Protein–RNA interactions for Protein: P31249

HOXD3, Homeobox protein Hox-D3, humanhuman

Predicted RBP Predictions only

Length 432 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3P31249 S100A12-201ENST00000368737 518 ntAPPRIS P1 TSL 1 (best) BASIC3.06□□□□□ -1.92
HOXD3P31249 LZIC-201ENST00000377213 945 ntAPPRIS P1 TSL 1 (best) BASIC3.06□□□□□ -1.92
HOXD3P31249 MIR449B-201ENST00000384995 97 ntBASIC3.06□□□□□ -1.92
HOXD3P31249 MIR513A2-201ENST00000385249 127 ntBASIC3.06□□□□□ -1.92
HOXD3P31249 TRAV7-201ENST00000390429 337 ntAPPRIS P1 BASIC3.06□□□□□ -1.92
HOXD3P31249 TAS2R13-201ENST00000390677 1637 ntAPPRIS P1 BASIC3.06□□□□□ -1.92
HOXD3P31249 SNORA57.3-201ENST00000411095 141 ntBASIC3.06□□□□□ -1.92
HOXD3P31249 AC074085.1-201ENST00000413598 418 ntBASIC3.06□□□□□ -1.92
HOXD3P31249 AC080125.1-201ENST00000414888 684 ntBASIC3.06□□□□□ -1.92
HOXD3P31249 AC093578.1-201ENST00000415219 368 ntBASIC3.06□□□□□ -1.92
HOXD3P31249 RPLP0P7-201ENST00000416050 667 ntBASIC3.06□□□□□ -1.92
HOXD3P31249 MTCO2P12-201ENST00000427426 682 ntBASIC3.06□□□□□ -1.92
HOXD3P31249 AL591704.1-201ENST00000432574 275 ntBASIC3.06□□□□□ -1.92
HOXD3P31249 ZNF382-203ENST00000435416 3865 ntAPPRIS ALT1 TSL 1 (best) BASIC3.06□□□□□ -1.92
HOXD3P31249 RPL32P28-201ENST00000443577 397 ntBASIC3.06□□□□□ -1.92
HOXD3P31249 AL138921.2-201ENST00000443919 578 ntTSL 5 BASIC3.06□□□□□ -1.92
HOXD3P31249 AL360271.2-201ENST00000447710 161 ntBASIC3.06□□□□□ -1.92
HOXD3P31249 TH2LCRR-203ENST00000457489 439 ntTSL 3 BASIC3.06□□□□□ -1.92
HOXD3P31249 MTCO1P29-201ENST00000496868 288 ntBASIC3.06□□□□□ -1.92
HOXD3P31249 MTND5P5-201ENST00000503764 376 ntBASIC3.06□□□□□ -1.92
HOXD3P31249 KLRA1P-202ENST00000510134 1410 ntTSL 5 BASIC3.06□□□□□ -1.92
HOXD3P31249 AC025475.1-201ENST00000512939 487 ntTSL 3 BASIC3.06□□□□□ -1.92
HOXD3P31249 AC104136.1-201ENST00000512969 394 ntBASIC3.06□□□□□ -1.92
HOXD3P31249 SCARNA15.2-201ENST00000516409 127 ntBASIC3.06□□□□□ -1.92
HOXD3P31249 RNU6-1332P-201ENST00000516666 104 ntBASIC3.06□□□□□ -1.92
HOXD3P31249 Y_RNA.718-201ENST00000517110 102 ntBASIC3.06□□□□□ -1.92
HOXD3P31249 AC103993.1-201ENST00000521500 1584 ntTSL 5 BASIC3.06□□□□□ -1.92
HOXD3P31249 SYF2P1-201ENST00000550658 413 ntBASIC3.06□□□□□ -1.92
HOXD3P31249 AL512791.1-201ENST00000555853 300 ntTSL 3 BASIC3.06□□□□□ -1.92
HOXD3P31249 MIR3941-201ENST00000582572 103 ntBASIC3.06□□□□□ -1.92
HOXD3P31249 AP001972.3-202ENST00000603012 375 ntTSL 3 BASIC3.06□□□□□ -1.92
HOXD3P31249 AC002044.1-201ENST00000606707 158 ntBASIC3.06□□□□□ -1.92
