Protein–RNA interactions for Protein: P46779

RPL28, 60S ribosomal protein L28, humanhuman

Known RBP Predictions only

Length 137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPL28P46779 DPPA3P3-201ENST00000603842 430 ntBASIC1.29□□□□□ -2.2
RPL28P46779 AC104763.2-201ENST00000604179 382 ntBASIC1.29□□□□□ -2.2
RPL28P46779 AC005034.5-201ENST00000604219 466 ntBASIC1.29□□□□□ -2.2
RPL28P46779 C8orf59-209ENST00000612977 586 ntAPPRIS P1 TSL 2 BASIC1.29□□□□□ -2.2
RPL28P46779 AC022202.1-201ENST00000613515 211 ntBASIC1.29□□□□□ -2.2
RPL28P46779 OR8H2-202ENST00000618136 1038 ntAPPRIS ALT1 BASIC1.29□□□□□ -2.2
RPL28P46779 AC109809.1-201ENST00000619665 545 ntBASIC1.29□□□□□ -2.2
RPL28P46779 MIR219B-201ENST00000637023 88 ntBASIC1.29□□□□□ -2.2
RPL28P46779 LINC01938-201ENST00000521341 1864 ntTSL 2 BASIC1.29□□□□□ -2.2
RPL28P46779 RNA5SP276-201ENST00000362580 94 ntBASIC1.28□□□□□ -2.2
RPL28P46779 SNORA40.2-201ENST00000390847 128 ntBASIC1.28□□□□□ -2.2
RPL28P46779 RNU6ATAC38P-201ENST00000408119 126 ntBASIC1.28□□□□□ -2.2
RPL28P46779 RPL21P24-201ENST00000413752 448 ntBASIC1.28□□□□□ -2.2
RPL28P46779 AC010731.2-201ENST00000415275 440 ntTSL 3 BASIC1.28□□□□□ -2.2
RPL28P46779 AL161909.2-201ENST00000417577 409 ntTSL 5 BASIC1.28□□□□□ -2.2
RPL28P46779 MTND4P3-201ENST00000417829 541 ntBASIC1.28□□□□□ -2.2
RPL28P46779 GS1-594A7.3-201ENST00000421585 574 ntTSL 2 BASIC1.28□□□□□ -2.2
RPL28P46779 AL953862.1-201ENST00000423016 168 ntBASIC1.28□□□□□ -2.2
RPL28P46779 AL157884.2-201ENST00000424177 551 ntTSL 3 BASIC1.28□□□□□ -2.2
RPL28P46779 AL162400.2-201ENST00000427547 157 ntTSL 3 BASIC1.28□□□□□ -2.2
RPL28P46779 AC096638.1-201ENST00000444678 216 ntBASIC1.28□□□□□ -2.2
RPL28P46779 AC006458.1-201ENST00000445093 653 ntTSL 3 BASIC1.28□□□□□ -2.2
RPL28P46779 RPL7P12-201ENST00000446719 750 ntBASIC1.28□□□□□ -2.2
RPL28P46779 AP000431.2-201ENST00000450653 790 ntTSL 2 BASIC1.28□□□□□ -2.2
RPL28P46779 snoU109.1-201ENST00000459339 135 ntBASIC1.28□□□□□ -2.2
RPL28P46779 RPL23AP42-201ENST00000471152 471 ntBASIC1.28□□□□□ -2.2
RPL28P46779 AC069528.1-202ENST00000482888 637 ntBASIC1.28□□□□□ -2.2
RPL28P46779 AC119751.5-201ENST00000514077 770 ntBASIC1.28□□□□□ -2.2
RPL28P46779 SMIM18-201ENST00000517349 905 ntAPPRIS P1 TSL 2 BASIC1.28□□□□□ -2.2
RPL28P46779 HSPE1P18-201ENST00000517602 280 ntBASIC1.28□□□□□ -2.2
RPL28P46779 AC078778.1-201ENST00000547177 735 ntTSL 3 BASIC1.28□□□□□ -2.2
RPL28P46779 AC093012.1-202ENST00000549403 582 ntBASIC1.28□□□□□ -2.2
