Protein–RNA interactions for Protein: P31431

SDC4, Syndecan-4, humanhuman

Predictions only

Length 198 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC4P31431 AC008379.1-201ENST00000463655 464 ntBASIC1.21□□□□□ -2.22
SDC4P31431 UBA6-AS1-204ENST00000502758 547 ntTSL 4 BASIC1.21□□□□□ -2.22
SDC4P31431 SNORA4.4-201ENST00000515921 135 ntBASIC1.21□□□□□ -2.22
SDC4P31431 RNU6-362P-201ENST00000516736 90 ntBASIC1.21□□□□□ -2.22
SDC4P31431 AF117829.1-204ENST00000519854 284 ntTSL 3 BASIC1.21□□□□□ -2.22
SDC4P31431 AP003066.2-201ENST00000529375 555 ntBASIC1.21□□□□□ -2.22
SDC4P31431 AC004943.1-202ENST00000558618 503 ntTSL 3 BASIC1.21□□□□□ -2.22
SDC4P31431 AC005154.1-222ENST00000579024 341 ntTSL 5 BASIC1.21□□□□□ -2.22
SDC4P31431 AC092070.1-201ENST00000600257 359 ntTSL 3 BASIC1.21□□□□□ -2.22
SDC4P31431 AP003973.1-201ENST00000604639 691 ntBASIC1.21□□□□□ -2.22
SDC4P31431 snoU13.31-201ENST00000607291 104 ntBASIC1.21□□□□□ -2.22
SDC4P31431 AC092142.2-201ENST00000614642 354 ntTSL 3 BASIC1.21□□□□□ -2.22
SDC4P31431 AC073569.3-201ENST00000619055 682 ntBASIC1.21□□□□□ -2.22
SDC4P31431 AL445493.3-201ENST00000619568 477 ntBASIC1.21□□□□□ -2.22
SDC4P31431 PTP4A2-219ENST00000626355 606 ntTSL 5 BASIC1.21□□□□□ -2.22
SDC4P31431 NDUFS5P4-201ENST00000412983 318 ntBASIC1.2□□□□□ -2.22
SDC4P31431 AL591704.2-201ENST00000421658 181 ntBASIC1.2□□□□□ -2.22
SDC4P31431 EIF4EP2-201ENST00000422816 654 ntBASIC1.2□□□□□ -2.22
SDC4P31431 LINC01626-201ENST00000431997 452 ntTSL 3 BASIC1.2□□□□□ -2.22
SDC4P31431 AL357140.2-201ENST00000445884 440 ntTSL 3 BASIC1.2□□□□□ -2.22
SDC4P31431 AL929288.2-201ENST00000446368 407 ntBASIC1.2□□□□□ -2.22
SDC4P31431 NDUFA5P7-201ENST00000452914 242 ntBASIC1.2□□□□□ -2.22
SDC4P31431 AL353780.1-201ENST00000455583 458 ntTSL 2 BASIC1.2□□□□□ -2.22
SDC4P31431 LINC01198-202ENST00000458282 558 ntTSL 5 BASIC1.2□□□□□ -2.22
SDC4P31431 AL163540.1-201ENST00000485382 386 ntBASIC1.2□□□□□ -2.22
SDC4P31431 SNORA44.1-201ENST00000517031 108 ntBASIC1.2□□□□□ -2.22
SDC4P31431 RNA5SP165-201ENST00000517142 115 ntBASIC1.2□□□□□ -2.22
SDC4P31431 ZNF436-AS1-205ENST00000518600 376 ntTSL 5 BASIC1.2□□□□□ -2.22
SDC4P31431 AC113423.1-201ENST00000523279 289 ntTSL 3 BASIC1.2□□□□□ -2.22
SDC4P31431 AC124293.1-201ENST00000530034 493 ntBASIC1.2□□□□□ -2.22
SDC4P31431 LINC02562-201ENST00000561705 785 ntTSL 2 BASIC1.2□□□□□ -2.22
SDC4P31431 ST20-203ENST00000562759 694 ntAPPRIS P1 TSL 2 BASIC1.2□□□□□ -2.22
