Protein–RNA interactions for Protein: A8TX70

COL6A5, Collagen alpha-5(VI) chain, humanhuman

Predictions only

Length 2,615 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A5A8TX70 AL050338.1-201ENST00000445585 786 ntTSL 3 BASIC0.58□□□□□ -2.32
COL6A5A8TX70 SNRPG-205ENST00000449935 428 ntTSL 1 (best) BASIC0.58□□□□□ -2.32
COL6A5A8TX70 RPL30P14-201ENST00000482744 348 ntBASIC0.58□□□□□ -2.32
COL6A5A8TX70 CFAP44-AS1-202ENST00000498480 686 ntTSL 3 BASIC0.58□□□□□ -2.32
COL6A5A8TX70 C5orf46-203ENST00000515291 573 ntAPPRIS ALT1 TSL 1 (best) BASIC0.58□□□□□ -2.32
COL6A5A8TX70 SNORD39.2-201ENST00000579995 76 ntBASIC0.58□□□□□ -2.32
COL6A5A8TX70 AL118508.4-201ENST00000624142 1176 ntBASIC0.58□□□□□ -2.32
COL6A5A8TX70 MIR6866-201ENST00000638146 69 ntBASIC0.58□□□□□ -2.32
COL6A5A8TX70 PTPN22-206ENST00000525799 2118 ntTSL 1 (best) BASIC0.57□□□□□ -2.32
COL6A5A8TX70 STATH-201ENST00000246895 598 ntAPPRIS P1 TSL 1 (best) BASIC0.57□□□□□ -2.32
COL6A5A8TX70 SNORA23-201ENST00000365128 182 ntBASIC0.57□□□□□ -2.32
COL6A5A8TX70 TRAJ11-201ENST00000390526 60 ntAPPRIS P1 BASIC0.57□□□□□ -2.32
COL6A5A8TX70 RNU6ATAC8P-201ENST00000408460 126 ntBASIC0.57□□□□□ -2.32
COL6A5A8TX70 AL360175.1-201ENST00000426547 285 ntTSL 5 BASIC0.57□□□□□ -2.32
COL6A5A8TX70 AC109466.1-211ENST00000519327 496 ntTSL 3 BASIC0.57□□□□□ -2.32
COL6A5A8TX70 AC023824.2-201ENST00000566185 400 ntBASIC0.57□□□□□ -2.32
COL6A5A8TX70 MIR4493-201ENST00000584016 73 ntBASIC0.57□□□□□ -2.32
COL6A5A8TX70 LINC02210-208ENST00000585118 546 ntTSL 1 (best) BASIC0.57□□□□□ -2.32
COL6A5A8TX70 LINC02070-201ENST00000460586 1321 ntTSL 1 (best) BASIC0.57□□□□□ -2.32
COL6A5A8TX70 JCHAIN-206ENST00000543780 1406 ntAPPRIS P1 TSL 1 (best) BASIC0.57□□□□□ -2.32
COL6A5A8TX70 ASB17-201ENST00000284142 1107 ntAPPRIS P1 TSL 1 (best) BASIC0.57□□□□□ -2.32
COL6A5A8TX70 RNU2-41P-201ENST00000410991 178 ntBASIC0.57□□□□□ -2.32
COL6A5A8TX70 NAALADL2-AS1-201ENST00000426315 804 ntTSL 5 BASIC0.57□□□□□ -2.32
COL6A5A8TX70 HSPE1P24-201ENST00000450782 238 ntBASIC0.57□□□□□ -2.32
COL6A5A8TX70 LINC01036-201ENST00000458683 858 ntTSL 3 BASIC0.57□□□□□ -2.32
COL6A5A8TX70 ERHP1-201ENST00000523006 310 ntBASIC0.57□□□□□ -2.32
COL6A5A8TX70 AL162311.1-201ENST00000553046 601 ntTSL 3 BASIC0.57□□□□□ -2.32
COL6A5A8TX70 BX546450.2-201ENST00000602419 435 ntTSL 5 BASIC0.57□□□□□ -2.32
COL6A5A8TX70 AL136363.1-201ENST00000605349 337 ntBASIC0.57□□□□□ -2.32
COL6A5A8TX70 AL050343.2-201ENST00000607338 280 ntBASIC0.57□□□□□ -2.32
COL6A5A8TX70 RNU6-50P-201ENST00000362356 103 ntBASIC0.56□□□□□ -2.32
