Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 AC068587.5-201ENST00000528506 175 ntBASIC2.84□□□□□ -1.95
PDLIM3Q53GG5 AC100763.1-201ENST00000532735 522 ntTSL 3 BASIC2.84□□□□□ -1.95
PDLIM3Q53GG5 G2E3-AS1-204ENST00000552511 402 ntTSL 2 BASIC2.84□□□□□ -1.95
PDLIM3Q53GG5 TRAV37-201ENST00000553906 342 ntBASIC2.84□□□□□ -1.95
PDLIM3Q53GG5 AP005530.1-201ENST00000572608 567 ntTSL 3 BASIC2.84□□□□□ -1.95
PDLIM3Q53GG5 RPL23AP78-201ENST00000599928 470 ntBASIC2.84□□□□□ -1.95
PDLIM3Q53GG5 AL391646.1-201ENST00000603860 190 ntBASIC2.84□□□□□ -1.95
PDLIM3Q53GG5 AC107294.3-201ENST00000609211 526 ntBASIC2.84□□□□□ -1.95
PDLIM3Q53GG5 AC087241.4-201ENST00000612441 480 ntBASIC2.84□□□□□ -1.95
PDLIM3Q53GG5 AL358154.1-201ENST00000627075 444 ntTSL 3 BASIC2.84□□□□□ -1.95
PDLIM3Q53GG5 AC068544.1-201ENST00000635064 248 ntTSL 5 BASIC2.84□□□□□ -1.95
PDLIM3Q53GG5 AL353651.2-201ENST00000635706 559 ntTSL 5 BASIC2.84□□□□□ -1.95
PDLIM3Q53GG5 ZGRF1-212ENST00000612287 2176 ntTSL 1 (best) BASIC2.84□□□□□ -1.96
PDLIM3Q53GG5 PIK3C2G-201ENST00000266497 4764 ntAPPRIS P1 TSL 1 (best) BASIC2.84□□□□□ -1.96
PDLIM3Q53GG5 ATP2C1-202ENST00000359644 3401 ntAPPRIS P3 TSL 1 (best) BASIC2.83□□□□□ -1.96
PDLIM3Q53GG5 TCF12-203ENST00000343827 3956 ntTSL 1 (best) BASIC2.83□□□□□ -1.96
PDLIM3Q53GG5 OR4G2P-201ENST00000328113 903 ntBASIC2.83□□□□□ -1.96
PDLIM3Q53GG5 Y_RNA.159-201ENST00000363674 87 ntBASIC2.83□□□□□ -1.96
PDLIM3Q53GG5 RNU6-14P-201ENST00000384630 106 ntBASIC2.83□□□□□ -1.96
PDLIM3Q53GG5 RNU6-780P-201ENST00000391030 104 ntBASIC2.83□□□□□ -1.96
PDLIM3Q53GG5 RNU6-192P-201ENST00000391253 100 ntBASIC2.83□□□□□ -1.96
PDLIM3Q53GG5 RPL5P18-201ENST00000406671 891 ntBASIC2.83□□□□□ -1.96
PDLIM3Q53GG5 Y_RNA.619-201ENST00000410951 90 ntBASIC2.83□□□□□ -1.96
PDLIM3Q53GG5 RNA5SP111-201ENST00000411386 101 ntBASIC2.83□□□□□ -1.96
PDLIM3Q53GG5 AC104462.1-201ENST00000414565 447 ntTSL 2 BASIC2.83□□□□□ -1.96
PDLIM3Q53GG5 Z85995.1-201ENST00000415547 335 ntBASIC2.83□□□□□ -1.96
PDLIM3Q53GG5 MTATP6P18-201ENST00000417994 673 ntBASIC2.83□□□□□ -1.96
PDLIM3Q53GG5 AC114808.2-201ENST00000428335 536 ntTSL 4 BASIC2.83□□□□□ -1.96
PDLIM3Q53GG5 AC104332.2-201ENST00000429959 156 ntBASIC2.83□□□□□ -1.96
PDLIM3Q53GG5 OR2B8P-201ENST00000432841 938 ntBASIC2.83□□□□□ -1.96
PDLIM3Q53GG5 HMGB3P12-201ENST00000438745 556 ntBASIC2.83□□□□□ -1.96
PDLIM3Q53GG5 AC004888.1-201ENST00000450480 547 ntTSL 2 BASIC2.83□□□□□ -1.96
PDLIM3Q53GG5 NDUFAF4P4-201ENST00000454883 502 ntBASIC2.83□□□□□ -1.96
