Protein–RNA interactions for Protein: Q9H400

LIME1, Lck-interacting transmembrane adapter 1, humanhuman

Predictions only

Length 295 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1Q9H400 ELF1-201ENST00000239882 3566 ntAPPRIS P1 TSL 1 (best) BASIC2.55□□□□□ -2
LIME1Q9H400 METTL18-201ENST00000303469 1426 ntAPPRIS P1 TSL 1 (best) BASIC2.55□□□□□ -2
LIME1Q9H400 AC073325.2-201ENST00000339545 159 ntBASIC2.55□□□□□ -2
LIME1Q9H400 RNU6-282P-201ENST00000365357 103 ntBASIC2.55□□□□□ -2
LIME1Q9H400 DYNLT3P1-201ENST00000378574 347 ntBASIC2.55□□□□□ -2
LIME1Q9H400 CRLS1-202ENST00000378868 994 ntTSL 5 BASIC2.55□□□□□ -2
LIME1Q9H400 OR5H15-201ENST00000383696 930 ntBASIC2.55□□□□□ -2
LIME1Q9H400 RNU6-1103P-201ENST00000384150 107 ntBASIC2.55□□□□□ -2
LIME1Q9H400 RNU6-74P-201ENST00000384235 107 ntBASIC2.55□□□□□ -2
LIME1Q9H400 SNORD116-4-201ENST00000384733 96 ntBASIC2.55□□□□□ -2
LIME1Q9H400 RNU6ATAC16P-201ENST00000408591 138 ntBASIC2.55□□□□□ -2
LIME1Q9H400 AC009158.1-206ENST00000417476 454 ntTSL 3 BASIC2.55□□□□□ -2
LIME1Q9H400 BX295541.1-201ENST00000417774 250 ntBASIC2.55□□□□□ -2
LIME1Q9H400 AL353612.1-201ENST00000428769 465 ntTSL 3 BASIC2.55□□□□□ -2
LIME1Q9H400 GPR143P-201ENST00000434155 205 ntBASIC2.55□□□□□ -2
LIME1Q9H400 RPS29P6-201ENST00000438196 145 ntBASIC2.55□□□□□ -2
LIME1Q9H400 AC079781.2-201ENST00000446424 169 ntBASIC2.55□□□□□ -2
LIME1Q9H400 AC093392.2-201ENST00000450682 337 ntBASIC2.55□□□□□ -2
LIME1Q9H400 C1DP4-201ENST00000455429 424 ntBASIC2.55□□□□□ -2
LIME1Q9H400 AC105252.1-201ENST00000503089 286 ntBASIC2.55□□□□□ -2
LIME1Q9H400 YWHAEP4-201ENST00000505390 198 ntBASIC2.55□□□□□ -2
LIME1Q9H400 RNU6-410P-201ENST00000517006 107 ntBASIC2.55□□□□□ -2
LIME1Q9H400 OR5B19P-201ENST00000531766 928 ntBASIC2.55□□□□□ -2
LIME1Q9H400 LINC02350-201ENST00000544419 480 ntTSL 3 BASIC2.55□□□□□ -2
LIME1Q9H400 SLC27A2-203ENST00000544960 2025 ntTSL 2 BASIC2.55□□□□□ -2
LIME1Q9H400 AC090023.1-201ENST00000545750 443 ntTSL 3 BASIC2.55□□□□□ -2
LIME1Q9H400 AL391840.1-201ENST00000571144 367 ntBASIC2.55□□□□□ -2
LIME1Q9H400 AC005304.3-201ENST00000581533 511 ntTSL 3 BASIC2.55□□□□□ -2
LIME1Q9H400 AC073648.5-201ENST00000603502 305 ntBASIC2.55□□□□□ -2
LIME1Q9H400 AL136363.2-201ENST00000604173 851 ntBASIC2.55□□□□□ -2
LIME1Q9H400 MIR663AHG-231ENST00000609044 590 ntTSL 5 BASIC2.55□□□□□ -2
LIME1Q9H400 AC104073.3-201ENST00000610942 955 ntBASIC2.55□□□□□ -2
