Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 MRPS17P3-201ENST00000465453 385 ntBASIC1.71□□□□□ -2.14
FOXA1P55317 MCCC1-AS1-201ENST00000471731 765 ntTSL 5 BASIC1.71□□□□□ -2.14
FOXA1P55317 AC114786.4-201ENST00000508771 728 ntBASIC1.71□□□□□ -2.14
FOXA1P55317 AC107393.1-201ENST00000512403 346 ntBASIC1.71□□□□□ -2.14
FOXA1P55317 AC098868.1-201ENST00000512628 624 ntTSL 2 BASIC1.71□□□□□ -2.14
FOXA1P55317 MTCYBP43-201ENST00000513621 740 ntBASIC1.71□□□□□ -2.14
FOXA1P55317 AC114797.1-201ENST00000514003 728 ntBASIC1.71□□□□□ -2.14
FOXA1P55317 HSPE1P18-201ENST00000517602 280 ntBASIC1.71□□□□□ -2.14
FOXA1P55317 XIRP2-AS1-201ENST00000525330 776 ntTSL 3 BASIC1.71□□□□□ -2.14
FOXA1P55317 ATP5F1P5-201ENST00000526403 760 ntBASIC1.71□□□□□ -2.14
FOXA1P55317 LINC02386-203ENST00000552182 501 ntTSL 3 BASIC1.71□□□□□ -2.14
FOXA1P55317 AC015712.3-201ENST00000559380 164 ntBASIC1.71□□□□□ -2.14
FOXA1P55317 AC130371.1-204ENST00000576197 401 ntTSL 3 BASIC1.71□□□□□ -2.14
FOXA1P55317 AC106796.1-201ENST00000577173 615 ntTSL 3 BASIC1.71□□□□□ -2.14
FOXA1P55317 AC024614.2-201ENST00000577584 372 ntBASIC1.71□□□□□ -2.14
FOXA1P55317 AC112220.3-201ENST00000605502 502 ntBASIC1.71□□□□□ -2.14
FOXA1P55317 AC106052.1-201ENST00000608029 497 ntBASIC1.71□□□□□ -2.14
FOXA1P55317 AC073052.2-202ENST00000622296 775 ntTSL 5 BASIC1.71□□□□□ -2.14
FOXA1P55317 PCMTD1P7-201ENST00000634506 357 ntBASIC1.71□□□□□ -2.14
FOXA1P55317 AC241585.2-209ENST00000638217 143 ntBASIC1.71□□□□□ -2.14
FOXA1P55317 AL354685.2-201ENST00000448218 1447 ntBASIC1.71□□□□□ -2.14
FOXA1P55317 ZNF29P-201ENST00000225587 168 ntBASIC1.7□□□□□ -2.14
FOXA1P55317 FAM133CP-201ENST00000332869 704 ntBASIC1.7□□□□□ -2.14
FOXA1P55317 RNU6-462P-201ENST00000362659 105 ntBASIC1.7□□□□□ -2.14
FOXA1P55317 RNU6-884P-201ENST00000363889 107 ntBASIC1.7□□□□□ -2.14
FOXA1P55317 AP003170.3-201ENST00000399123 158 ntTSL 5 BASIC1.7□□□□□ -2.14
FOXA1P55317 AL030996.1-201ENST00000411430 235 ntBASIC1.7□□□□□ -2.14
FOXA1P55317 LINC01737-201ENST00000412647 403 ntTSL 1 (best) BASIC1.7□□□□□ -2.14
FOXA1P55317 RPL23AP39-201ENST00000415533 405 ntBASIC1.7□□□□□ -2.14
FOXA1P55317 AC026355.1-201ENST00000423466 587 ntTSL 5 BASIC1.7□□□□□ -2.14
FOXA1P55317 MTCO2P23-201ENST00000425216 680 ntBASIC1.7□□□□□ -2.14
FOXA1P55317 AL360169.1-201ENST00000435116 143 ntTSL 5 BASIC1.7□□□□□ -2.14
FOXA1P55317 AC099063.1-201ENST00000437128 324 ntTSL 5 BASIC1.7□□□□□ -2.14