PDLIM3Q53GG5 SRRM1P2-201ENST00000464531 1192 ntBASIC2.83□□□□□ -1.96
PDLIM3Q53GG5 RBBP4P6-201ENST00000508098 202 ntBASIC2.83□□□□□ -1.96
PDLIM3Q53GG5 RNU6-123P-201ENST00000516163 102 ntBASIC2.83□□□□□ -1.96
PDLIM3Q53GG5 RNA5SP291-201ENST00000517222 105 ntBASIC2.83□□□□□ -1.96
PDLIM3Q53GG5 AC087439.1-201ENST00000517920 398 ntTSL 3 BASIC2.83□□□□□ -1.96
PDLIM3Q53GG5 AF117829.1-204ENST00000519854 284 ntTSL 3 BASIC2.83□□□□□ -1.96
PDLIM3Q53GG5 APAF1-207ENST00000547743 651 ntTSL 3 BASIC2.83□□□□□ -1.96
PDLIM3Q53GG5 AP005057.1-201ENST00000583827 574 ntTSL 4 BASIC2.83□□□□□ -1.96
PDLIM3Q53GG5 AC012507.3-201ENST00000603556 477 ntBASIC2.83□□□□□ -1.96
PDLIM3Q53GG5 AL670379.4-201ENST00000605279 254 ntBASIC2.83□□□□□ -1.96
PDLIM3Q53GG5 AC004492.1-201ENST00000607036 742 ntBASIC2.83□□□□□ -1.96
PDLIM3Q53GG5 AL161629.2-201ENST00000615347 275 ntBASIC2.83□□□□□ -1.96
PDLIM3Q53GG5 MIR7112-201ENST00000616126 65 ntBASIC2.83□□□□□ -1.96
PDLIM3Q53GG5 AC139792.3-201ENST00000623525 224 ntBASIC2.83□□□□□ -1.96
PDLIM3Q53GG5 AC093648.1-201ENST00000623546 606 ntBASIC2.83□□□□□ -1.96
PDLIM3Q53GG5 AC009161.2-201ENST00000624626 138 ntBASIC2.83□□□□□ -1.96
PDLIM3Q53GG5 AC124864.2-201ENST00000624736 186 ntBASIC2.83□□□□□ -1.96
PDLIM3Q53GG5 AL157786.1-207ENST00000627771 695 ntBASIC2.83□□□□□ -1.96
PDLIM3Q53GG5 AC073476.4-201ENST00000628409 72 ntBASIC2.83□□□□□ -1.96
PDLIM3Q53GG5 AL109837.2-201ENST00000632608 295 ntTSL 3 BASIC2.83□□□□□ -1.96
PDLIM3Q53GG5 FOXP2-227ENST00000638397 240 ntTSL 5 BASIC2.83□□□□□ -1.96
PDLIM3Q53GG5 TECRL-202ENST00000507440 2876 ntTSL 5 BASIC2.83□□□□□ -1.96
PDLIM3Q53GG5 AC007785.2-201ENST00000598627 1916 ntBASIC2.83□□□□□ -1.96
PDLIM3Q53GG5 EVI2A-202ENST00000461237 1540 ntAPPRIS ALT2 TSL 4 BASIC2.83□□□□□ -1.96
PDLIM3Q53GG5 AL513302.2-201ENST00000562313 1842 ntBASIC2.82□□□□□ -1.96
PDLIM3Q53GG5 RNA5SP374-201ENST00000362939 125 ntBASIC2.82□□□□□ -1.96
PDLIM3Q53GG5 RNU6-1167P-201ENST00000363227 94 ntBASIC2.82□□□□□ -1.96
PDLIM3Q53GG5 RNU6-179P-201ENST00000363350 107 ntBASIC2.82□□□□□ -1.96
PDLIM3Q53GG5 RNU6-960P-201ENST00000364056 120 ntBASIC2.82□□□□□ -1.96
PDLIM3Q53GG5 RNU6-805P-201ENST00000365643 106 ntBASIC2.82□□□□□ -1.96
PDLIM3Q53GG5 RNU6-190P-201ENST00000384154 102 ntBASIC2.82□□□□□ -1.96
PDLIM3Q53GG5 CALM2P3-201ENST00000400429 449 ntBASIC2.82□□□□□ -1.96
PDLIM3Q53GG5 AC005162.2-201ENST00000411479 578 ntTSL 4 BASIC2.82□□□□□ -1.96
PDLIM3Q53GG5 AC245291.1-201ENST00000419501 328 ntBASIC2.82□□□□□ -1.96