LIME1Q9H400 AC087241.4-201ENST00000612441 480 ntBASIC2.55□□□□□ -2
LIME1Q9H400 LINC02033-202ENST00000623312 492 ntTSL 3 BASIC2.55□□□□□ -2
LIME1Q9H400 AL109837.2-201ENST00000632608 295 ntTSL 3 BASIC2.55□□□□□ -2
LIME1Q9H400 RICTOR-201ENST00000296782 7505 ntTSL 1 (best) BASIC2.55□□□□□ -2
LIME1Q9H400 CREBRF-201ENST00000296953 7778 ntAPPRIS P1 TSL 1 (best) BASIC2.55□□□□□ -2
LIME1Q9H400 NBPF20-202ENST00000392971 18450 ntAPPRIS P2 TSL 5 BASIC2.55□□□□□ -2
LIME1Q9H400 AC100800.1-201ENST00000524252 2054 ntTSL 1 (best) BASIC2.54□□□□□ -2
LIME1Q9H400 MTND5P29-201ENST00000458676 1807 ntBASIC2.54□□□□□ -2
LIME1Q9H400 GRAMD1C-202ENST00000440446 3475 ntTSL 1 (best) BASIC2.54□□□□□ -2
LIME1Q9H400 CFHR4-204ENST00000608469 1601 ntTSL 1 (best) BASIC2.54□□□□□ -2
LIME1Q9H400 API5P2-201ENST00000397055 1498 ntBASIC2.54□□□□□ -2
LIME1Q9H400 UBE2L2-201ENST00000254302 429 ntBASIC2.54□□□□□ -2
LIME1Q9H400 RNU6-1097P-201ENST00000363586 107 ntBASIC2.54□□□□□ -2
LIME1Q9H400 RNY1P12-201ENST00000364251 105 ntBASIC2.54□□□□□ -2
LIME1Q9H400 Y_RNA.245-201ENST00000364493 95 ntBASIC2.54□□□□□ -2
LIME1Q9H400 SNORA51.4-201ENST00000364993 124 ntBASIC2.54□□□□□ -2
LIME1Q9H400 Y_RNA.367-201ENST00000365544 101 ntBASIC2.54□□□□□ -2
LIME1Q9H400 Y_RNA.534-201ENST00000384599 112 ntBASIC2.54□□□□□ -2
LIME1Q9H400 TRAJ31-201ENST00000390506 57 ntAPPRIS P1 BASIC2.54□□□□□ -2
LIME1Q9H400 RNU2-39P-201ENST00000410604 198 ntBASIC2.54□□□□□ -2
LIME1Q9H400 AC064871.1-202ENST00000413954 382 ntTSL 5 BASIC2.54□□□□□ -2
LIME1Q9H400 AL078645.1-201ENST00000414377 423 ntTSL 3 BASIC2.54□□□□□ -2
LIME1Q9H400 AL109913.1-201ENST00000421173 514 ntBASIC2.54□□□□□ -2
LIME1Q9H400 AC083900.1-201ENST00000421964 469 ntTSL 2 BASIC2.54□□□□□ -2
LIME1Q9H400 AC104651.1-201ENST00000427559 735 ntBASIC2.54□□□□□ -2
LIME1Q9H400 AL138775.1-201ENST00000429539 575 ntTSL 1 (best) BASIC2.54□□□□□ -2
LIME1Q9H400 USP9YP14-201ENST00000430663 563 ntBASIC2.54□□□□□ -2
LIME1Q9H400 MTCO2P11-201ENST00000431069 680 ntBASIC2.54□□□□□ -2
LIME1Q9H400 AC087499.2-201ENST00000432861 149 ntBASIC2.54□□□□□ -2
LIME1Q9H400 LINC01797-202ENST00000433432 765 ntTSL 3 BASIC2.54□□□□□ -2
LIME1Q9H400 AC092839.1-201ENST00000433475 536 ntTSL 4 BASIC2.54□□□□□ -2
LIME1Q9H400 AL033504.1-204ENST00000434985 413 ntTSL 2 BASIC2.54□□□□□ -2
LIME1Q9H400 AL121890.1-201ENST00000435457 205 ntBASIC2.54□□□□□ -2
LIME1Q9H400 AC132479.1-201ENST00000449160 144 ntBASIC2.54□□□□□ -2
LIME1Q9H400 MTUS2-AS2-203ENST00000452602 651 ntTSL 3 BASIC2.54□□□□□ -2
