Protein–RNA interactions for Protein: P31274

HOXC9, Homeobox protein Hox-C9, humanhuman

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9P31274 AL359757.2-201ENST00000624309 274 ntBASIC3.32□□□□□ -1.88
HOXC9P31274 WARS-244ENST00000627608 123 ntTSL 5 BASIC3.32□□□□□ -1.88
HOXC9P31274 SATB1-AS1-269ENST00000630766 591 ntTSL 5 BASIC3.32□□□□□ -1.88
HOXC9P31274 OR5AK4P-201ENST00000635912 903 ntBASIC3.32□□□□□ -1.88
HOXC9P31274 SENP7-204ENST00000394085 1483 ntTSL 1 (best) BASIC3.32□□□□□ -1.88
HOXC9P31274 MTND5P26-201ENST00000426018 1752 ntBASIC3.32□□□□□ -1.88
HOXC9P31274 STAU2-207ENST00000519961 3928 ntTSL 1 (best) BASIC3.31□□□□□ -1.88
HOXC9P31274 Y_RNA.3-201ENST00000362331 103 ntBASIC3.31□□□□□ -1.88
HOXC9P31274 RN7SKP226-201ENST00000364912 300 ntBASIC3.31□□□□□ -1.88
HOXC9P31274 RNA5SP210-201ENST00000391034 120 ntBASIC3.31□□□□□ -1.88
HOXC9P31274 RN7SKP223-201ENST00000410582 62 ntBASIC3.31□□□□□ -1.88
HOXC9P31274 AC004014.1-201ENST00000413406 538 ntTSL 4 BASIC3.31□□□□□ -1.88
HOXC9P31274 AL590783.1-201ENST00000424138 456 ntTSL 2 BASIC3.31□□□□□ -1.88
HOXC9P31274 USP12PX-201ENST00000432383 1057 ntBASIC3.31□□□□□ -1.88
HOXC9P31274 AL451074.3-201ENST00000437709 472 ntBASIC3.31□□□□□ -1.88
HOXC9P31274 NHS-AS1-201ENST00000452788 366 ntTSL 3 BASIC3.31□□□□□ -1.88
HOXC9P31274 RPS23P3-201ENST00000470993 430 ntBASIC3.31□□□□□ -1.88
HOXC9P31274 AL049830.2-201ENST00000480072 201 ntBASIC3.31□□□□□ -1.88
HOXC9P31274 RPL37P25-201ENST00000507308 276 ntBASIC3.31□□□□□ -1.88
HOXC9P31274 AC097460.1-201ENST00000514624 590 ntTSL 3 BASIC3.31□□□□□ -1.88
HOXC9P31274 RNU2-10P-201ENST00000516375 211 ntBASIC3.31□□□□□ -1.88
HOXC9P31274 HMGB1P41-201ENST00000520234 440 ntBASIC3.31□□□□□ -1.88
HOXC9P31274 CKS1BP7-201ENST00000522230 235 ntBASIC3.31□□□□□ -1.88
HOXC9P31274 LINC02328-203ENST00000557195 682 ntTSL 3 BASIC3.31□□□□□ -1.88
HOXC9P31274 AL845331.3-202ENST00000562856 261 ntBASIC3.31□□□□□ -1.88
HOXC9P31274 AC012186.2-201ENST00000569353 321 ntTSL 3 BASIC3.31□□□□□ -1.88
HOXC9P31274 AC005951.1-201ENST00000576706 485 ntBASIC3.31□□□□□ -1.88
HOXC9P31274 AC007938.3-201ENST00000604965 623 ntBASIC3.31□□□□□ -1.88
HOXC9P31274 AC091965.1-202ENST00000607662 397 ntTSL 3 BASIC3.31□□□□□ -1.88
HOXC9P31274 LINC00310-205ENST00000609062 863 ntTSL 5 BASIC3.31□□□□□ -1.88
HOXC9P31274 AC122108.2-201ENST00000611946 526 ntBASIC3.31□□□□□ -1.88
HOXC9P31274 AC013476.2-201ENST00000614456 459 ntBASIC3.31□□□□□ -1.88