PDLIM3Q53GG5 AL353193.1-201ENST00000421444 268 ntBASIC2.82□□□□□ -1.96
PDLIM3Q53GG5 AL645937.1-202ENST00000421799 937 ntBASIC2.82□□□□□ -1.96
PDLIM3Q53GG5 HMGN2P30-201ENST00000423237 256 ntBASIC2.82□□□□□ -1.96
PDLIM3Q53GG5 AC004870.4-201ENST00000424359 360 ntTSL 2 BASIC2.82□□□□□ -1.96
PDLIM3Q53GG5 RPL23AP82-202ENST00000427528 469 ntBASIC2.82□□□□□ -1.96
PDLIM3Q53GG5 AL592045.1-201ENST00000429867 352 ntBASIC2.82□□□□□ -1.96
PDLIM3Q53GG5 AL591212.2-201ENST00000433923 257 ntBASIC2.82□□□□□ -1.96
PDLIM3Q53GG5 AL080284.1-201ENST00000434493 442 ntTSL 2 BASIC2.82□□□□□ -1.96
PDLIM3Q53GG5 AL121890.1-201ENST00000435457 205 ntBASIC2.82□□□□□ -1.96
PDLIM3Q53GG5 AC025750.2-201ENST00000442609 450 ntBASIC2.82□□□□□ -1.96
PDLIM3Q53GG5 AL020998.1-201ENST00000444923 229 ntTSL 3 BASIC2.82□□□□□ -1.96
PDLIM3Q53GG5 AC092264.1-201ENST00000456002 713 ntTSL 5 BASIC2.82□□□□□ -1.96
PDLIM3Q53GG5 HMGN1P18-201ENST00000457642 277 ntBASIC2.82□□□□□ -1.96
PDLIM3Q53GG5 RPS27P29-201ENST00000463110 252 ntBASIC2.82□□□□□ -1.96
PDLIM3Q53GG5 CENPBD1P1-201ENST00000464061 469 ntBASIC2.82□□□□□ -1.96
PDLIM3Q53GG5 RPL27AP5-201ENST00000469428 449 ntBASIC2.82□□□□□ -1.96
PDLIM3Q53GG5 RN7SL442P-201ENST00000473804 320 ntBASIC2.82□□□□□ -1.96
PDLIM3Q53GG5 AC099520.1-202ENST00000503650 777 ntTSL 3 BASIC2.82□□□□□ -1.96
PDLIM3Q53GG5 LINC02100-201ENST00000512978 238 ntTSL 3 BASIC2.82□□□□□ -1.96
PDLIM3Q53GG5 RNU6-927P-201ENST00000516199 100 ntBASIC2.82□□□□□ -1.96
PDLIM3Q53GG5 Y_RNA.704-201ENST00000516851 102 ntBASIC2.82□□□□□ -1.96
PDLIM3Q53GG5 SKP1-203ENST00000517625 876 ntAPPRIS P4 TSL 3 BASIC2.82□□□□□ -1.96
PDLIM3Q53GG5 AC107934.2-201ENST00000518653 310 ntBASIC2.82□□□□□ -1.96
PDLIM3Q53GG5 LINC02350-201ENST00000544419 480 ntTSL 3 BASIC2.82□□□□□ -1.96
PDLIM3Q53GG5 LINC01146-208ENST00000557355 548 ntTSL 4 BASIC2.82□□□□□ -1.96
PDLIM3Q53GG5 AC098826.3-201ENST00000603823 466 ntBASIC2.82□□□□□ -1.96
PDLIM3Q53GG5 MACROD2-IT1-202ENST00000605675 575 ntTSL 5 BASIC2.82□□□□□ -1.96
PDLIM3Q53GG5 AL021997.1-201ENST00000605757 193 ntBASIC2.82□□□□□ -1.96
PDLIM3Q53GG5 AP001596.2-201ENST00000608410 312 ntBASIC2.82□□□□□ -1.96
PDLIM3Q53GG5 DPY19L1-208ENST00000612226 607 ntTSL 1 (best) BASIC2.82□□□□□ -1.96
PDLIM3Q53GG5 AL445584.2-201ENST00000614030 616 ntTSL 5 BASIC2.82□□□□□ -1.96
PDLIM3Q53GG5 AC025034.2-201ENST00000623264 286 ntBASIC2.82□□□□□ -1.96
PDLIM3Q53GG5 AC068631.1-221ENST00000626006 592 ntTSL 5 BASIC2.82□□□□□ -1.96
Retrieved 100 of 98,524 protein–RNA pairs in 374.4 ms