Protein–RNA interactions for Protein: P12109

COL6A1, Collagen alpha-1(VI) chain, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1P12109 SNORD35B-201ENST00000363660 87 ntBASIC4.34□□□□□ -1.71
COL6A1P12109 RNA5SP51-201ENST00000364750 119 ntBASIC4.34□□□□□ -1.71
COL6A1P12109 SNORD116-11-201ENST00000383882 92 ntBASIC4.34□□□□□ -1.71
COL6A1P12109 MTHFD2P2-201ENST00000407725 247 ntBASIC4.34□□□□□ -1.71
COL6A1P12109 AF241725.1-201ENST00000416182 480 ntTSL 3 BASIC4.34□□□□□ -1.71
COL6A1P12109 RPL31P12-201ENST00000422587 358 ntBASIC4.34□□□□□ -1.71
COL6A1P12109 RAC1P6-201ENST00000423911 575 ntBASIC4.34□□□□□ -1.71
COL6A1P12109 MTCYBP10-201ENST00000424905 650 ntBASIC4.34□□□□□ -1.71
COL6A1P12109 AC017083.1-201ENST00000428093 483 ntBASIC4.34□□□□□ -1.71
COL6A1P12109 AC093581.1-202ENST00000430890 391 ntTSL 2 BASIC4.34□□□□□ -1.71
COL6A1P12109 SNRPEP4-201ENST00000435815 279 ntBASIC4.34□□□□□ -1.71
COL6A1P12109 SFTA1P-203ENST00000446372 693 ntTSL 1 (best) BASIC4.34□□□□□ -1.71
COL6A1P12109 BTF3P15-201ENST00000455606 336 ntBASIC4.34□□□□□ -1.71
COL6A1P12109 AC079140.5-201ENST00000507882 310 ntBASIC4.34□□□□□ -1.71
COL6A1P12109 IL7R-208ENST00000511982 612 ntTSL 2 BASIC4.34□□□□□ -1.71
COL6A1P12109 AC004054.1-201ENST00000515111 270 ntTSL 3 BASIC4.34□□□□□ -1.71
COL6A1P12109 RN7SKP295-201ENST00000517264 153 ntBASIC4.34□□□□□ -1.71
COL6A1P12109 AC103783.1-201ENST00000520506 373 ntBASIC4.34□□□□□ -1.71
COL6A1P12109 AC096558.2-201ENST00000546678 506 ntTSL 3 BASIC4.34□□□□□ -1.71
COL6A1P12109 LINC01735-201ENST00000568112 279 ntTSL 3 BASIC4.34□□□□□ -1.71
COL6A1P12109 AC124312.5-201ENST00000604451 268 ntBASIC4.34□□□□□ -1.71
COL6A1P12109 AC012409.4-201ENST00000612923 249 ntBASIC4.34□□□□□ -1.71
COL6A1P12109 AC083806.3-201ENST00000614016 455 ntBASIC4.34□□□□□ -1.71
COL6A1P12109 SNHG22-203ENST00000617833 660 ntBASIC4.34□□□□□ -1.71
COL6A1P12109 ADGRG2-205ENST00000357991 4661 ntAPPRIS P3 TSL 1 (best) BASIC4.34□□□□□ -1.71
COL6A1P12109 AL049641.1-201ENST00000441055 1948 ntBASIC4.33□□□□□ -1.72
COL6A1P12109 IGSF11-AS1-201ENST00000477009 1604 ntTSL 2 BASIC4.33□□□□□ -1.72
COL6A1P12109 TRAJ17-201ENST00000390520 63 ntAPPRIS P1 BASIC4.33□□□□□ -1.72
COL6A1P12109 TRAJ16-201ENST00000390521 60 ntAPPRIS P1 BASIC4.33□□□□□ -1.72
COL6A1P12109 SNORA48.2-201ENST00000390926 124 ntBASIC4.33□□□□□ -1.72
COL6A1P12109 RNA5SP219-201ENST00000390940 113 ntBASIC4.33□□□□□ -1.72
COL6A1P12109 RNU2-47P-201ENST00000410649 186 ntBASIC4.33□□□□□ -1.72
COL6A1P12109 UBE2FP1-201ENST00000416536 447 ntBASIC4.33□□□□□ -1.72