RPL28P46779 AL133153.1-201ENST00000557756 303 ntBASIC1.28□□□□□ -2.2
RPL28P46779 AL512347.1-201ENST00000566420 503 ntBASIC1.28□□□□□ -2.2
RPL28P46779 MTATP6P2-201ENST00000603319 678 ntBASIC1.28□□□□□ -2.2
RPL28P46779 AC090186.1-201ENST00000605991 572 ntBASIC1.28□□□□□ -2.2
RPL28P46779 AC007038.2-201ENST00000608095 740 ntBASIC1.28□□□□□ -2.2
RPL28P46779 AC010378.1-201ENST00000619270 362 ntBASIC1.28□□□□□ -2.2
RPL28P46779 AC104985.3-201ENST00000623479 597 ntBASIC1.28□□□□□ -2.2
RPL28P46779 MAP4K3-205ENST00000437545 3924 ntTSL 5 BASIC1.28□□□□□ -2.2
RPL28P46779 DDX43P2-201ENST00000604753 1354 ntBASIC1.28□□□□□ -2.2
RPL28P46779 COMMD8-201ENST00000381571 1469 ntAPPRIS P1 TSL 1 (best) BASIC1.28□□□□□ -2.2
RPL28P46779 KTN1-204ENST00000395311 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC1.28□□□□□ -2.2
RPL28P46779 CDC27P3-201ENST00000635418 1910 ntBASIC1.28□□□□□ -2.2
RPL28P46779 SHOC2-201ENST00000265277 3691 ntTSL 2 BASIC1.28□□□□□ -2.21
RPL28P46779 OXR1-209ENST00000517566 4501 ntTSL 1 (best) BASIC1.28□□□□□ -2.21
RPL28P46779 OR8K3-204ENST00000641689 2380 ntAPPRIS P1 BASIC1.27□□□□□ -2.21
RPL28P46779 ATP8A2P3-201ENST00000426792 1536 ntBASIC1.27□□□□□ -2.21
RPL28P46779 SLC10A5P1-201ENST00000379063 1306 ntBASIC1.27□□□□□ -2.21
RPL28P46779 U3.13-201ENST00000364804 214 ntBASIC1.27□□□□□ -2.21
RPL28P46779 XGY1-201ENST00000381172 446 ntBASIC1.27□□□□□ -2.21
RPL28P46779 Y_RNA.578-201ENST00000390903 88 ntBASIC1.27□□□□□ -2.21
RPL28P46779 AL359634.1-202ENST00000404721 284 ntBASIC1.27□□□□□ -2.21
RPL28P46779 CoTC_ribozyme.1-201ENST00000408104 192 ntBASIC1.27□□□□□ -2.21
RPL28P46779 RNU6ATAC37P-201ENST00000408328 131 ntBASIC1.27□□□□□ -2.21
RPL28P46779 AL158840.1-201ENST00000414132 523 ntTSL 3 BASIC1.27□□□□□ -2.21
RPL28P46779 AL592435.1-201ENST00000416401 469 ntTSL 3 BASIC1.27□□□□□ -2.21
RPL28P46779 LURAP1L-AS1-201ENST00000417638 799 ntTSL 3 BASIC1.27□□□□□ -2.21
RPL28P46779 AL353621.1-201ENST00000418219 243 ntBASIC1.27□□□□□ -2.21
RPL28P46779 AL160275.3-201ENST00000423876 471 ntBASIC1.27□□□□□ -2.21
RPL28P46779 AC027124.2-201ENST00000428249 105 ntBASIC1.27□□□□□ -2.21
RPL28P46779 AL035407.1-201ENST00000429211 571 ntBASIC1.27□□□□□ -2.21
RPL28P46779 AL139289.1-201ENST00000436713 731 ntTSL 3 BASIC1.27□□□□□ -2.21
RPL28P46779 AL161788.1-201ENST00000441805 169 ntBASIC1.27□□□□□ -2.21
RPL28P46779 AC010974.1-201ENST00000450509 374 ntTSL 3 BASIC1.27□□□□□ -2.21
RPL28P46779 AC092001.1-201ENST00000453012 261 ntBASIC1.27□□□□□ -2.21
RPL28P46779 PPP1R2P5-201ENST00000457256 603 ntBASIC1.27□□□□□ -2.21