COL6A5A8TX70 SNORA16B-201ENST00000364674 135 ntBASIC0.56□□□□□ -2.32
COL6A5A8TX70 SNORD26-201ENST00000384147 75 ntBASIC0.56□□□□□ -2.32
COL6A5A8TX70 NUP35P2-201ENST00000416748 943 ntBASIC0.56□□□□□ -2.32
COL6A5A8TX70 LAMTOR3P1-201ENST00000428620 370 ntBASIC0.56□□□□□ -2.32
COL6A5A8TX70 TH2LCRR-202ENST00000435042 472 ntTSL 5 BASIC0.56□□□□□ -2.32
COL6A5A8TX70 SNRPEP4-201ENST00000435815 279 ntBASIC0.56□□□□□ -2.32
COL6A5A8TX70 MTND5P14-201ENST00000441481 1267 ntBASIC0.56□□□□□ -2.32
COL6A5A8TX70 MTCO3P35-201ENST00000485582 781 ntBASIC0.56□□□□□ -2.32
COL6A5A8TX70 AC105914.1-201ENST00000511798 226 ntBASIC0.56□□□□□ -2.32
COL6A5A8TX70 SPIC-201ENST00000551346 1132 ntAPPRIS P1 TSL 1 (best) BASIC0.56□□□□□ -2.32
COL6A5A8TX70 LINC00933-203ENST00000559812 219 ntBASIC0.56□□□□□ -2.32
COL6A5A8TX70 LINC02165-201ENST00000563061 443 ntTSL 3 BASIC0.56□□□□□ -2.32
COL6A5A8TX70 LINC01195-201ENST00000570118 451 ntTSL 3 BASIC0.56□□□□□ -2.32
COL6A5A8TX70 AC023932.2-201ENST00000603176 175 ntBASIC0.56□□□□□ -2.32
COL6A5A8TX70 AC111000.4-202ENST00000505646 2648 ntTSL 2 BASIC0.56□□□□□ -2.32
COL6A5A8TX70 AP003170.3-201ENST00000399123 158 ntTSL 5 BASIC0.56□□□□□ -2.32
COL6A5A8TX70 AC002456.1-203ENST00000412669 449 ntTSL 3 BASIC0.56□□□□□ -2.32
COL6A5A8TX70 USP12PX-201ENST00000432383 1057 ntBASIC0.56□□□□□ -2.32
COL6A5A8TX70 AC002383.1-201ENST00000448260 671 ntTSL 5 BASIC0.56□□□□□ -2.32
COL6A5A8TX70 AC027575.1-201ENST00000481064 460 ntBASIC0.56□□□□□ -2.32
COL6A5A8TX70 AC008243.1-202ENST00000506527 481 ntTSL 5 BASIC0.56□□□□□ -2.32
COL6A5A8TX70 AC026780.1-201ENST00000512237 952 ntTSL 3 BASIC0.56□□□□□ -2.32
COL6A5A8TX70 SMIM18-201ENST00000517349 905 ntAPPRIS P1 TSL 2 BASIC0.56□□□□□ -2.32
COL6A5A8TX70 LRRTM2-203ENST00000521094 1182 ntTSL 1 (best) BASIC0.56□□□□□ -2.32
COL6A5A8TX70 AC021979.1-201ENST00000553822 336 ntTSL 3 BASIC0.56□□□□□ -2.32
COL6A5A8TX70 AL627230.6-201ENST00000611129 280 ntBASIC0.56□□□□□ -2.32
COL6A5A8TX70 MIR5087-201ENST00000635826 76 ntBASIC0.56□□□□□ -2.32
COL6A5A8TX70 MTND5P11-201ENST00000511037 1812 ntBASIC0.56□□□□□ -2.32
COL6A5A8TX70 CFHR3-201ENST00000367425 1645 ntAPPRIS P1 TSL 1 (best) BASIC0.56□□□□□ -2.32
COL6A5A8TX70 VN1R42P-201ENST00000424651 344 ntBASIC0.55□□□□□ -2.32
COL6A5A8TX70 RPS29P8-201ENST00000445109 171 ntBASIC0.55□□□□□ -2.32
COL6A5A8TX70 RNU6-229P-201ENST00000516614 102 ntBASIC0.55□□□□□ -2.32
COL6A5A8TX70 CENPUP1-201ENST00000526649 1202 ntBASIC0.55□□□□□ -2.32
COL6A5A8TX70 OR6C73P-201ENST00000546432 358 ntBASIC0.55□□□□□ -2.32