SDC4P31431 AP001485.1-201ENST00000604799 199 ntBASIC1.2□□□□□ -2.22
SDC4P31431 AC018638.7-201ENST00000605836 1114 ntBASIC1.2□□□□□ -2.22
SDC4P31431 AC023490.1-201ENST00000614584 375 ntTSL 2 BASIC1.2□□□□□ -2.22
SDC4P31431 AC011718.1-201ENST00000622906 375 ntTSL 1 (best) BASIC1.2□□□□□ -2.22
SDC4P31431 MIR4275-201ENST00000636486 87 ntBASIC1.2□□□□□ -2.22
SDC4P31431 ATM-230ENST00000640388 578 ntTSL 5 BASIC1.2□□□□□ -2.22
SDC4P31431 ZNF849P-201ENST00000594711 1566 ntBASIC1.2□□□□□ -2.22
SDC4P31431 CUL3-203ENST00000409096 2701 ntTSL 1 (best) BASIC1.19□□□□□ -2.22
SDC4P31431 ASB17-201ENST00000284142 1107 ntAPPRIS P1 TSL 1 (best) BASIC1.19□□□□□ -2.22
SDC4P31431 RNU6-619P-201ENST00000365146 108 ntBASIC1.19□□□□□ -2.22
SDC4P31431 AC005104.1-201ENST00000414896 442 ntTSL 3 BASIC1.19□□□□□ -2.22
SDC4P31431 OR51A5P-201ENST00000415429 942 ntBASIC1.19□□□□□ -2.22
SDC4P31431 AC114808.2-201ENST00000428335 536 ntTSL 4 BASIC1.19□□□□□ -2.22
SDC4P31431 SNRPFP4-201ENST00000456366 242 ntBASIC1.19□□□□□ -2.22
SDC4P31431 RNA5SP57-201ENST00000459463 123 ntBASIC1.19□□□□□ -2.22
SDC4P31431 AC117503.1-201ENST00000472241 394 ntBASIC1.19□□□□□ -2.22
SDC4P31431 AC093852.1-201ENST00000503587 266 ntBASIC1.19□□□□□ -2.22
SDC4P31431 LINC02494-201ENST00000509824 427 ntTSL 3 BASIC1.19□□□□□ -2.22
SDC4P31431 RNU6-760P-201ENST00000516078 97 ntBASIC1.19□□□□□ -2.22
SDC4P31431 TRIQK-209ENST00000519969 555 ntAPPRIS P1 TSL 4 BASIC1.19□□□□□ -2.22
SDC4P31431 AC008127.2-201ENST00000549925 1075 ntBASIC1.19□□□□□ -2.22
SDC4P31431 NACAP3-201ENST00000552100 481 ntBASIC1.19□□□□□ -2.22
SDC4P31431 LINC02316-201ENST00000553346 768 ntTSL 3 BASIC1.19□□□□□ -2.22
SDC4P31431 JKAMP-212ENST00000556985 592 ntTSL 2 BASIC1.19□□□□□ -2.22
SDC4P31431 ZRANB2-AS2-212ENST00000590186 686 ntTSL 5 BASIC1.19□□□□□ -2.22
SDC4P31431 DUXAP11-201ENST00000603858 526 ntBASIC1.19□□□□□ -2.22
SDC4P31431 RNF219-AS1-205ENST00000605996 792 ntTSL 5 BASIC1.19□□□□□ -2.22
SDC4P31431 AC004067.1-201ENST00000608733 700 ntBASIC1.19□□□□□ -2.22
SDC4P31431 MIR5739-201ENST00000619803 80 ntBASIC1.19□□□□□ -2.22
SDC4P31431 MTND1P37-201ENST00000636562 264 ntBASIC1.19□□□□□ -2.22
SDC4P31431 OR4C15-202ENST00000642128 951 ntAPPRIS P1 BASIC1.19□□□□□ -2.22
SDC4P31431 SKIL-202ENST00000413427 2702 ntTSL 1 (best) BASIC1.18□□□□□ -2.22
SDC4P31431 ZNF29P-201ENST00000225587 168 ntBASIC1.18□□□□□ -2.22
SDC4P31431 RNU1-57P-201ENST00000384491 166 ntBASIC1.18□□□□□ -2.22
