Protein–RNA interactions for Protein: Q9UK41

VPS28, Vacuolar protein sorting-associated protein 28 homolog, humanhuman

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28Q9UK41 AC104663.1-201ENST00000508555 557 ntTSL 2 BASIC3.12□□□□□ -1.91
VPS28Q9UK41 AL356057.1-201ENST00000533798 831 ntBASIC3.12□□□□□ -1.91
VPS28Q9UK41 AC113146.1-202ENST00000560259 433 ntTSL 5 BASIC3.12□□□□□ -1.91
VPS28Q9UK41 AC009145.3-201ENST00000567386 476 ntTSL 3 BASIC3.12□□□□□ -1.91
VPS28Q9UK41 AC015908.4-201ENST00000582334 575 ntTSL 4 BASIC3.12□□□□□ -1.91
VPS28Q9UK41 AC040904.1-201ENST00000590850 223 ntBASIC3.12□□□□□ -1.91
VPS28Q9UK41 AC073544.2-201ENST00000601155 540 ntBASIC3.12□□□□□ -1.91
VPS28Q9UK41 AC087752.4-201ENST00000605911 462 ntBASIC3.12□□□□□ -1.91
VPS28Q9UK41 MIR98-201ENST00000606724 119 ntBASIC3.12□□□□□ -1.91
VPS28Q9UK41 AL139286.2-201ENST00000606838 396 ntBASIC3.12□□□□□ -1.91
VPS28Q9UK41 AC109347.2-201ENST00000610220 349 ntBASIC3.12□□□□□ -1.91
VPS28Q9UK41 NPPA-AS1_3.1-201ENST00000617059 108 ntBASIC3.12□□□□□ -1.91
VPS28Q9UK41 U6.99-201ENST00000637524 83 ntBASIC3.12□□□□□ -1.91
VPS28Q9UK41 ADAM3A-203ENST00000461344 2157 ntBASIC3.12□□□□□ -1.91
VPS28Q9UK41 OR8K3-203ENST00000641662 2438 ntAPPRIS P1 BASIC3.12□□□□□ -1.91
VPS28Q9UK41 SHOC2-201ENST00000265277 3691 ntTSL 2 BASIC3.12□□□□□ -1.91
VPS28Q9UK41 RGS22-214ENST00000523287 4033 ntAPPRIS ALT2 TSL 2 BASIC3.11□□□□□ -1.91
VPS28Q9UK41 MIR23A-201ENST00000385245 73 ntBASIC3.11□□□□□ -1.91
VPS28Q9UK41 ERMN-204ENST00000409925 556 ntTSL 4 BASIC3.11□□□□□ -1.91
VPS28Q9UK41 RN7SKP123-201ENST00000410732 291 ntBASIC3.11□□□□□ -1.91
VPS28Q9UK41 AP000473.1-201ENST00000413645 550 ntTSL 3 BASIC3.11□□□□□ -1.91
VPS28Q9UK41 AC002456.1-201ENST00000415965 317 ntTSL 5 BASIC3.11□□□□□ -1.91
VPS28Q9UK41 LINC01780-201ENST00000420059 442 ntTSL 2 BASIC3.11□□□□□ -1.91
VPS28Q9UK41 RPL31P35-201ENST00000431058 377 ntBASIC3.11□□□□□ -1.91
VPS28Q9UK41 OR2B8P-201ENST00000432841 938 ntBASIC3.11□□□□□ -1.91
VPS28Q9UK41 LINC02195-201ENST00000443373 294 ntTSL 3 BASIC3.11□□□□□ -1.91
VPS28Q9UK41 AC095032.1-201ENST00000444810 527 ntTSL 3 BASIC3.11□□□□□ -1.91
VPS28Q9UK41 HMGN2P10-201ENST00000448085 265 ntBASIC3.11□□□□□ -1.91
VPS28Q9UK41 NANOGNBP1-201ENST00000448444 480 ntBASIC3.11□□□□□ -1.91
VPS28Q9UK41 AC073326.1-201ENST00000451832 557 ntTSL 3 BASIC3.11□□□□□ -1.91
VPS28Q9UK41 LINC01069-201ENST00000452933 546 ntTSL 5 BASIC3.11□□□□□ -1.91
VPS28Q9UK41 S100A11P2-201ENST00000467589 312 ntBASIC3.11□□□□□ -1.91
