Protein–RNA interactions for Protein: Q9NY46

SCN3A, Sodium channel protein type 3 subunit alpha, humanhuman

Predictions only

Length 2,000 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN3AQ9NY46 AP003400.5-201ENST00000624827 617 ntBASIC1.23□□□□□ -2.21
SCN3AQ9NY46 ZNF260-203ENST00000588993 4174 ntAPPRIS P1 TSL 1 (best) BASIC1.23□□□□□ -2.21
SCN3AQ9NY46 TMEM161B-210ENST00000511218 1351 ntTSL 2 BASIC1.23□□□□□ -2.21
SCN3AQ9NY46 SENP7-207ENST00000394095 4945 ntAPPRIS P3 TSL 1 (best) BASIC1.23□□□□□ -2.21
SCN3AQ9NY46 MTND5P30-201ENST00000452896 1731 ntBASIC1.22□□□□□ -2.21
SCN3AQ9NY46 Y_RNA.25-201ENST00000362528 102 ntBASIC1.22□□□□□ -2.21
SCN3AQ9NY46 RNU6-216P-201ENST00000363282 104 ntBASIC1.22□□□□□ -2.21
SCN3AQ9NY46 RPL22P22-201ENST00000395439 379 ntBASIC1.22□□□□□ -2.21
SCN3AQ9NY46 RPL23AP29-201ENST00000397284 453 ntBASIC1.22□□□□□ -2.21
SCN3AQ9NY46 AC092634.6-201ENST00000418558 192 ntBASIC1.22□□□□□ -2.21
SCN3AQ9NY46 ATG12P2-201ENST00000456830 416 ntBASIC1.22□□□□□ -2.21
SCN3AQ9NY46 AL163540.1-201ENST00000485382 386 ntBASIC1.22□□□□□ -2.21
SCN3AQ9NY46 AC113347.4-201ENST00000506032 685 ntTSL 3 BASIC1.22□□□□□ -2.21
SCN3AQ9NY46 AC087518.1-201ENST00000524098 187 ntTSL 3 BASIC1.22□□□□□ -2.21
SCN3AQ9NY46 AP002884.4-201ENST00000527589 594 ntTSL 3 BASIC1.22□□□□□ -2.21
SCN3AQ9NY46 AC025030.2-201ENST00000552558 567 ntTSL 2 BASIC1.22□□□□□ -2.21
SCN3AQ9NY46 BIRC6-AS2-201ENST00000623382 589 ntTSL 2 BASIC1.22□□□□□ -2.21
SCN3AQ9NY46 MTND1P37-201ENST00000636562 264 ntBASIC1.22□□□□□ -2.21
SCN3AQ9NY46 AC008555.8-201ENST00000623602 2168 ntBASIC1.22□□□□□ -2.21
SCN3AQ9NY46 ASPN-202ENST00000375544 2470 ntAPPRIS P1 TSL 1 (best) BASIC1.22□□□□□ -2.21
SCN3AQ9NY46 RNU6-270P-201ENST00000364131 105 ntBASIC1.22□□□□□ -2.21
SCN3AQ9NY46 MIR489-201ENST00000384923 84 ntBASIC1.22□□□□□ -2.21
SCN3AQ9NY46 MIR506-201ENST00000384998 124 ntBASIC1.22□□□□□ -2.21
SCN3AQ9NY46 ZNF365-203ENST00000395249 433 ntTSL 1 (best) BASIC1.22□□□□□ -2.21
SCN3AQ9NY46 MORN2-203ENST00000409131 544 ntTSL 5 BASIC1.22□□□□□ -2.21
SCN3AQ9NY46 HMGB1P49-201ENST00000418882 569 ntBASIC1.22□□□□□ -2.21
SCN3AQ9NY46 USP9YP26-201ENST00000421008 661 ntBASIC1.22□□□□□ -2.21
SCN3AQ9NY46 CR848007.2-201ENST00000424918 787 ntBASIC1.22□□□□□ -2.21
SCN3AQ9NY46 AC023128.1-201ENST00000432431 799 ntTSL 3 BASIC1.22□□□□□ -2.21
SCN3AQ9NY46 LARP1BP2-201ENST00000486594 519 ntBASIC1.22□□□□□ -2.21
SCN3AQ9NY46 AC113420.1-201ENST00000507903 571 ntBASIC1.22□□□□□ -2.21
SCN3AQ9NY46 AC107909.2-201ENST00000520844 493 ntTSL 3 BASIC1.22□□□□□ -2.21
