Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 RNU4-47P-201ENST00000410876 114 ntBASIC3.21□□□□□ -1.9
COL28A1Q2UY09 RNA5SP31-201ENST00000411144 127 ntBASIC3.21□□□□□ -1.9
COL28A1Q2UY09 AL031779.1-201ENST00000415663 330 ntBASIC3.21□□□□□ -1.9
COL28A1Q2UY09 MTCO1P21-201ENST00000416634 589 ntBASIC3.21□□□□□ -1.9
COL28A1Q2UY09 AC133106.1-201ENST00000419029 397 ntTSL 3 BASIC3.21□□□□□ -1.9
COL28A1Q2UY09 ELOCP14-201ENST00000428070 331 ntBASIC3.21□□□□□ -1.9
COL28A1Q2UY09 AC007919.1-201ENST00000429380 217 ntBASIC3.21□□□□□ -1.9
COL28A1Q2UY09 HMGN2P20-201ENST00000437531 273 ntBASIC3.21□□□□□ -1.9
COL28A1Q2UY09 RPL23AP22-201ENST00000437556 453 ntBASIC3.21□□□□□ -1.9
COL28A1Q2UY09 ELOCP7-201ENST00000439968 331 ntBASIC3.21□□□□□ -1.9
COL28A1Q2UY09 AC012445.1-201ENST00000442831 607 ntTSL 3 BASIC3.21□□□□□ -1.9
COL28A1Q2UY09 SFTA1P-203ENST00000446372 693 ntTSL 1 (best) BASIC3.21□□□□□ -1.9
COL28A1Q2UY09 AC005008.2-202ENST00000447776 439 ntTSL 3 BASIC3.21□□□□□ -1.9
COL28A1Q2UY09 AC013269.3-201ENST00000450486 444 ntTSL 3 BASIC3.21□□□□□ -1.9
COL28A1Q2UY09 AP000431.2-201ENST00000450653 790 ntTSL 2 BASIC3.21□□□□□ -1.9
COL28A1Q2UY09 FABP5P15-201ENST00000453566 214 ntBASIC3.21□□□□□ -1.9
COL28A1Q2UY09 RPS4XP2-201ENST00000458402 793 ntBASIC3.21□□□□□ -1.9
COL28A1Q2UY09 RNU7-182P-201ENST00000459009 62 ntBASIC3.21□□□□□ -1.9
COL28A1Q2UY09 RPL30P14-201ENST00000482744 348 ntBASIC3.21□□□□□ -1.9
COL28A1Q2UY09 LINC01323-201ENST00000486767 576 ntTSL 3 BASIC3.21□□□□□ -1.9
COL28A1Q2UY09 AC019235.1-201ENST00000503847 207 ntBASIC3.21□□□□□ -1.9
COL28A1Q2UY09 AC034226.1-201ENST00000506429 487 ntTSL 2 BASIC3.21□□□□□ -1.9
COL28A1Q2UY09 AC098591.2-201ENST00000510152 315 ntBASIC3.21□□□□□ -1.9
COL28A1Q2UY09 FCF1P8-201ENST00000510322 597 ntBASIC3.21□□□□□ -1.9
COL28A1Q2UY09 RNA5SP471-201ENST00000516971 106 ntBASIC3.21□□□□□ -1.9
COL28A1Q2UY09 AC022360.2-202ENST00000517308 407 ntTSL 3 BASIC3.21□□□□□ -1.9
COL28A1Q2UY09 AL512310.1-201ENST00000548639 172 ntBASIC3.21□□□□□ -1.9
COL28A1Q2UY09 TPRKBP2-201ENST00000565969 475 ntBASIC3.21□□□□□ -1.9
COL28A1Q2UY09 AC012186.2-201ENST00000569353 321 ntTSL 3 BASIC3.21□□□□□ -1.9
COL28A1Q2UY09 MIR4775-201ENST00000581168 75 ntBASIC3.21□□□□□ -1.9
COL28A1Q2UY09 AC004492.1-201ENST00000607036 742 ntBASIC3.21□□□□□ -1.9
COL28A1Q2UY09 AL359547.2-201ENST00000615810 418 ntBASIC3.21□□□□□ -1.9
COL28A1Q2UY09 AC025034.2-201ENST00000623264 286 ntBASIC3.21□□□□□ -1.9
COL28A1Q2UY09 SLC5A3-201ENST00000381151 11576 ntAPPRIS P1 TSL 1 (best) BASIC3.2□□□□□ -1.9