VPS28Q9UK41 RNU6-410P-201ENST00000517006 107 ntBASIC3.11□□□□□ -1.91
VPS28Q9UK41 AC090572.1-201ENST00000519251 160 ntBASIC3.11□□□□□ -1.91
VPS28Q9UK41 AC009902.1-201ENST00000519351 183 ntBASIC3.11□□□□□ -1.91
VPS28Q9UK41 AC106038.1-203ENST00000522132 362 ntTSL 2 BASIC3.11□□□□□ -1.91
VPS28Q9UK41 AP000873.5-201ENST00000533906 236 ntBASIC3.11□□□□□ -1.91
VPS28Q9UK41 HOMER1-205ENST00000535690 642 ntTSL 1 (best) BASIC3.11□□□□□ -1.91
VPS28Q9UK41 GLYCAM1-201ENST00000546596 285 ntBASIC3.11□□□□□ -1.91
VPS28Q9UK41 ADI1P3-201ENST00000549509 470 ntBASIC3.11□□□□□ -1.91
VPS28Q9UK41 G2E3-AS1-204ENST00000552511 402 ntTSL 2 BASIC3.11□□□□□ -1.91
VPS28Q9UK41 AL157871.3-201ENST00000557231 293 ntBASIC3.11□□□□□ -1.91
VPS28Q9UK41 AC025271.3-201ENST00000563031 255 ntTSL 5 BASIC3.11□□□□□ -1.91
VPS28Q9UK41 AC024619.4-201ENST00000580924 316 ntBASIC3.11□□□□□ -1.91
VPS28Q9UK41 LINC01905-202ENST00000588139 459 ntTSL 3 BASIC3.11□□□□□ -1.91
VPS28Q9UK41 LINC00907-210ENST00000593316 847 ntTSL 3 BASIC3.11□□□□□ -1.91
VPS28Q9UK41 AC007938.3-201ENST00000604965 623 ntBASIC3.11□□□□□ -1.91
VPS28Q9UK41 AC012409.4-201ENST00000612923 249 ntBASIC3.11□□□□□ -1.91
VPS28Q9UK41 AF165147.1-201ENST00000433310 6103 ntTSL 2 BASIC3.11□□□□□ -1.91
VPS28Q9UK41 AC009487.2-201ENST00000420969 6821 ntBASIC3.1□□□□□ -1.91
VPS28Q9UK41 OXR1-205ENST00000442977 2956 ntTSL 2 BASIC3.1□□□□□ -1.91
VPS28Q9UK41 MINDY3-202ENST00000378036 2452 ntTSL 2 BASIC3.1□□□□□ -1.91
VPS28Q9UK41 SNORA4.3-201ENST00000365564 137 ntBASIC3.1□□□□□ -1.91
VPS28Q9UK41 FAM107B-204ENST00000378465 1052 ntAPPRIS P1 TSL 2 BASIC3.1□□□□□ -1.91
VPS28Q9UK41 OR51A4-201ENST00000380373 1002 ntAPPRIS P1 BASIC3.1□□□□□ -1.91
VPS28Q9UK41 SNORA24.1-201ENST00000384401 135 ntBASIC3.1□□□□□ -1.91
VPS28Q9UK41 AC114491.1-201ENST00000416095 246 ntBASIC3.1□□□□□ -1.91
VPS28Q9UK41 AL359195.1-201ENST00000416657 339 ntTSL 3 BASIC3.1□□□□□ -1.91
VPS28Q9UK41 RPL35AP12-201ENST00000425362 338 ntBASIC3.1□□□□□ -1.91
VPS28Q9UK41 AL731684.2-201ENST00000426839 333 ntTSL 5 BASIC3.1□□□□□ -1.91
VPS28Q9UK41 AL592466.1-201ENST00000428346 307 ntTSL 5 BASIC3.1□□□□□ -1.91
VPS28Q9UK41 LINC01724-201ENST00000430519 621 ntTSL 3 BASIC3.1□□□□□ -1.91
VPS28Q9UK41 INTS6L-AS1-201ENST00000430820 398 ntTSL 3 BASIC3.1□□□□□ -1.91
VPS28Q9UK41 KATNBL1P3-201ENST00000443475 909 ntBASIC3.1□□□□□ -1.91
VPS28Q9UK41 AC079781.2-201ENST00000446424 169 ntBASIC3.1□□□□□ -1.91
VPS28Q9UK41 AC004924.1-201ENST00000480160 781 ntBASIC3.1□□□□□ -1.91