RPL28P46779 CYP2C59P-201ENST00000457790 269 ntBASIC1.27□□□□□ -2.21
RPL28P46779 GUCA1C-203ENST00000471108 633 ntTSL 2 BASIC1.27□□□□□ -2.21
RPL28P46779 RPL36AP48-201ENST00000485521 314 ntBASIC1.27□□□□□ -2.21
RPL28P46779 HMGB3P17-201ENST00000504195 649 ntBASIC1.27□□□□□ -2.21
RPL28P46779 TMEM132D-AS1-202ENST00000510001 293 ntTSL 1 (best) BASIC1.27□□□□□ -2.21
RPL28P46779 AC008892.1-201ENST00000511861 384 ntTSL 3 BASIC1.27□□□□□ -2.21
RPL28P46779 AC104827.1-202ENST00000511917 1049 ntTSL 1 (best) BASIC1.27□□□□□ -2.21
RPL28P46779 SNORA31.3-201ENST00000516029 96 ntBASIC1.27□□□□□ -2.21
RPL28P46779 RNU6-581P-201ENST00000516214 105 ntBASIC1.27□□□□□ -2.21
RPL28P46779 AC026991.1-201ENST00000520815 463 ntTSL 3 BASIC1.27□□□□□ -2.21
RPL28P46779 NARSP2-202ENST00000522022 349 ntTSL 3 BASIC1.27□□□□□ -2.21
RPL28P46779 MTERF3-203ENST00000522822 1148 ntTSL 2 BASIC1.27□□□□□ -2.21
RPL28P46779 DEUP1-203ENST00000527307 767 ntTSL 3 BASIC1.27□□□□□ -2.21
RPL28P46779 AP002884.4-201ENST00000527589 594 ntTSL 3 BASIC1.27□□□□□ -2.21
RPL28P46779 KLRF2-201ENST00000535540 731 ntAPPRIS P1 TSL 1 (best) BASIC1.27□□□□□ -2.21
RPL28P46779 AC079598.5-201ENST00000547460 117 ntBASIC1.27□□□□□ -2.21
RPL28P46779 AC025575.1-201ENST00000548497 544 ntTSL 4 BASIC1.27□□□□□ -2.21
RPL28P46779 LINC02448-201ENST00000548613 583 ntTSL 2 BASIC1.27□□□□□ -2.21
RPL28P46779 MRPL42-208ENST00000552217 920 ntAPPRIS P2 TSL 2 BASIC1.27□□□□□ -2.21
RPL28P46779 AC026474.1-201ENST00000562422 428 ntTSL 2 BASIC1.27□□□□□ -2.21
RPL28P46779 AC012213.3-201ENST00000577199 777 ntBASIC1.27□□□□□ -2.21
RPL28P46779 MIR4513-201ENST00000581077 86 ntBASIC1.27□□□□□ -2.21
RPL28P46779 AP001029.2-202ENST00000588197 739 ntTSL 3 BASIC1.27□□□□□ -2.21
RPL28P46779 AL031274.2-201ENST00000599419 203 ntBASIC1.27□□□□□ -2.21
RPL28P46779 OR5H6-201ENST00000615035 1113 ntAPPRIS P1 BASIC1.27□□□□□ -2.21
RPL28P46779 OR1S1-201ENST00000624470 978 ntBASIC1.27□□□□□ -2.21
RPL28P46779 AC097655.1-201ENST00000635075 318 ntBASIC1.27□□□□□ -2.21
RPL28P46779 AC103710.2-202ENST00000641454 2853 ntBASIC1.27□□□□□ -2.21
RPL28P46779 TBL1XR1-208ENST00000430069 7948 ntAPPRIS P1 TSL 1 (best) BASIC1.26□□□□□ -2.21
RPL28P46779 ST7-AS2-206ENST00000456577 1351 ntTSL 1 (best) BASIC1.26□□□□□ -2.21
RPL28P46779 UBE2L2-201ENST00000254302 429 ntBASIC1.26□□□□□ -2.21
RPL28P46779 RNU4-51P-201ENST00000364206 140 ntBASIC1.26□□□□□ -2.21
RPL28P46779 RNU6-188P-201ENST00000364207 107 ntBASIC1.26□□□□□ -2.21
Retrieved 100 of 98,524 protein–RNA pairs in 97.5 ms