HOXD3P31249 TARID-205ENST00000607033 2960 ntTSL 1 (best) BASIC3.06□□□□□ -1.92
HOXD3P31249 RASSF8-215ENST00000611440 852 ntTSL 5 BASIC3.06□□□□□ -1.92
HOXD3P31249 UBE2E2-206ENST00000613545 282 ntTSL 5 BASIC3.06□□□□□ -1.92
HOXD3P31249 AL138726.1-201ENST00000614873 333 ntBASIC3.06□□□□□ -1.92
HOXD3P31249 AL355365.1-201ENST00000616480 294 ntBASIC3.06□□□□□ -1.92
HOXD3P31249 AL591424.2-201ENST00000617023 128 ntBASIC3.06□□□□□ -1.92
HOXD3P31249 AC012314.7-201ENST00000619693 93 ntBASIC3.06□□□□□ -1.92
HOXD3P31249 AC022418.1-201ENST00000624118 445 ntBASIC3.06□□□□□ -1.92
HOXD3P31249 AL512643.1-201ENST00000635735 524 ntBASIC3.06□□□□□ -1.92
HOXD3P31249 DOCK7-204ENST00000454575 6985 ntAPPRIS ALT2 TSL 1 (best) BASIC3.06□□□□□ -1.92
HOXD3P31249 WDR72-201ENST00000360509 5887 ntAPPRIS P2 TSL 1 (best) BASIC3.06□□□□□ -1.92
HOXD3P31249 MYNN-202ENST00000356716 2833 ntAPPRIS P1 TSL 1 (best) BASIC3.06□□□□□ -1.92
HOXD3P31249 CUL2-206ENST00000421317 2376 ntTSL 2 BASIC3.05□□□□□ -1.92
HOXD3P31249 GPRC6A-203ENST00000530250 2310 ntTSL 1 (best) BASIC3.05□□□□□ -1.92
HOXD3P31249 IFI16-208ENST00000448393 2245 ntAPPRIS ALT2 TSL 5 BASIC3.05□□□□□ -1.92
HOXD3P31249 DST-201ENST00000244364 16742 ntTSL 1 (best) BASIC3.05□□□□□ -1.92
HOXD3P31249 CAB39L-206ENST00000410043 1627 ntAPPRIS P1 TSL 1 (best) BASIC3.05□□□□□ -1.92
HOXD3P31249 CEP170-215ENST00000481987 3031 ntTSL 5 BASIC3.05□□□□□ -1.92
HOXD3P31249 CNOT4-202ENST00000356162 2594 ntTSL 5 BASIC3.05□□□□□ -1.92
HOXD3P31249 AC138393.1-203ENST00000327086 343 ntBASIC3.05□□□□□ -1.92
HOXD3P31249 RNA5SP399-201ENST00000364003 117 ntBASIC3.05□□□□□ -1.92
HOXD3P31249 SNORA73.2-201ENST00000364946 201 ntBASIC3.05□□□□□ -1.92
HOXD3P31249 KRTAP19-8-201ENST00000382822 318 ntAPPRIS P1 BASIC3.05□□□□□ -1.92
HOXD3P31249 RNU6-1227P-201ENST00000383981 107 ntBASIC3.05□□□□□ -1.92
HOXD3P31249 MIR7-3-201ENST00000384898 110 ntBASIC3.05□□□□□ -1.92
HOXD3P31249 IGLV5-37-201ENST00000390300 374 ntAPPRIS P1 BASIC3.05□□□□□ -1.92
HOXD3P31249 RN7SKP156-201ENST00000410308 342 ntBASIC3.05□□□□□ -1.92
HOXD3P31249 RAB9AP3-201ENST00000412737 573 ntBASIC3.05□□□□□ -1.92
HOXD3P31249 Z85995.1-201ENST00000415547 335 ntBASIC3.05□□□□□ -1.92
HOXD3P31249 AL139254.1-201ENST00000421114 376 ntTSL 3 BASIC3.05□□□□□ -1.92
HOXD3P31249 RPL27AP8-201ENST00000424277 446 ntBASIC3.05□□□□□ -1.92
HOXD3P31249 AL590632.1-201ENST00000424289 371 ntBASIC3.05□□□□□ -1.92
HOXD3P31249 AC236972.2-201ENST00000434979 310 ntBASIC3.05□□□□□ -1.92
HOXD3P31249 SNORA71B-202ENST00000439232 272 ntBASIC3.05□□□□□ -1.92