HOXC9P31274 ANKRD18EP-201ENST00000405487 2632 ntBASIC3.31□□□□□ -1.88
HOXC9P31274 C5orf51-201ENST00000381647 5241 ntAPPRIS P1 TSL 1 (best) BASIC3.3□□□□□ -1.88
HOXC9P31274 GNAI3-201ENST00000369851 27174 ntAPPRIS P1 TSL 1 (best) BASIC3.3□□□□□ -1.88
HOXC9P31274 GYPA-201ENST00000324022 751 ntAPPRIS ALT2 TSL 1 (best) BASIC3.3□□□□□ -1.88
HOXC9P31274 RNU6-181P-201ENST00000363225 107 ntBASIC3.3□□□□□ -1.88
HOXC9P31274 RNU6-1284P-201ENST00000363701 100 ntBASIC3.3□□□□□ -1.88
HOXC9P31274 RNU6-188P-201ENST00000364207 107 ntBASIC3.3□□□□□ -1.88
HOXC9P31274 RNU6-169P-201ENST00000365336 107 ntBASIC3.3□□□□□ -1.88
HOXC9P31274 TRDJ1-201ENST00000390473 51 ntAPPRIS P1 BASIC3.3□□□□□ -1.88
HOXC9P31274 RN7SKP140-201ENST00000411196 284 ntBASIC3.3□□□□□ -1.88
HOXC9P31274 AC093157.2-201ENST00000414686 671 ntTSL 5 BASIC3.3□□□□□ -1.88
HOXC9P31274 TRAPPC2P4-201ENST00000421750 331 ntBASIC3.3□□□□□ -1.88
HOXC9P31274 PCDH9-AS1-201ENST00000430861 532 ntTSL 2 BASIC3.3□□□□□ -1.88
HOXC9P31274 RPL23AP30-201ENST00000432419 501 ntBASIC3.3□□□□□ -1.88
HOXC9P31274 HIGD1AP2-201ENST00000446367 280 ntBASIC3.3□□□□□ -1.88
HOXC9P31274 GAS5-221ENST00000450589 632 ntTSL 1 (best) BASIC3.3□□□□□ -1.88
HOXC9P31274 ANKRD7-204ENST00000477532 744 ntTSL 5 BASIC3.3□□□□□ -1.88
HOXC9P31274 AC099520.1-202ENST00000503650 777 ntTSL 3 BASIC3.3□□□□□ -1.88
HOXC9P31274 RPS3A-208ENST00000509736 576 ntTSL 2 BASIC3.3□□□□□ -1.88
HOXC9P31274 AC079160.1-201ENST00000513489 739 ntTSL 1 (best) BASIC3.3□□□□□ -1.88
HOXC9P31274 RNU6-720P-201ENST00000516363 108 ntBASIC3.3□□□□□ -1.88
HOXC9P31274 RNU6-1256P-201ENST00000516539 103 ntBASIC3.3□□□□□ -1.88
HOXC9P31274 RNU7-51P-201ENST00000516560 62 ntBASIC3.3□□□□□ -1.88
HOXC9P31274 RNU6-445P-201ENST00000516949 107 ntBASIC3.3□□□□□ -1.88
HOXC9P31274 AC021736.1-201ENST00000521143 563 ntTSL 4 BASIC3.3□□□□□ -1.88
HOXC9P31274 MAL2-206ENST00000522187 547 ntTSL 4 BASIC3.3□□□□□ -1.88
HOXC9P31274 MGST1-215ENST00000540056 546 ntTSL 3 BASIC3.3□□□□□ -1.88
HOXC9P31274 AC008083.1-201ENST00000547748 663 ntTSL 2 BASIC3.3□□□□□ -1.88
HOXC9P31274 MIR3921-201ENST00000577308 85 ntBASIC3.3□□□□□ -1.88
HOXC9P31274 AP005062.1-201ENST00000581502 607 ntTSL 3 BASIC3.3□□□□□ -1.88
HOXC9P31274 GLUD1P4-201ENST00000590914 418 ntBASIC3.3□□□□□ -1.88
HOXC9P31274 LINC01515-204ENST00000595269 402 ntTSL 5 BASIC3.3□□□□□ -1.88
HOXC9P31274 AC103810.6-201ENST00000606708 136 ntBASIC3.3□□□□□ -1.88
HOXC9P31274 HOTAIRM1_2.1-201ENST00000616712 215 ntBASIC3.3□□□□□ -1.88