SCN3AQ9NY46 AP002748.2-201ENST00000528671 348 ntBASIC1.22□□□□□ -2.21
SCN3AQ9NY46 AP000462.2-203ENST00000540545 715 ntTSL 5 BASIC1.22□□□□□ -2.21
SCN3AQ9NY46 AC012435.1-202ENST00000568772 240 ntBASIC1.22□□□□□ -2.21
SCN3AQ9NY46 ADAM3B-201ENST00000569937 840 ntBASIC1.22□□□□□ -2.21
SCN3AQ9NY46 AP001429.1-201ENST00000602568 530 ntBASIC1.22□□□□□ -2.21
SCN3AQ9NY46 AL592148.2-201ENST00000612210 372 ntBASIC1.22□□□□□ -2.21
SCN3AQ9NY46 AC084824.4-201ENST00000620106 731 ntBASIC1.22□□□□□ -2.21
SCN3AQ9NY46 AC073592.7-201ENST00000623659 507 ntBASIC1.22□□□□□ -2.21
SCN3AQ9NY46 TRIQK-201ENST00000378861 1596 ntAPPRIS P1 TSL 1 (best) BASIC1.21□□□□□ -2.22
SCN3AQ9NY46 MRPL42-202ENST00000393128 1983 ntAPPRIS ALT1 TSL 3 BASIC1.21□□□□□ -2.22
SCN3AQ9NY46 SPAG11A-202ENST00000326625 445 ntTSL 5 BASIC1.21□□□□□ -2.22
SCN3AQ9NY46 RNU6-839P-201ENST00000363347 108 ntBASIC1.21□□□□□ -2.22
SCN3AQ9NY46 Y_RNA.796-201ENST00000364268 102 ntBASIC1.21□□□□□ -2.22
SCN3AQ9NY46 Y_RNA.799-201ENST00000364992 102 ntBASIC1.21□□□□□ -2.22
SCN3AQ9NY46 Y_RNA.466-201ENST00000384294 113 ntBASIC1.21□□□□□ -2.22
SCN3AQ9NY46 SNORD116-23-201ENST00000384645 92 ntBASIC1.21□□□□□ -2.22
SCN3AQ9NY46 AL357375.1-201ENST00000424274 525 ntTSL 3 BASIC1.21□□□□□ -2.22
SCN3AQ9NY46 EIF4EP4-201ENST00000424916 578 ntBASIC1.21□□□□□ -2.22
SCN3AQ9NY46 AC008850.1-201ENST00000427546 362 ntBASIC1.21□□□□□ -2.22
SCN3AQ9NY46 SPANXN4-202ENST00000446864 431 ntAPPRIS P2 TSL 1 (best) BASIC1.21□□□□□ -2.22
SCN3AQ9NY46 LINC01564-201ENST00000448327 566 ntTSL 3 BASIC1.21□□□□□ -2.22
SCN3AQ9NY46 AL109763.1-201ENST00000455391 461 ntTSL 2 BASIC1.21□□□□□ -2.22
SCN3AQ9NY46 RNU7-59P-201ENST00000459101 61 ntBASIC1.21□□□□□ -2.22
SCN3AQ9NY46 LINC02173-201ENST00000504132 521 ntTSL 2 BASIC1.21□□□□□ -2.22
SCN3AQ9NY46 AC112518.2-201ENST00000508565 425 ntBASIC1.21□□□□□ -2.22
SCN3AQ9NY46 AC068993.2-201ENST00000546563 395 ntTSL 5 BASIC1.21□□□□□ -2.22
SCN3AQ9NY46 HSBP1P1-201ENST00000555205 166 ntBASIC1.21□□□□□ -2.22
SCN3AQ9NY46 MIR4765-201ENST00000585007 77 ntBASIC1.21□□□□□ -2.22
SCN3AQ9NY46 BX546450.2-201ENST00000602419 435 ntTSL 5 BASIC1.21□□□□□ -2.22
SCN3AQ9NY46 AC004853.1-201ENST00000604902 698 ntBASIC1.21□□□□□ -2.22
SCN3AQ9NY46 AC090948.3-201ENST00000606713 551 ntTSL 4 BASIC1.21□□□□□ -2.22
SCN3AQ9NY46 AL512598.1-201ENST00000610158 273 ntBASIC1.21□□□□□ -2.22
SCN3AQ9NY46 TMBIM4-213ENST00000613669 851 ntTSL 5 BASIC1.21□□□□□ -2.22
SCN3AQ9NY46 ANKRD26P2-201ENST00000445530 1710 ntBASIC1.21□□□□□ -2.22