LIME1Q9H400 OFD1P4Y-201ENST00000455273 1179 ntBASIC2.54□□□□□ -2
LIME1Q9H400 AL139260.1-202ENST00000456813 441 ntTSL 3 BASIC2.54□□□□□ -2
LIME1Q9H400 APOA2-205ENST00000468465 421 ntTSL 2 BASIC2.54□□□□□ -2
LIME1Q9H400 RN7SL633P-201ENST00000488974 297 ntBASIC2.54□□□□□ -2
LIME1Q9H400 AC092666.1-201ENST00000492054 573 ntTSL 4 BASIC2.54□□□□□ -2
LIME1Q9H400 LINC02377-201ENST00000500169 450 ntTSL 3 BASIC2.54□□□□□ -2
LIME1Q9H400 AC083906.5-201ENST00000503722 328 ntBASIC2.54□□□□□ -2
LIME1Q9H400 AC093206.1-201ENST00000515364 497 ntTSL 3 BASIC2.54□□□□□ -2
LIME1Q9H400 RNU6-928P-201ENST00000516876 104 ntBASIC2.54□□□□□ -2
LIME1Q9H400 RNA5SP290-201ENST00000517133 127 ntBASIC2.54□□□□□ -2
LIME1Q9H400 HTN3-202ENST00000526767 578 ntAPPRIS P2 TSL 1 (best) BASIC2.54□□□□□ -2
LIME1Q9H400 AC104237.1-201ENST00000527443 539 ntTSL 4 BASIC2.54□□□□□ -2
LIME1Q9H400 AL359237.1-201ENST00000554305 826 ntTSL 5 BASIC2.54□□□□□ -2
LIME1Q9H400 AC009063.1-201ENST00000563342 702 ntBASIC2.54□□□□□ -2
LIME1Q9H400 AC010546.1-201ENST00000569391 485 ntBASIC2.54□□□□□ -2
LIME1Q9H400 MIR4506-201ENST00000584693 77 ntBASIC2.54□□□□□ -2
LIME1Q9H400 AC091805.2-201ENST00000603848 235 ntBASIC2.54□□□□□ -2
LIME1Q9H400 AL121992.2-201ENST00000606262 256 ntBASIC2.54□□□□□ -2
LIME1Q9H400 MIR98-201ENST00000606724 119 ntBASIC2.54□□□□□ -2
LIME1Q9H400 FTX_3.1-201ENST00000610451 147 ntBASIC2.54□□□□□ -2
LIME1Q9H400 AC008498.1-201ENST00000613012 531 ntBASIC2.54□□□□□ -2
LIME1Q9H400 AP001486.3-201ENST00000615334 372 ntBASIC2.54□□□□□ -2
LIME1Q9H400 GPR171-203ENST00000617554 960 ntAPPRIS P1 BASIC2.54□□□□□ -2
LIME1Q9H400 AC007318.2-201ENST00000620999 243 ntBASIC2.54□□□□□ -2
LIME1Q9H400 HS1BP3-208ENST00000631166 78 ntTSL 5 BASIC2.54□□□□□ -2
LIME1Q9H400 SEPT14P19-202ENST00000632397 370 ntTSL 3 BASIC2.54□□□□□ -2
LIME1Q9H400 ROS1-202ENST00000368508 7435 ntAPPRIS P2 TSL 1 (best) BASIC2.54□□□□□ -2
LIME1Q9H400 HERC5-203ENST00000508159 2243 ntTSL 2 BASIC2.54□□□□□ -2
LIME1Q9H400 STAU2-201ENST00000355780 4061 ntTSL 1 (best) BASIC2.53□□□□□ -2
LIME1Q9H400 LIPI-203ENST00000536861 1529 ntAPPRIS ALT2 TSL 1 (best) BASIC2.53□□□□□ -2
LIME1Q9H400 AL589740.1-207ENST00000607823 1962 ntTSL 5 BASIC2.53□□□□□ -2
LIME1Q9H400 EFR3A-202ENST00000519656 5247 ntTSL 1 (best) BASIC2.53□□□□□ -2
LIME1Q9H400 RNU6-181P-201ENST00000363225 107 ntBASIC2.53□□□□□ -2
Retrieved 100 of 98,524 protein–RNA pairs in 102.6 ms