HOXC9P31274 AL589994.2-201ENST00000621124 579 ntBASIC3.3□□□□□ -1.88
HOXC9P31274 AC008781.3-201ENST00000622826 335 ntTSL 2 BASIC3.3□□□□□ -1.88
HOXC9P31274 AP003481.1-201ENST00000637808 351 ntTSL 5 BASIC3.3□□□□□ -1.88
HOXC9P31274 AC093725.1-201ENST00000508135 2672 ntTSL 5 BASIC3.3□□□□□ -1.88
HOXC9P31274 AL050331.3-201ENST00000448740 2081 ntTSL 2 BASIC3.29□□□□□ -1.88
HOXC9P31274 HDX-202ENST00000373177 2924 ntAPPRIS P1 TSL 1 (best) BASIC3.29□□□□□ -1.88
HOXC9P31274 RNA5SP456-201ENST00000364002 114 ntBASIC3.29□□□□□ -1.88
HOXC9P31274 RNU6-701P-201ENST00000384059 107 ntBASIC3.29□□□□□ -1.88
HOXC9P31274 RNU6-456P-201ENST00000384493 107 ntBASIC3.29□□□□□ -1.88
HOXC9P31274 NDUFS5P1-201ENST00000405668 289 ntBASIC3.29□□□□□ -1.88
HOXC9P31274 GSTA9P-201ENST00000406231 611 ntBASIC3.29□□□□□ -1.88
HOXC9P31274 RN7SKP192-201ENST00000411291 327 ntBASIC3.29□□□□□ -1.88
HOXC9P31274 AL162400.2-201ENST00000427547 157 ntTSL 3 BASIC3.29□□□□□ -1.88
HOXC9P31274 ARF4P2-201ENST00000430209 526 ntBASIC3.29□□□□□ -1.88
HOXC9P31274 HMGN2P20-201ENST00000437531 273 ntBASIC3.29□□□□□ -1.88
HOXC9P31274 MACC1-AS1-201ENST00000439285 639 ntTSL 3 BASIC3.29□□□□□ -1.88
HOXC9P31274 SSXP4-201ENST00000451349 245 ntBASIC3.29□□□□□ -1.88
HOXC9P31274 AC011998.3-201ENST00000457053 254 ntTSL 3 BASIC3.29□□□□□ -1.88
HOXC9P31274 RPS20P20-201ENST00000460498 340 ntBASIC3.29□□□□□ -1.88
HOXC9P31274 RPL23AP45-201ENST00000476406 468 ntBASIC3.29□□□□□ -1.88
HOXC9P31274 AC012181.1-201ENST00000479895 423 ntBASIC3.29□□□□□ -1.88
HOXC9P31274 AC107401.1-201ENST00000503426 685 ntBASIC3.29□□□□□ -1.88
HOXC9P31274 AC010493.1-201ENST00000513479 292 ntBASIC3.29□□□□□ -1.88
HOXC9P31274 AC108727.1-201ENST00000513802 393 ntTSL 2 BASIC3.29□□□□□ -1.88
HOXC9P31274 SCARNA24.1-201ENST00000516465 137 ntBASIC3.29□□□□□ -1.88
HOXC9P31274 AC092747.1-201ENST00000538920 351 ntTSL 5 BASIC3.29□□□□□ -1.88
HOXC9P31274 AL445074.1-201ENST00000555362 318 ntTSL 2 BASIC3.29□□□□□ -1.88
HOXC9P31274 SUB1P2-201ENST00000556401 297 ntBASIC3.29□□□□□ -1.88
HOXC9P31274 RPL23AP84-201ENST00000571193 464 ntBASIC3.29□□□□□ -1.88
HOXC9P31274 Z84480.1-201ENST00000605131 311 ntBASIC3.29□□□□□ -1.88
HOXC9P31274 AC068506.1-202ENST00000613388 545 ntTSL 3 BASIC3.29□□□□□ -1.88
HOXC9P31274 5S_rRNA.12-201ENST00000617631 107 ntBASIC3.29□□□□□ -1.88
HOXC9P31274 AL158209.2-201ENST00000619266 216 ntBASIC3.29□□□□□ -1.88
HOXC9P31274 AC136475.10-201ENST00000620253 385 ntBASIC3.29□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 102.8 ms