-201ENST00000439856 381 ntBASIC3.27□□□□□ -1.89
HOXC11O43248 AL078601.1-201ENST00000444542 271 ntBASIC3.27□□□□□ -1.89
HOXC11O43248 AL162395.1-201ENST00000457882 422 ntBASIC3.27□□□□□ -1.89
HOXC11O43248 MTND2P33-201ENST00000506452 1031 ntBASIC3.27□□□□□ -1.89
Retrieved 100 of 98,524 protein–RNA pairs in 83.4 ms