COL28A1Q2UY09 NBPF20-201ENST00000369373 18760 ntAPPRIS ALT2 TSL 5 BASIC3.2□□□□□ -1.9
COL28A1Q2UY09 NBEAL1-203ENST00000449802 10938 ntAPPRIS P1 TSL 5 BASIC3.2□□□□□ -1.9
COL28A1Q2UY09 ZGRF1-212ENST00000612287 2176 ntTSL 1 (best) BASIC3.2□□□□□ -1.9
COL28A1Q2UY09 ERBIN-201ENST00000284037 8647 ntTSL 1 (best) BASIC3.2□□□□□ -1.9
COL28A1Q2UY09 AC068647.1-201ENST00000489539 2265 ntBASIC3.2□□□□□ -1.9
COL28A1Q2UY09 RNU6-1035P-201ENST00000384477 107 ntBASIC3.2□□□□□ -1.9
COL28A1Q2UY09 Y_RNA.534-201ENST00000384599 112 ntBASIC3.2□□□□□ -1.9
COL28A1Q2UY09 AL365356.1-201ENST00000411512 736 ntTSL 3 BASIC3.2□□□□□ -1.9
COL28A1Q2UY09 AC239803.1-203ENST00000411978 452 ntTSL 2 BASIC3.2□□□□□ -1.9
COL28A1Q2UY09 UBE2V1P10-201ENST00000414685 269 ntBASIC3.2□□□□□ -1.9
COL28A1Q2UY09 AC080125.1-201ENST00000414888 684 ntBASIC3.2□□□□□ -1.9
COL28A1Q2UY09 AC063979.1-201ENST00000415539 377 ntBASIC3.2□□□□□ -1.9
COL28A1Q2UY09 AC073311.1-201ENST00000420146 505 ntTSL 5 BASIC3.2□□□□□ -1.9
COL28A1Q2UY09 AL353193.1-201ENST00000421444 268 ntBASIC3.2□□□□□ -1.9
COL28A1Q2UY09 AC035139.1-201ENST00000423256 273 ntTSL 3 BASIC3.2□□□□□ -1.9
COL28A1Q2UY09 AC012498.1-201ENST00000424037 437 ntBASIC3.2□□□□□ -1.9
COL28A1Q2UY09 C1orf195-201ENST00000424792 255 ntTSL 2 BASIC3.2□□□□□ -1.9
COL28A1Q2UY09 CALM2P2-201ENST00000428512 440 ntBASIC3.2□□□□□ -1.9
COL28A1Q2UY09 AL589986.2-201ENST00000429352 397 ntTSL 2 BASIC3.2□□□□□ -1.9
COL28A1Q2UY09 AL591704.1-201ENST00000432574 275 ntBASIC3.2□□□□□ -1.9
COL28A1Q2UY09 AL138799.4-201ENST00000443939 643 ntTSL 3 BASIC3.2□□□□□ -1.9
COL28A1Q2UY09 AC069549.1-201ENST00000451584 499 ntTSL 3 BASIC3.2□□□□□ -1.9
COL28A1Q2UY09 RPL7P5-201ENST00000471472 736 ntBASIC3.2□□□□□ -1.9
COL28A1Q2UY09 AC121764.1-201ENST00000472238 563 ntTSL 4 BASIC3.2□□□□□ -1.9
COL28A1Q2UY09 AC126182.1-201ENST00000478134 357 ntBASIC3.2□□□□□ -1.9
COL28A1Q2UY09 TRBV12-1-201ENST00000479785 344 ntBASIC3.2□□□□□ -1.9
COL28A1Q2UY09 UMAD1-204ENST00000482067 569 ntTSL 5 BASIC3.2□□□□□ -1.9
COL28A1Q2UY09 AC079943.1-201ENST00000491909 466 ntTSL 3 BASIC3.2□□□□□ -1.9
COL28A1Q2UY09 FCF1P3-201ENST00000496394 590 ntBASIC3.2□□□□□ -1.9
COL28A1Q2UY09 RNU6-685P-201ENST00000517088 95 ntBASIC3.2□□□□□ -1.9
COL28A1Q2UY09 RNA5SP290-201ENST00000517133 127 ntBASIC3.2□□□□□ -1.9
COL28A1Q2UY09 AC068657.1-201ENST00000520807 306 ntBASIC3.2□□□□□ -1.9
COL28A1Q2UY09 SPINK7-205ENST00000523535 299 ntTSL 2 BASIC3.2□□□□□ -1.9
COL28A1Q2UY09 AP000790.2-201ENST00000534388 522 ntTSL 3 BASIC3.2□□□□□ -1.9