VPS28Q9UK41 ARL2BPP4-201ENST00000506854 471 ntBASIC3.1□□□□□ -1.91
VPS28Q9UK41 AC098591.2-201ENST00000510152 315 ntBASIC3.1□□□□□ -1.91
VPS28Q9UK41 RNU6-56P-201ENST00000516986 93 ntBASIC3.1□□□□□ -1.91
VPS28Q9UK41 SNORA31.26-201ENST00000517250 137 ntBASIC3.1□□□□□ -1.91
VPS28Q9UK41 AF117829.1-203ENST00000520306 421 ntTSL 5 BASIC3.1□□□□□ -1.91
VPS28Q9UK41 AP003072.2-201ENST00000527756 676 ntBASIC3.1□□□□□ -1.91
VPS28Q9UK41 AP000462.2-203ENST00000540545 715 ntTSL 5 BASIC3.1□□□□□ -1.91
VPS28Q9UK41 AC008741.1-201ENST00000569456 510 ntTSL 3 BASIC3.1□□□□□ -1.91
VPS28Q9UK41 AC024270.4-201ENST00000570202 421 ntTSL 3 BASIC3.1□□□□□ -1.91
VPS28Q9UK41 MIR4782-201ENST00000577987 79 ntBASIC3.1□□□□□ -1.91
VPS28Q9UK41 MIR1273C-201ENST00000578669 77 ntBASIC3.1□□□□□ -1.91
VPS28Q9UK41 AC010620.1-201ENST00000601088 1102 ntBASIC3.1□□□□□ -1.91
VPS28Q9UK41 AL158032.1-201ENST00000605401 106 ntBASIC3.1□□□□□ -1.91
VPS28Q9UK41 C3orf49-203ENST00000616659 876 ntAPPRIS ALT2 TSL 5 BASIC3.1□□□□□ -1.91
VPS28Q9UK41 AC138649.3-201ENST00000622154 254 ntBASIC3.1□□□□□ -1.91
VPS28Q9UK41 SEC23A-215ENST00000625395 261 ntTSL 5 BASIC3.1□□□□□ -1.91
VPS28Q9UK41 MGAT4C-211ENST00000621808 2582 ntAPPRIS P1 TSL 1 (best) BASIC3.1□□□□□ -1.91
VPS28Q9UK41 AC000403.1-201ENST00000613696 3585 ntBASIC3.1□□□□□ -1.91
VPS28Q9UK41 BMP5-201ENST00000370830 3952 ntAPPRIS P1 TSL 1 (best) BASIC3.1□□□□□ -1.91
VPS28Q9UK41 NOX4-202ENST00000343727 3347 ntTSL 2 BASIC3.1□□□□□ -1.91
VPS28Q9UK41 AC010889.1-201ENST00000566193 2666 ntBASIC3.1□□□□□ -1.91
VPS28Q9UK41 SLC30A6-202ENST00000357055 4758 ntTSL 2 BASIC3.1□□□□□ -1.91
VPS28Q9UK41 SEPT7-205ENST00000432293 1362 ntTSL 1 (best) BASIC3.1□□□□□ -1.91
VPS28Q9UK41 MGAT4C-210ENST00000620241 3194 ntAPPRIS P1 TSL 2 BASIC3.1□□□□□ -1.91
VPS28Q9UK41 AC103710.2-202ENST00000641454 2853 ntBASIC3.1□□□□□ -1.91
VPS28Q9UK41 AL589740.1-207ENST00000607823 1962 ntTSL 5 BASIC3.09□□□□□ -1.91
VPS28Q9UK41 Y_RNA.33-201ENST00000362591 102 ntBASIC3.09□□□□□ -1.91
VPS28Q9UK41 RNU6-395P-201ENST00000365662 106 ntBASIC3.09□□□□□ -1.91
VPS28Q9UK41 RPL5P18-201ENST00000406671 891 ntBASIC3.09□□□□□ -1.91
VPS28Q9UK41 RNU6-1025P-201ENST00000410629 104 ntBASIC3.09□□□□□ -1.91
VPS28Q9UK41 BMS1P22-201ENST00000414726 313 ntBASIC3.09□□□□□ -1.91
VPS28Q9UK41 GPR143P-201ENST00000434155 205 ntBASIC3.09□□□□□ -1.91
VPS28Q9UK41 USP9YP29-201ENST00000445112 563 ntBASIC3.09□□□□□ -1.91
VPS28Q9UK41 IGKV1OR-3-201ENST00000446944 348 ntBASIC3.09□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 127.8 ms