FOXA1P55317 AL451074.3-201ENST00000437709 472 ntBASIC1.7□□□□□ -2.14
FOXA1P55317 MTND3P1-201ENST00000441336 220 ntBASIC1.7□□□□□ -2.14
FOXA1P55317 COX6CP12-201ENST00000446748 202 ntBASIC1.7□□□□□ -2.14
FOXA1P55317 LINC01474-202ENST00000449235 628 ntTSL 3 BASIC1.7□□□□□ -2.14
FOXA1P55317 AL009048.1-201ENST00000450437 298 ntBASIC1.7□□□□□ -2.14
FOXA1P55317 AC005703.2-201ENST00000453339 343 ntTSL 2 BASIC1.7□□□□□ -2.14
FOXA1P55317 AL359095.1-201ENST00000457383 635 ntTSL 3 BASIC1.7□□□□□ -2.14
FOXA1P55317 RNA5SP233-201ENST00000459153 113 ntBASIC1.7□□□□□ -2.14
FOXA1P55317 C1orf112-206ENST00000472795 925 ntAPPRIS ALT2 TSL 2 BASIC1.7□□□□□ -2.14
FOXA1P55317 AC034222.1-201ENST00000494052 532 ntBASIC1.7□□□□□ -2.14
FOXA1P55317 UBA6-AS1-204ENST00000502758 547 ntTSL 4 BASIC1.7□□□□□ -2.14
FOXA1P55317 AC105252.1-201ENST00000503089 286 ntBASIC1.7□□□□□ -2.14
FOXA1P55317 UBE2V1P12-201ENST00000503954 474 ntBASIC1.7□□□□□ -2.14
FOXA1P55317 LINC02173-201ENST00000504132 521 ntTSL 2 BASIC1.7□□□□□ -2.14
FOXA1P55317 AC008883.2-201ENST00000505796 414 ntTSL 3 BASIC1.7□□□□□ -2.14
FOXA1P55317 AC093809.1-201ENST00000509155 340 ntBASIC1.7□□□□□ -2.14
FOXA1P55317 AC025475.1-201ENST00000512939 487 ntTSL 3 BASIC1.7□□□□□ -2.14
FOXA1P55317 BTF3P12-201ENST00000519620 469 ntBASIC1.7□□□□□ -2.14
FOXA1P55317 AC022634.1-201ENST00000520765 532 ntBASIC1.7□□□□□ -2.14
FOXA1P55317 TMF1P1-201ENST00000576058 373 ntBASIC1.7□□□□□ -2.14
FOXA1P55317 AC131274.4-201ENST00000577879 398 ntTSL 3 BASIC1.7□□□□□ -2.14
FOXA1P55317 MYL12B-204ENST00000584539 1064 ntAPPRIS P1 TSL 3 BASIC1.7□□□□□ -2.14
FOXA1P55317 ABBA01006766.1-201ENST00000584728 294 ntBASIC1.7□□□□□ -2.14
FOXA1P55317 AC104365.1-201ENST00000588835 394 ntTSL 5 BASIC1.7□□□□□ -2.14
FOXA1P55317 AC103710.2-201ENST00000609912 942 ntBASIC1.7□□□□□ -2.14
FOXA1P55317 ST7-OT4_1.1-201ENST00000615322 200 ntBASIC1.7□□□□□ -2.14
FOXA1P55317 AC022306.3-201ENST00000619930 550 ntBASIC1.7□□□□□ -2.14
FOXA1P55317 AC098657.3-201ENST00000620434 263 ntBASIC1.7□□□□□ -2.14
FOXA1P55317 AC112204.3-201ENST00000623822 332 ntBASIC1.7□□□□□ -2.14
FOXA1P55317 PISRT1-201ENST00000626175 531 ntBASIC1.7□□□□□ -2.14
FOXA1P55317 CCT4P2-201ENST00000233836 1548 ntBASIC1.7□□□□□ -2.14
FOXA1P55317 PCF11-AS1-201ENST00000602322 1516 ntBASIC1.7□□□□□ -2.14
FOXA1P55317 AP006437.1-201ENST00000641440 3685 ntBASIC1.7□□□□□ -2.14
FOXA1P55317 CATSPERB-201ENST00000256343 3623 ntAPPRIS P2 TSL 1 (best) BASIC1.7□□□□□ -2.14