COL28A1Q2UY09 HIGD1AP1-201ENST00000550979 275 ntBASIC3.2□□□□□ -1.9
COL28A1Q2UY09 AL133383.1-201ENST00000569292 901 ntTSL 1 (best) BASIC3.2□□□□□ -1.9
COL28A1Q2UY09 MIR3609-201ENST00000582661 80 ntBASIC3.2□□□□□ -1.9
COL28A1Q2UY09 MIR4769-201ENST00000584126 77 ntBASIC3.2□□□□□ -1.9
COL28A1Q2UY09 AP003465.2-201ENST00000602571 373 ntBASIC3.2□□□□□ -1.9
COL28A1Q2UY09 DEFB131E-202ENST00000602581 683 ntBASIC3.2□□□□□ -1.9
COL28A1Q2UY09 HSPE1P7-201ENST00000604681 321 ntBASIC3.2□□□□□ -1.9
COL28A1Q2UY09 AC022893.3-201ENST00000607665 437 ntBASIC3.2□□□□□ -1.9
COL28A1Q2UY09 AC012409.4-201ENST00000612923 249 ntBASIC3.2□□□□□ -1.9
COL28A1Q2UY09 SMAD5-AS1_2.1-201ENST00000617906 131 ntBASIC3.2□□□□□ -1.9
COL28A1Q2UY09 PLCE1P1-201ENST00000622094 305 ntBASIC3.2□□□□□ -1.9
COL28A1Q2UY09 CR381653.2-201ENST00000624041 768 ntBASIC3.2□□□□□ -1.9
COL28A1Q2UY09 SEPT14P19-203ENST00000633205 211 ntBASIC3.2□□□□□ -1.9
COL28A1Q2UY09 AC068544.1-201ENST00000635064 248 ntTSL 5 BASIC3.2□□□□□ -1.9
COL28A1Q2UY09 FOXP2-206ENST00000393491 6085 ntTSL 5 BASIC3.2□□□□□ -1.9
COL28A1Q2UY09 API5P2-201ENST00000397055 1498 ntBASIC3.2□□□□□ -1.9
COL28A1Q2UY09 AL161457.2-203ENST00000590767 2663 ntTSL 5 BASIC3.2□□□□□ -1.9
COL28A1Q2UY09 KNTC1-204ENST00000436959 2412 ntTSL 2 BASIC3.2□□□□□ -1.9
COL28A1Q2UY09 POSTN-209ENST00000541179 3214 ntAPPRIS ALT2 TSL 1 (best) BASIC3.19□□□□□ -1.9
COL28A1Q2UY09 HSFY2-201ENST00000304790 1444 ntAPPRIS P5 TSL 1 (best) BASIC3.19□□□□□ -1.9
COL28A1Q2UY09 HSFY1-201ENST00000307393 1444 ntAPPRIS P5 TSL 1 (best) BASIC3.19□□□□□ -1.9
COL28A1Q2UY09 SERPINI2-202ENST00000461846 1514 ntAPPRIS P1 TSL 1 (best) BASIC3.19□□□□□ -1.9
COL28A1Q2UY09 MCF2-202ENST00000370573 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC3.19□□□□□ -1.9
COL28A1Q2UY09 RGPD3-202ENST00000409886 5594 ntAPPRIS P2 TSL 1 (best) BASIC3.19□□□□□ -1.9
COL28A1Q2UY09 TTN-204ENST00000360870 18218 ntTSL 5 BASIC3.19□□□□□ -1.9
COL28A1Q2UY09 MIR30E-201ENST00000362104 92 ntBASIC3.19□□□□□ -1.9
COL28A1Q2UY09 RNU4-82P-201ENST00000362443 140 ntBASIC3.19□□□□□ -1.9
COL28A1Q2UY09 LINC00862-202ENST00000367356 759 ntTSL 3 BASIC3.19□□□□□ -1.9
COL28A1Q2UY09 PTPRC-202ENST00000367364 1017 ntTSL 1 (best) BASIC3.19□□□□□ -1.9
COL28A1Q2UY09 MIR325-201ENST00000385260 98 ntBASIC3.19□□□□□ -1.9
COL28A1Q2UY09 CALM2P3-201ENST00000400429 449 ntBASIC3.19□□□□□ -1.9
COL28A1Q2UY09 NT5C3A-205ENST00000409467 1032 ntAPPRIS ALT1 TSL 5 BASIC3.19□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 129.6 ms