HOXD3P31249 NOTCH2P1-201ENST00000443481 624 ntBASIC3.05□□□□□ -1.92
HOXD3P31249 RANP8-201ENST00000444720 713 ntBASIC3.05□□□□□ -1.92
HOXD3P31249 RAB9AP1-201ENST00000449393 573 ntBASIC3.05□□□□□ -1.92
HOXD3P31249 AC010891.1-201ENST00000449963 448 ntTSL 2 BASIC3.05□□□□□ -1.92
HOXD3P31249 AC107399.1-201ENST00000451226 265 ntBASIC3.05□□□□□ -1.92
HOXD3P31249 MRPS31P2-201ENST00000451581 518 ntBASIC3.05□□□□□ -1.92
HOXD3P31249 HMGN2P16-201ENST00000456802 261 ntBASIC3.05□□□□□ -1.92
HOXD3P31249 AC087588.1-201ENST00000462203 316 ntBASIC3.05□□□□□ -1.92
HOXD3P31249 PPIAP15-201ENST00000479662 484 ntBASIC3.05□□□□□ -1.92
HOXD3P31249 RN7SL323P-201ENST00000494712 295 ntBASIC3.05□□□□□ -1.92
HOXD3P31249 RPS27P27-201ENST00000498779 255 ntBASIC3.05□□□□□ -1.92
HOXD3P31249 AC025554.1-201ENST00000505641 188 ntBASIC3.05□□□□□ -1.92
HOXD3P31249 AL359273.1-203ENST00000506295 602 ntTSL 1 (best) BASIC3.05□□□□□ -1.92
HOXD3P31249 AL359273.1-201ENST00000510918 627 ntBASIC3.05□□□□□ -1.92
HOXD3P31249 LINC01969-201ENST00000514468 455 ntTSL 3 BASIC3.05□□□□□ -1.92
HOXD3P31249 AC106744.2-202ENST00000515123 448 ntTSL 3 BASIC3.05□□□□□ -1.92
HOXD3P31249 RNA5SP179-201ENST00000517284 121 ntBASIC3.05□□□□□ -1.92
HOXD3P31249 AC100801.1-202ENST00000518266 371 ntTSL 3 BASIC3.05□□□□□ -1.92
HOXD3P31249 RNU6-323P-201ENST00000521915 107 ntBASIC3.05□□□□□ -1.92
HOXD3P31249 IGKV2D-19-201ENST00000523346 262 ntBASIC3.05□□□□□ -1.92
HOXD3P31249 APOOP3-201ENST00000536787 586 ntBASIC3.05□□□□□ -1.92
HOXD3P31249 AC073655.2-202ENST00000547927 401 ntTSL 3 BASIC3.05□□□□□ -1.92
HOXD3P31249 AL355102.1-201ENST00000555383 460 ntTSL 5 BASIC3.05□□□□□ -1.92
HOXD3P31249 AP005271.1-201ENST00000582470 412 ntTSL 3 BASIC3.05□□□□□ -1.92
HOXD3P31249 AC023043.2-201ENST00000589678 1026 ntBASIC3.05□□□□□ -1.92
HOXD3P31249 AL161798.1-201ENST00000604630 131 ntBASIC3.05□□□□□ -1.92
HOXD3P31249 AC091167.4-201ENST00000605079 184 ntBASIC3.05□□□□□ -1.92
HOXD3P31249 MACROD2-IT1-202ENST00000605675 575 ntTSL 5 BASIC3.05□□□□□ -1.92
HOXD3P31249 AC064836.2-201ENST00000609491 462 ntBASIC3.05□□□□□ -1.92
HOXD3P31249 AC105265.4-201ENST00000618391 306 ntTSL 5 BASIC3.05□□□□□ -1.92
HOXD3P31249 SNORD39.4-201ENST00000620099 78 ntBASIC3.05□□□□□ -1.92
HOXD3P31249 FP236240.3-201ENST00000623061 327 ntBASIC3.05□□□□□ -1.92
HOXD3P31249 TEX41-265ENST00000627785 704 ntTSL 5 BASIC3.05□□□□□ -1.92
HOXD3P31249 AL773545.4-201ENST00000637262 310 ntBASIC3.05□□□□□ -1.92
Retrieved 100 of 98,524 protein–RNA pairs in 126.7 ms