COL6A5A8TX70 AC096558.1-203ENST00000550516 574 ntTSL 3 BASIC0.55□□□□□ -2.32
COL6A5A8TX70 CLIC4P2-201ENST00000601934 717 ntBASIC0.55□□□□□ -2.32
COL6A5A8TX70 AL671511.2-201ENST00000611838 659 ntTSL 2 BASIC0.55□□□□□ -2.32
COL6A5A8TX70 AC130454.1-201ENST00000622948 401 ntBASIC0.55□□□□□ -2.32
COL6A5A8TX70 MIR126-201ENST00000362291 85 ntBASIC0.55□□□□□ -2.32
COL6A5A8TX70 RNY4P6-201ENST00000363667 96 ntBASIC0.55□□□□□ -2.32
COL6A5A8TX70 RNU6-19P-201ENST00000384718 107 ntBASIC0.55□□□□□ -2.32
COL6A5A8TX70 AC092648.1-201ENST00000425870 423 ntBASIC0.55□□□□□ -2.32
COL6A5A8TX70 AC005908.1-201ENST00000468701 347 ntBASIC0.55□□□□□ -2.32
COL6A5A8TX70 AC103853.2-201ENST00000519805 716 ntTSL 3 BASIC0.55□□□□□ -2.32
COL6A5A8TX70 AC136932.1-201ENST00000574771 208 ntBASIC0.55□□□□□ -2.32
COL6A5A8TX70 HMGN1P30-201ENST00000589286 268 ntBASIC0.55□□□□□ -2.32
COL6A5A8TX70 AC245128.3-201ENST00000594721 748 ntBASIC0.55□□□□□ -2.32
COL6A5A8TX70 AC003001.2-201ENST00000616294 831 ntBASIC0.55□□□□□ -2.32
COL6A5A8TX70 SNORA63.3-201ENST00000362682 132 ntBASIC0.54□□□□□ -2.32
COL6A5A8TX70 RNU4-32P-201ENST00000363404 141 ntBASIC0.54□□□□□ -2.32
COL6A5A8TX70 AP002784.2-201ENST00000397300 549 ntBASIC0.54□□□□□ -2.32
COL6A5A8TX70 AC016717.1-201ENST00000448918 286 ntBASIC0.54□□□□□ -2.32
COL6A5A8TX70 ITGA9-AS1-208ENST00000449586 726 ntTSL 3 BASIC0.54□□□□□ -2.32
COL6A5A8TX70 AC105343.1-201ENST00000505586 358 ntTSL 3 BASIC0.54□□□□□ -2.32
COL6A5A8TX70 OR5H4P-201ENST00000510851 923 ntBASIC0.54□□□□□ -2.32
COL6A5A8TX70 AC022690.1-201ENST00000526681 550 ntBASIC0.54□□□□□ -2.32
COL6A5A8TX70 AP002884.4-201ENST00000527589 594 ntTSL 3 BASIC0.54□□□□□ -2.32
COL6A5A8TX70 AP005639.2-201ENST00000527592 928 ntBASIC0.54□□□□□ -2.32
COL6A5A8TX70 AP003327.1-201ENST00000529684 127 ntBASIC0.54□□□□□ -2.32
COL6A5A8TX70 AC104819.3-201ENST00000603264 540 ntTSL 4 BASIC0.54□□□□□ -2.32
COL6A5A8TX70 AL357054.2-201ENST00000607644 423 ntTSL 5 BASIC0.54□□□□□ -2.32
COL6A5A8TX70 ZNF630-AS1-201ENST00000614448 397 ntTSL 3 BASIC0.54□□□□□ -2.32
COL6A5A8TX70 MIR6076-201ENST00000617521 113 ntBASIC0.54□□□□□ -2.32
COL6A5A8TX70 Y_RNA.28-201ENST00000362554 111 ntBASIC0.54□□□□□ -2.32
COL6A5A8TX70 Y_RNA.55-201ENST00000362797 102 ntBASIC0.54□□□□□ -2.32
COL6A5A8TX70 Y_RNA.410-201ENST00000383992 113 ntBASIC0.54□□□□□ -2.32
COL6A5A8TX70 RNU6-1181P-201ENST00000384191 106 ntBASIC0.54□□□□□ -2.32
COL6A5A8TX70 LINC01509-202ENST00000423523 408 ntTSL 3 BASIC0.54□□□□□ -2.32
COL6A5A8TX70 LINC01037-201ENST00000427337 424 ntTSL 5 BASIC0.54□□□□□ -2.32
Retrieved 100 of 98,524 protein–RNA pairs in 115.2 ms