Protein–RNA interactions for Protein: Q9BQI4

CCDC3, Coiled-coil domain-containing protein 3, humanhuman

Predictions only

Length 270 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3Q9BQI4 RNU6-259P-201ENST00000383999 107 ntBASIC2.84□□□□□ -1.95
CCDC3Q9BQI4 SNORA18.3-201ENST00000384122 132 ntBASIC2.84□□□□□ -1.95
CCDC3Q9BQI4 RNU6-74P-201ENST00000384235 107 ntBASIC2.84□□□□□ -1.95
CCDC3Q9BQI4 CCDC126-203ENST00000410069 890 ntAPPRIS P1 TSL 1 (best) BASIC2.84□□□□□ -1.95
CCDC3Q9BQI4 RNU6-387P-201ENST00000411331 105 ntBASIC2.84□□□□□ -1.95
CCDC3Q9BQI4 AL078645.1-201ENST00000414377 423 ntTSL 3 BASIC2.84□□□□□ -1.95
CCDC3Q9BQI4 AC007463.1-201ENST00000416534 734 ntTSL 3 BASIC2.84□□□□□ -1.95
CCDC3Q9BQI4 AL109913.1-201ENST00000421173 514 ntBASIC2.84□□□□□ -1.95
CCDC3Q9BQI4 AC012498.1-201ENST00000424037 437 ntBASIC2.84□□□□□ -1.95
CCDC3Q9BQI4 MTCO2P11-201ENST00000431069 680 ntBASIC2.84□□□□□ -1.95
CCDC3Q9BQI4 LINC01797-202ENST00000433432 765 ntTSL 3 BASIC2.84□□□□□ -1.95
CCDC3Q9BQI4 FABP5P15-201ENST00000453566 214 ntBASIC2.84□□□□□ -1.95
CCDC3Q9BQI4 MTCYBP1-201ENST00000454315 1119 ntBASIC2.84□□□□□ -1.95
CCDC3Q9BQI4 IFT74-AS1-201ENST00000456198 405 ntTSL 2 BASIC2.84□□□□□ -1.95
CCDC3Q9BQI4 LINC02377-201ENST00000500169 450 ntTSL 3 BASIC2.84□□□□□ -1.95
CCDC3Q9BQI4 AC105389.2-201ENST00000506475 435 ntTSL 3 BASIC2.84□□□□□ -1.95
CCDC3Q9BQI4 AC108078.1-201ENST00000508073 725 ntBASIC2.84□□□□□ -1.95
CCDC3Q9BQI4 RNA5SP385-201ENST00000515947 110 ntBASIC2.84□□□□□ -1.95
CCDC3Q9BQI4 AP003718.1-201ENST00000529884 583 ntTSL 4 BASIC2.84□□□□□ -1.95
CCDC3Q9BQI4 AP003498.1-201ENST00000532530 347 ntTSL 3 BASIC2.84□□□□□ -1.95
CCDC3Q9BQI4 LINC02350-201ENST00000544419 480 ntTSL 3 BASIC2.84□□□□□ -1.95
CCDC3Q9BQI4 AC009063.1-201ENST00000563342 702 ntBASIC2.84□□□□□ -1.95
CCDC3Q9BQI4 AC098826.3-201ENST00000603823 466 ntBASIC2.84□□□□□ -1.95
CCDC3Q9BQI4 ATP1B3P1-201ENST00000605365 821 ntBASIC2.84□□□□□ -1.95
CCDC3Q9BQI4 AC007619.2-201ENST00000605743 379 ntBASIC2.84□□□□□ -1.95
CCDC3Q9BQI4 AC009161.2-201ENST00000624626 138 ntBASIC2.84□□□□□ -1.95
CCDC3Q9BQI4 AC005609.4-201ENST00000625071 447 ntBASIC2.84□□□□□ -1.95
CCDC3Q9BQI4 AL109837.2-201ENST00000632608 295 ntTSL 3 BASIC2.84□□□□□ -1.95
CCDC3Q9BQI4 PRKACB-218ENST00000610703 4240 ntTSL 2 BASIC2.84□□□□□ -1.95
CCDC3Q9BQI4 PRKACB-207ENST00000394838 4294 ntTSL 5 BASIC2.84□□□□□ -1.95
CCDC3Q9BQI4 SEPT7-205ENST00000432293 1362 ntTSL 1 (best) BASIC2.84□□□□□ -1.96
CCDC3Q9BQI4 FAM214A-201ENST00000261844 4217 ntAPPRIS P1 TSL 1 (best) BASIC2.84□□□□□ -1.96