COL6A1P12109 SKA2P1-201ENST00000425592 390 ntBASIC4.33□□□□□ -1.72
COL6A1P12109 RPL21P23-201ENST00000446654 460 ntBASIC4.33□□□□□ -1.72
COL6A1P12109 AC067945.3-201ENST00000456176 386 ntTSL 5 BASIC4.33□□□□□ -1.72
COL6A1P12109 AL135752.1-201ENST00000479477 471 ntBASIC4.33□□□□□ -1.72
COL6A1P12109 AC010280.1-201ENST00000515199 340 ntTSL 2 BASIC4.33□□□□□ -1.72
COL6A1P12109 RNU4ATAC7P-201ENST00000516280 125 ntBASIC4.33□□□□□ -1.72
COL6A1P12109 SNORA31.8-201ENST00000516327 108 ntBASIC4.33□□□□□ -1.72
COL6A1P12109 AC136777.1-201ENST00000517765 369 ntTSL 4 BASIC4.33□□□□□ -1.72
COL6A1P12109 AC023866.1-201ENST00000518064 579 ntTSL 4 BASIC4.33□□□□□ -1.72
COL6A1P12109 AC113192.4-201ENST00000534666 547 ntTSL 4 BASIC4.33□□□□□ -1.72
COL6A1P12109 LINC01479-202ENST00000546170 444 ntTSL 2 BASIC4.33□□□□□ -1.72
COL6A1P12109 CR383656.7-201ENST00000548164 174 ntBASIC4.33□□□□□ -1.72
COL6A1P12109 MEG8-215ENST00000555354 469 ntTSL 3 BASIC4.33□□□□□ -1.72
COL6A1P12109 AC009292.2-201ENST00000558889 291 ntTSL 5 BASIC4.33□□□□□ -1.72
COL6A1P12109 LINC01897-203ENST00000591503 369 ntTSL 2 BASIC4.33□□□□□ -1.72
COL6A1P12109 AL589765.7-201ENST00000601684 629 ntTSL 3 BASIC4.33□□□□□ -1.72
COL6A1P12109 7SK.7-201ENST00000603504 247 ntBASIC4.33□□□□□ -1.72
COL6A1P12109 AL138889.2-201ENST00000603883 242 ntBASIC4.33□□□□□ -1.72
COL6A1P12109 RNU1-30P-201ENST00000606575 163 ntBASIC4.33□□□□□ -1.72
COL6A1P12109 AC015813.4-201ENST00000610469 179 ntBASIC4.33□□□□□ -1.72
COL6A1P12109 U2.17-201ENST00000611454 95 ntBASIC4.33□□□□□ -1.72
COL6A1P12109 AC064801.1-201ENST00000612025 407 ntBASIC4.33□□□□□ -1.72
COL6A1P12109 MIR8058-201ENST00000615737 89 ntBASIC4.33□□□□□ -1.72
COL6A1P12109 AC010378.1-201ENST00000619270 362 ntBASIC4.33□□□□□ -1.72
COL6A1P12109 TTK-211ENST00000627129 240 ntTSL 5 BASIC4.33□□□□□ -1.72
COL6A1P12109 CFTR-201ENST00000003084 6132 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
COL6A1P12109 MARCH1-201ENST00000274056 5367 ntAPPRIS P1 TSL 4 BASIC4.33□□□□□ -1.72
COL6A1P12109 KIAA1841-211ENST00000612149 4202 ntTSL 5 BASIC4.33□□□□□ -1.72
COL6A1P12109 DOCK7-201ENST00000251157 7084 ntAPPRIS ALT2 TSL 5 BASIC4.33□□□□□ -1.72
COL6A1P12109 RAPGEF6-201ENST00000296859 5618 ntAPPRIS ALT2 TSL 1 (best) BASIC4.32□□□□□ -1.72
COL6A1P12109 ARHGAP28-202ENST00000314319 5415 ntAPPRIS P2 TSL 5 BASIC4.32□□□□□ -1.72
COL6A1P12109 SUCNR1-201ENST00000362032 4181 ntAPPRIS P1 TSL 1 (best) BASIC4.32□□□□□ -1.72
COL6A1P12109 DMXL2-202ENST00000449909 7465 ntAPPRIS ALT2 TSL 1 (best) BASIC4.32□□□□□ -1.72