SDC4P31431 RNU2-41P-201ENST00000410991 178 ntBASIC1.18□□□□□ -2.22
SDC4P31431 PPP1R11P2-201ENST00000423543 382 ntBASIC1.18□□□□□ -2.22
SDC4P31431 FAM204CP-201ENST00000424489 642 ntBASIC1.18□□□□□ -2.22
SDC4P31431 FAR2P3-204ENST00000434661 444 ntTSL 2 BASIC1.18□□□□□ -2.22
SDC4P31431 RSU1P2-202ENST00000437884 485 ntBASIC1.18□□□□□ -2.22
SDC4P31431 AC092393.1-201ENST00000439625 742 ntBASIC1.18□□□□□ -2.22
SDC4P31431 AC004485.1-201ENST00000439839 527 ntTSL 5 BASIC1.18□□□□□ -2.22
SDC4P31431 AL021393.1-201ENST00000456740 539 ntTSL 5 BASIC1.18□□□□□ -2.22
SDC4P31431 CYP2C59P-201ENST00000457790 269 ntBASIC1.18□□□□□ -2.22
SDC4P31431 AL354824.2-201ENST00000458004 446 ntTSL 3 BASIC1.18□□□□□ -2.22
SDC4P31431 AP004247.1-201ENST00000531556 1289 ntBASIC1.18□□□□□ -2.22
SDC4P31431 CARD18-203ENST00000532895 422 ntTSL 2 BASIC1.18□□□□□ -2.22
SDC4P31431 IMMP1LP2-201ENST00000552954 492 ntBASIC1.18□□□□□ -2.22
SDC4P31431 AP001496.1-201ENST00000579113 471 ntTSL 4 BASIC1.18□□□□□ -2.22
SDC4P31431 AL050343.2-201ENST00000607338 280 ntBASIC1.18□□□□□ -2.22
SDC4P31431 AC083798.2-205ENST00000608015 575 ntTSL 5 BASIC1.18□□□□□ -2.22
SDC4P31431 AC012360.2-201ENST00000609349 391 ntBASIC1.18□□□□□ -2.22
SDC4P31431 AC096586.1-201ENST00000610267 561 ntBASIC1.18□□□□□ -2.22
SDC4P31431 LMBRD1-201ENST00000370570 2099 ntTSL 1 (best) BASIC1.18□□□□□ -2.22
SDC4P31431 SGO1P1-201ENST00000603525 1447 ntBASIC1.17□□□□□ -2.22
SDC4P31431 MIR424-201ENST00000362227 98 ntBASIC1.17□□□□□ -2.22
SDC4P31431 MIR1285-1-201ENST00000408593 84 ntBASIC1.17□□□□□ -2.22
SDC4P31431 Y_RNA.595-201ENST00000410403 105 ntBASIC1.17□□□□□ -2.22
SDC4P31431 RPS12P24-201ENST00000412619 387 ntBASIC1.17□□□□□ -2.22
SDC4P31431 AL158840.1-201ENST00000414132 523 ntTSL 3 BASIC1.17□□□□□ -2.22
SDC4P31431 UBE2FP1-201ENST00000416536 447 ntBASIC1.17□□□□□ -2.22
SDC4P31431 Z82205.1-201ENST00000428456 297 ntBASIC1.17□□□□□ -2.22
SDC4P31431 AC023128.1-201ENST00000432431 799 ntTSL 3 BASIC1.17□□□□□ -2.22
SDC4P31431 AL163192.1-201ENST00000448858 708 ntTSL 5 BASIC1.17□□□□□ -2.22
SDC4P31431 ITGA9-AS1-208ENST00000449586 726 ntTSL 3 BASIC1.17□□□□□ -2.22
SDC4P31431 HMGN2P18-201ENST00000450680 270 ntBASIC1.17□□□□□ -2.22
SDC4P31431 NAALADL2-AS3-202ENST00000453180 413 ntTSL 3 BASIC1.17□□□□□ -2.22
SDC4P31431 LINC00374-201ENST00000454780 800 ntTSL 3 BASIC1.17□□□□□ -2.22
SDC4P31431 RPS27AP10-201ENST00000496103 208 ntBASIC1.17□□□□□ -2.22
Retrieved 100 of 98,524 protein–RNA pairs in 103.1 ms