CCDC3Q9BQI4 LRRC70-201ENST00000334994 2249 ntAPPRIS P1 TSL 1 (best) BASIC2.84□□□□□ -1.96
CCDC3Q9BQI4 AC004972.1-201ENST00000623934 2209 ntBASIC2.83□□□□□ -1.96
CCDC3Q9BQI4 MTND5P26-201ENST00000426018 1752 ntBASIC2.83□□□□□ -1.96
CCDC3Q9BQI4 ZBTB8OS-201ENST00000341885 312 ntTSL 1 (best) BASIC2.83□□□□□ -1.96
CCDC3Q9BQI4 SNORA9.2-201ENST00000365361 133 ntBASIC2.83□□□□□ -1.96
CCDC3Q9BQI4 SNORA46-201ENST00000384762 135 ntBASIC2.83□□□□□ -1.96
CCDC3Q9BQI4 GSTA9P-201ENST00000406231 611 ntBASIC2.83□□□□□ -1.96
CCDC3Q9BQI4 RNA5SP184-201ENST00000411071 108 ntBASIC2.83□□□□□ -1.96
CCDC3Q9BQI4 AC008440.2-201ENST00000413496 423 ntTSL 5 BASIC2.83□□□□□ -1.96
CCDC3Q9BQI4 AC104462.1-201ENST00000414565 447 ntTSL 2 BASIC2.83□□□□□ -1.96
CCDC3Q9BQI4 LINC01351-201ENST00000424735 526 ntTSL 2 BASIC2.83□□□□□ -1.96
CCDC3Q9BQI4 AC104651.1-201ENST00000427559 735 ntBASIC2.83□□□□□ -1.96
CCDC3Q9BQI4 AL353612.1-201ENST00000428769 465 ntTSL 3 BASIC2.83□□□□□ -1.96
CCDC3Q9BQI4 KRTAP19-11P-201ENST00000439851 104 ntBASIC2.83□□□□□ -1.96
CCDC3Q9BQI4 LINC01510-201ENST00000441991 468 ntTSL 3 BASIC2.83□□□□□ -1.96
CCDC3Q9BQI4 DARS-AS1-205ENST00000444649 558 ntTSL 3 BASIC2.83□□□□□ -1.96
CCDC3Q9BQI4 AC104472.2-201ENST00000469035 601 ntBASIC2.83□□□□□ -1.96
CCDC3Q9BQI4 AC010493.1-201ENST00000513479 292 ntBASIC2.83□□□□□ -1.96
CCDC3Q9BQI4 AC008700.1-202ENST00000513657 468 ntTSL 5 BASIC2.83□□□□□ -1.96
CCDC3Q9BQI4 AP001189.6-201ENST00000528781 831 ntTSL 1 (best) BASIC2.83□□□□□ -1.96
CCDC3Q9BQI4 AC090023.1-201ENST00000545750 443 ntTSL 3 BASIC2.83□□□□□ -1.96
CCDC3Q9BQI4 AC090607.4-201ENST00000558192 369 ntTSL 3 BASIC2.83□□□□□ -1.96
CCDC3Q9BQI4 CYCSP39-201ENST00000565821 309 ntBASIC2.83□□□□□ -1.96
CCDC3Q9BQI4 AC138761.3-201ENST00000579993 334 ntBASIC2.83□□□□□ -1.96
CCDC3Q9BQI4 AC005304.3-201ENST00000581533 511 ntTSL 3 BASIC2.83□□□□□ -1.96
CCDC3Q9BQI4 AC098848.2-201ENST00000588023 330 ntBASIC2.83□□□□□ -1.96
CCDC3Q9BQI4 DPPA3P3-201ENST00000603842 430 ntBASIC2.83□□□□□ -1.96
CCDC3Q9BQI4 AL022154.1-201ENST00000604698 785 ntBASIC2.83□□□□□ -1.96
CCDC3Q9BQI4 AL136363.1-201ENST00000605349 337 ntBASIC2.83□□□□□ -1.96
CCDC3Q9BQI4 AC098614.4-201ENST00000607601 462 ntBASIC2.83□□□□□ -1.96
CCDC3Q9BQI4 FTX_3.1-201ENST00000610451 147 ntBASIC2.83□□□□□ -1.96
CCDC3Q9BQI4 AC015540.1-201ENST00000615828 501 ntBASIC2.83□□□□□ -1.96
CCDC3Q9BQI4 LINC02033-202ENST00000623312 492 ntTSL 3 BASIC2.83□□□□□ -1.96
CCDC3Q9BQI4 AL359740.1-201ENST00000624340 592 ntBASIC2.83□□□□□ -1.96