FOXA1P55317 PIK3C2G-203ENST00000535651 2497 ntTSL 5 BASIC1.69□□□□□ -2.14
FOXA1P55317 NEDD1-204ENST00000457368 3162 ntTSL 2 BASIC1.69□□□□□ -2.14
FOXA1P55317 OR8K3-204ENST00000641689 2380 ntAPPRIS P1 BASIC1.69□□□□□ -2.14
FOXA1P55317 SNORA38-201ENST00000363946 132 ntBASIC1.69□□□□□ -2.14
FOXA1P55317 SNORA4.1-201ENST00000364263 144 ntBASIC1.69□□□□□ -2.14
FOXA1P55317 RNU6-906P-201ENST00000384700 70 ntBASIC1.69□□□□□ -2.14
FOXA1P55317 AL513475.1-201ENST00000406602 315 ntBASIC1.69□□□□□ -2.14
FOXA1P55317 RN7SKP266-201ENST00000410232 287 ntBASIC1.69□□□□□ -2.14
FOXA1P55317 AC083867.1-201ENST00000413567 457 ntTSL 3 BASIC1.69□□□□□ -2.14
FOXA1P55317 LINC01934-201ENST00000414750 391 ntTSL 3 BASIC1.69□□□□□ -2.14
FOXA1P55317 ELOCP9-201ENST00000418624 239 ntBASIC1.69□□□□□ -2.14
FOXA1P55317 AL645568.3-201ENST00000433683 316 ntBASIC1.69□□□□□ -2.14
FOXA1P55317 AL080284.1-201ENST00000434493 442 ntTSL 2 BASIC1.69□□□□□ -2.14
FOXA1P55317 MTATP6P30-201ENST00000443540 664 ntBASIC1.69□□□□□ -2.14
FOXA1P55317 AC010974.1-201ENST00000450509 374 ntTSL 3 BASIC1.69□□□□□ -2.14
FOXA1P55317 RPL21P99-201ENST00000480369 423 ntBASIC1.69□□□□□ -2.14
FOXA1P55317 AC034226.1-201ENST00000506429 487 ntTSL 2 BASIC1.69□□□□□ -2.14
FOXA1P55317 AC109454.3-201ENST00000512748 669 ntTSL 3 BASIC1.69□□□□□ -2.14
FOXA1P55317 RNA5SP216-201ENST00000516111 123 ntBASIC1.69□□□□□ -2.14
FOXA1P55317 RNU6-390P-201ENST00000516259 103 ntBASIC1.69□□□□□ -2.14
FOXA1P55317 LINC01608-201ENST00000523557 544 ntTSL 4 BASIC1.69□□□□□ -2.14
FOXA1P55317 LINC02384-205ENST00000539404 785 ntTSL 3 BASIC1.69□□□□□ -2.14
FOXA1P55317 AL133153.1-201ENST00000557756 303 ntBASIC1.69□□□□□ -2.14
FOXA1P55317 DEFB122-202ENST00000569013 197 ntBASIC1.69□□□□□ -2.14
FOXA1P55317 AC100778.1-201ENST00000583579 332 ntTSL 3 BASIC1.69□□□□□ -2.14
FOXA1P55317 MIR3616-201ENST00000584070 92 ntBASIC1.69□□□□□ -2.14
FOXA1P55317 ZNF573-209ENST00000585724 453 ntTSL 5 BASIC1.69□□□□□ -2.14
FOXA1P55317 AC021171.1-201ENST00000603137 706 ntBASIC1.69□□□□□ -2.14
FOXA1P55317 AL592221.1-201ENST00000605266 382 ntBASIC1.69□□□□□ -2.14
FOXA1P55317 AL158042.1-201ENST00000605338 460 ntBASIC1.69□□□□□ -2.14
FOXA1P55317 AC008498.1-201ENST00000613012 531 ntBASIC1.69□□□□□ -2.14
FOXA1P55317 AC012150.2-201ENST00000621300 544 ntBASIC1.69□□□□□ -2.14
FOXA1P55317 AC110994.2-201ENST00000635481 492 ntBASIC1.69□□□□□ -2.14
Retrieved 100 of 98,524 protein–RNA pairs in 84.8 ms