COL6A1P12109 EIF2AK2-204ENST00000405334 1533 ntTSL 1 (best) BASIC4.32□□□□□ -1.72
COL6A1P12109 CNOT1-201ENST00000317147 8471 ntAPPRIS P3 TSL 1 (best) BASIC4.32□□□□□ -1.72
COL6A1P12109 MTND4P1-201ENST00000457501 1466 ntBASIC4.32□□□□□ -1.72
COL6A1P12109 PLCB1-233ENST00000637919 5074 ntTSL 5 BASIC4.32□□□□□ -1.72
COL6A1P12109 AIF1-202ENST00000376049 524 ntTSL 1 (best) BASIC4.32□□□□□ -1.72
COL6A1P12109 RNU6-574P-201ENST00000384265 107 ntBASIC4.32□□□□□ -1.72
COL6A1P12109 MIR490-201ENST00000384865 128 ntBASIC4.32□□□□□ -1.72
COL6A1P12109 HIST1H2APS3-201ENST00000403259 134 ntBASIC4.32□□□□□ -1.72
COL6A1P12109 AL391417.1-201ENST00000404100 426 ntBASIC4.32□□□□□ -1.72
COL6A1P12109 Y_RNA.605-201ENST00000410577 105 ntBASIC4.32□□□□□ -1.72
COL6A1P12109 ATG3P1-201ENST00000419507 911 ntBASIC4.32□□□□□ -1.72
COL6A1P12109 AC079780.1-201ENST00000428259 207 ntBASIC4.32□□□□□ -1.72
COL6A1P12109 RPL7P28-201ENST00000437739 740 ntBASIC4.32□□□□□ -1.72
COL6A1P12109 AL035666.1-201ENST00000446195 348 ntBASIC4.32□□□□□ -1.72
COL6A1P12109 RPS15AP27-201ENST00000449183 343 ntBASIC4.32□□□□□ -1.72
COL6A1P12109 MTCO3P10-201ENST00000455912 772 ntBASIC4.32□□□□□ -1.72
COL6A1P12109 AL133481.3-201ENST00000456546 333 ntTSL 3 BASIC4.32□□□□□ -1.72
COL6A1P12109 MGC32805-203ENST00000506053 652 ntTSL 3 BASIC4.32□□□□□ -1.72
COL6A1P12109 AC008526.1-201ENST00000509149 338 ntBASIC4.32□□□□□ -1.72
COL6A1P12109 AC093534.2-201ENST00000511418 420 ntTSL 3 BASIC4.32□□□□□ -1.72
COL6A1P12109 RNU6-685P-201ENST00000517088 95 ntBASIC4.32□□□□□ -1.72
COL6A1P12109 LINC02155-201ENST00000519215 407 ntTSL 5 BASIC4.32□□□□□ -1.72
COL6A1P12109 AC026894.1-202ENST00000533843 477 ntTSL 5 BASIC4.32□□□□□ -1.72
COL6A1P12109 AC007458.1-201ENST00000542812 373 ntBASIC4.32□□□□□ -1.72
COL6A1P12109 AL117187.1-201ENST00000555482 181 ntBASIC4.32□□□□□ -1.72
COL6A1P12109 AL355922.1-201ENST00000555624 337 ntTSL 3 BASIC4.32□□□□□ -1.72
COL6A1P12109 AC004817.2-201ENST00000561794 651 ntBASIC4.32□□□□□ -1.72
COL6A1P12109 AC006254.3-201ENST00000603353 884 ntBASIC4.32□□□□□ -1.72
COL6A1P12109 AC007938.3-201ENST00000604965 623 ntBASIC4.32□□□□□ -1.72
COL6A1P12109 AC087588.2-201ENST00000617667 426 ntBASIC4.32□□□□□ -1.72
COL6A1P12109 AC098657.3-201ENST00000620434 263 ntBASIC4.32□□□□□ -1.72
COL6A1P12109 AC243312.2-201ENST00000623340 601 ntBASIC4.32□□□□□ -1.72
COL6A1P12109 UBE3A-202ENST00000397954 2873 ntTSL 5 BASIC4.32□□□□□ -1.72
COL6A1P12109 DDX10P1-201ENST00000448545 1933 ntBASIC4.32□□□□□ -1.72
Retrieved 100 of 98,524 protein–RNA pairs in 93.3 ms