CCDC3Q9BQI4 AC008505.1-205ENST00000637847 703 ntTSL 5 BASIC2.83□□□□□ -1.96
CCDC3Q9BQI4 OR4M1-202ENST00000641200 3493 ntAPPRIS P1 BASIC2.83□□□□□ -1.96
CCDC3Q9BQI4 AL136360.1-201ENST00000503377 1900 ntBASIC2.83□□□□□ -1.96
CCDC3Q9BQI4 AC103710.2-202ENST00000641454 2853 ntBASIC2.82□□□□□ -1.96
CCDC3Q9BQI4 AC096644.4-201ENST00000563417 2912 ntBASIC2.82□□□□□ -1.96
CCDC3Q9BQI4 RNU6-270P-201ENST00000364131 105 ntBASIC2.82□□□□□ -1.96
CCDC3Q9BQI4 Y_RNA.245-201ENST00000364493 95 ntBASIC2.82□□□□□ -1.96
CCDC3Q9BQI4 TSHB-202ENST00000369517 474 ntAPPRIS P1 TSL 1 (best) BASIC2.82□□□□□ -1.96
CCDC3Q9BQI4 RNA5SP252-201ENST00000391131 119 ntBASIC2.82□□□□□ -1.96
CCDC3Q9BQI4 RPS12P24-201ENST00000412619 387 ntBASIC2.82□□□□□ -1.96
CCDC3Q9BQI4 LINC01312-201ENST00000412745 775 ntTSL 3 BASIC2.82□□□□□ -1.96
CCDC3Q9BQI4 ZNF863P-201ENST00000426746 417 ntBASIC2.82□□□□□ -1.96
CCDC3Q9BQI4 DLGAP5P1-201ENST00000430307 464 ntBASIC2.82□□□□□ -1.96
CCDC3Q9BQI4 AL591704.1-201ENST00000432574 275 ntBASIC2.82□□□□□ -1.96
CCDC3Q9BQI4 AC087499.2-201ENST00000432861 149 ntBASIC2.82□□□□□ -1.96
CCDC3Q9BQI4 AL137789.1-201ENST00000439443 682 ntTSL 3 BASIC2.82□□□□□ -1.96
CCDC3Q9BQI4 AC093579.1-201ENST00000439455 352 ntTSL 2 BASIC2.82□□□□□ -1.96
CCDC3Q9BQI4 RPL37P4-201ENST00000448908 268 ntBASIC2.82□□□□□ -1.96
CCDC3Q9BQI4 RPS3AP17-201ENST00000472594 777 ntBASIC2.82□□□□□ -1.96
CCDC3Q9BQI4 AC023194.1-201ENST00000493084 308 ntBASIC2.82□□□□□ -1.96
CCDC3Q9BQI4 AC026801.1-201ENST00000497178 464 ntBASIC2.82□□□□□ -1.96
CCDC3Q9BQI4 RPL37P25-201ENST00000507308 276 ntBASIC2.82□□□□□ -1.96
CCDC3Q9BQI4 ARL4AP2-201ENST00000507378 601 ntBASIC2.82□□□□□ -1.96
CCDC3Q9BQI4 AC025244.2-201ENST00000509215 422 ntTSL 3 BASIC2.82□□□□□ -1.96
CCDC3Q9BQI4 PANCR-202ENST00000513690 448 ntTSL 2 BASIC2.82□□□□□ -1.96
CCDC3Q9BQI4 RNU6-677P-201ENST00000516914 101 ntBASIC2.82□□□□□ -1.96
CCDC3Q9BQI4 RNU6-1220P-201ENST00000517126 108 ntBASIC2.82□□□□□ -1.96
CCDC3Q9BQI4 RNA5SP380-201ENST00000517190 98 ntBASIC2.82□□□□□ -1.96
CCDC3Q9BQI4 SNORA31.26-201ENST00000517250 137 ntBASIC2.82□□□□□ -1.96
CCDC3Q9BQI4 SMIM18-201ENST00000517349 905 ntAPPRIS P1 TSL 2 BASIC2.82□□□□□ -1.96
CCDC3Q9BQI4 HTN3-202ENST00000526767 578 ntAPPRIS P2 TSL 1 (best) BASIC2.82□□□□□ -1.96
CCDC3Q9BQI4 AP003392.2-201ENST00000527269 208 ntBASIC2.82□□□□□ -1.96
CCDC3Q9BQI4 OR5BN1P-201ENST00000532955 829 ntBASIC2.82□□□□□ -1.96
CCDC3Q9BQI4 AC133480.1-201ENST00000547563 381 ntTSL 3 BASIC2.82□□□□□ -1.96
Retrieved 100 of 98,524 protein–RNA pairs in 80.6 ms