SCN3AQ9NY46 SNHG14-215ENST00000551631 4008 ntTSL 5 BASIC1.2□□□□□ -2.22
SCN3AQ9NY46 LINC01111-201ENST00000518732 1663 ntTSL 1 (best) BASIC1.2□□□□□ -2.22
SCN3AQ9NY46 ZNF679-201ENST00000255746 1297 ntAPPRIS P1 TSL 1 (best) BASIC1.2□□□□□ -2.22
SCN3AQ9NY46 RNU6-140P-201ENST00000384566 108 ntBASIC1.2□□□□□ -2.22
SCN3AQ9NY46 Y_RNA.548-201ENST00000384656 105 ntBASIC1.2□□□□□ -2.22
SCN3AQ9NY46 MIR1276-201ENST00000408707 83 ntBASIC1.2□□□□□ -2.22
SCN3AQ9NY46 BX664727.1-201ENST00000416024 466 ntBASIC1.2□□□□□ -2.22
SCN3AQ9NY46 AL590383.1-201ENST00000428602 75 ntBASIC1.2□□□□□ -2.22
SCN3AQ9NY46 AL589935.1-209ENST00000432050 418 ntTSL 5 BASIC1.2□□□□□ -2.22
SCN3AQ9NY46 MYCBP2-AS1-203ENST00000450627 349 ntTSL 3 BASIC1.2□□□□□ -2.22
SCN3AQ9NY46 HMGN2P18-201ENST00000450680 270 ntBASIC1.2□□□□□ -2.22
SCN3AQ9NY46 RPS15AP17-201ENST00000470598 390 ntBASIC1.2□□□□□ -2.22
SCN3AQ9NY46 LINC02201-201ENST00000508992 468 ntTSL 2 BASIC1.2□□□□□ -2.22
SCN3AQ9NY46 AC022880.1-201ENST00000534017 973 ntBASIC1.2□□□□□ -2.22
SCN3AQ9NY46 AC114546.1-201ENST00000560140 473 ntTSL 3 BASIC1.2□□□□□ -2.22
SCN3AQ9NY46 AP005136.1-201ENST00000579765 429 ntBASIC1.2□□□□□ -2.22
SCN3AQ9NY46 AC109454.4-201ENST00000623411 649 ntBASIC1.2□□□□□ -2.22
SCN3AQ9NY46 FANCD2-213ENST00000625535 117 ntTSL 5 BASIC1.2□□□□□ -2.22
SCN3AQ9NY46 MKKS-204ENST00000639674 192 ntBASIC1.2□□□□□ -2.22
SCN3AQ9NY46 AC242426.3-202ENST00000607149 2397 ntTSL 5 BASIC1.2□□□□□ -2.22
SCN3AQ9NY46 DENND4A-209ENST00000635620 5887 ntTSL 5 BASIC1.2□□□□□ -2.22
SCN3AQ9NY46 RNU1-57P-201ENST00000384491 166 ntBASIC1.2□□□□□ -2.22
SCN3AQ9NY46 AL590432.1-201ENST00000420071 566 ntTSL 2 BASIC1.2□□□□□ -2.22
SCN3AQ9NY46 AL161935.1-201ENST00000420945 421 ntTSL 3 BASIC1.2□□□□□ -2.22
SCN3AQ9NY46 DIAPH3-AS1-201ENST00000422052 428 ntTSL 3 BASIC1.2□□□□□ -2.22
SCN3AQ9NY46 AP000235.1-201ENST00000424017 479 ntTSL 3 BASIC1.2□□□□□ -2.22
SCN3AQ9NY46 AC092393.1-201ENST00000439625 742 ntBASIC1.2□□□□□ -2.22
SCN3AQ9NY46 RPL7P55-201ENST00000450522 746 ntBASIC1.2□□□□□ -2.22
SCN3AQ9NY46 AL137159.1-201ENST00000452808 512 ntBASIC1.2□□□□□ -2.22
SCN3AQ9NY46 RNA5SP445-201ENST00000515889 115 ntBASIC1.2□□□□□ -2.22
SCN3AQ9NY46 MIR892C-201ENST00000516410 77 ntBASIC1.2□□□□□ -2.22
SCN3AQ9NY46 AC108449.1-202ENST00000517632 478 ntTSL 3 BASIC1.2□□□□□ -2.22
SCN3AQ9NY46 C18orf54-203ENST00000578138 776 ntTSL 3 BASIC1.2□□□□□ -2.22
SCN3AQ9NY46 MIR3660-201ENST00000584845 100 ntBASIC1.2□□□□□ -2.22
Retrieved 100 of 98,524 protein–RNA pairs in 116.8 ms