Protein–RNA interactions for Protein: Q9Y5X1

SNX9, Sorting nexin-9, humanhuman

Predictions only

Length 595 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SNX9Q9Y5X1 AC069439.1-201ENST00000494739 167 ntBASIC3.32□□□□□ -1.88
SNX9Q9Y5X1 AC099499.1-201ENST00000505040 558 ntTSL 3 BASIC3.32□□□□□ -1.88
SNX9Q9Y5X1 AC091906.1-201ENST00000511310 391 ntTSL 2 BASIC3.32□□□□□ -1.88
SNX9Q9Y5X1 LEF1-218ENST00000512172 598 ntTSL 2 BASIC3.32□□□□□ -1.88
SNX9Q9Y5X1 LINC02061-201ENST00000514225 335 ntTSL 3 BASIC3.32□□□□□ -1.88
SNX9Q9Y5X1 AC008885.1-201ENST00000514930 301 ntBASIC3.32□□□□□ -1.88
SNX9Q9Y5X1 AC010280.1-201ENST00000515199 340 ntTSL 2 BASIC3.32□□□□□ -1.88
SNX9Q9Y5X1 RNA5SP217-201ENST00000515959 91 ntBASIC3.32□□□□□ -1.88
SNX9Q9Y5X1 SNORA31.1-201ENST00000515993 133 ntBASIC3.32□□□□□ -1.88
SNX9Q9Y5X1 SNORA31.5-201ENST00000516190 133 ntBASIC3.32□□□□□ -1.88
SNX9Q9Y5X1 RNU1-143P-201ENST00000516296 146 ntBASIC3.32□□□□□ -1.88
SNX9Q9Y5X1 SNORD27.1-201ENST00000516319 72 ntBASIC3.32□□□□□ -1.88
SNX9Q9Y5X1 SNORA64.4-201ENST00000516632 81 ntBASIC3.32□□□□□ -1.88
SNX9Q9Y5X1 NDST1-AS1-201ENST00000519040 368 ntTSL 2 BASIC3.32□□□□□ -1.88
SNX9Q9Y5X1 AP001804.3-201ENST00000525146 880 ntBASIC3.32□□□□□ -1.88
SNX9Q9Y5X1 DEUP1-203ENST00000527307 767 ntTSL 3 BASIC3.32□□□□□ -1.88
SNX9Q9Y5X1 AC128657.1-201ENST00000549459 145 ntBASIC3.32□□□□□ -1.88
SNX9Q9Y5X1 PCLAF-207ENST00000559519 749 ntTSL 2 BASIC3.32□□□□□ -1.88
SNX9Q9Y5X1 AP005205.1-201ENST00000563503 508 ntBASIC3.32□□□□□ -1.88
SNX9Q9Y5X1 MIR4325-201ENST00000583049 90 ntBASIC3.32□□□□□ -1.88
SNX9Q9Y5X1 Z84480.1-201ENST00000605131 311 ntBASIC3.32□□□□□ -1.88
SNX9Q9Y5X1 AL121992.2-201ENST00000606262 256 ntBASIC3.32□□□□□ -1.88
SNX9Q9Y5X1 AP002360.4-201ENST00000606980 481 ntBASIC3.32□□□□□ -1.88
SNX9Q9Y5X1 AC104458.1-201ENST00000608243 463 ntBASIC3.32□□□□□ -1.88
SNX9Q9Y5X1 U1.23-201ENST00000610293 146 ntBASIC3.32□□□□□ -1.88
SNX9Q9Y5X1 RNU1-68P-201ENST00000615382 146 ntBASIC3.32□□□□□ -1.88
SNX9Q9Y5X1 WFDC11-203ENST00000618797 561 ntAPPRIS P1 TSL 5 BASIC3.32□□□□□ -1.88
SNX9Q9Y5X1 U1.39-201ENST00000621562 146 ntBASIC3.32□□□□□ -1.88
SNX9Q9Y5X1 AC004520.1-201ENST00000608362 1413 ntBASIC3.32□□□□□ -1.88
SNX9Q9Y5X1 MTND5P7-201ENST00000413558 1798 ntBASIC3.32□□□□□ -1.88
SNX9Q9Y5X1 AC009812.4-201ENST00000569134 1805 ntBASIC3.32□□□□□ -1.88
SNX9Q9Y5X1 RICTOR-201ENST00000296782 7505 ntTSL 1 (best) BASIC3.32□□□□□ -1.88
SNX9Q9Y5X1 EYS-204ENST00000370621 10485 ntAPPRIS ALT2 TSL 1 (best) BASIC3.32□□□□□ -1.88
SNX9Q9Y5X1 FAM35CP-201ENST00000554755 2470 ntBASIC3.31□□□□□ -1.88
SNX9Q9Y5X1 CUL1P1-201ENST00000509510 2425 ntBASIC3.31□□□□□ -1.88
SNX9Q9Y5X1 HDX-201ENST00000297977 6200 ntAPPRIS P1 TSL 1 (best) BASIC3.31□□□□□ -1.88
SNX9Q9Y5X1 TAB3P1-202ENST00000452645 1634 ntBASIC3.31□□□□□ -1.88
SNX9Q9Y5X1 ZNF680P1-201ENST00000436625 1469 ntBASIC3.31□□□□□ -1.88
SNX9Q9Y5X1 HSPE1P11-201ENST00000339579 310 ntBASIC3.31□□□□□ -1.88
SNX9Q9Y5X1 Y_RNA.453-201ENST00000384223 109 ntBASIC3.31□□□□□ -1.88
SNX9Q9Y5X1 RNY3P14-201ENST00000384309 102 ntBASIC3.31□□□□□ -1.88
SNX9Q9Y5X1 SAR1AP2-201ENST00000392696 594 ntBASIC3.31□□□□□ -1.88
SNX9Q9Y5X1 RNU6-908P-201ENST00000410160 94 ntBASIC3.31□□□□□ -1.88
SNX9Q9Y5X1 RN7SKP123-201ENST00000410732 291 ntBASIC3.31□□□□□ -1.88
SNX9Q9Y5X1 AC104462.1-201ENST00000414565 447 ntTSL 2 BASIC3.31□□□□□ -1.88
SNX9Q9Y5X1 MTND4LP11-201ENST00000422184 280 ntBASIC3.31□□□□□ -1.88
SNX9Q9Y5X1 AC005062.1-206ENST00000424516 710 ntTSL 3 BASIC3.31□□□□□ -1.88
SNX9Q9Y5X1 MTCO1P20-201ENST00000425366 358 ntBASIC3.31□□□□□ -1.88
SNX9Q9Y5X1 ELOCP14-201ENST00000428070 331 ntBASIC3.31□□□□□ -1.88
SNX9Q9Y5X1 MTATP6P16-201ENST00000434543 526 ntBASIC3.31□□□□□ -1.88
SNX9Q9Y5X1 ELOCP7-201ENST00000439968 331 ntBASIC3.31□□□□□ -1.88
SNX9Q9Y5X1 AC018816.1-203ENST00000441894 338 ntTSL 3 BASIC3.31□□□□□ -1.88
SNX9Q9Y5X1 AC079781.2-201ENST00000446424 169 ntBASIC3.31□□□□□ -1.88
SNX9Q9Y5X1 MTND4P18-201ENST00000447010 465 ntBASIC3.31□□□□□ -1.88
SNX9Q9Y5X1 AC140076.1-201ENST00000449897 361 ntBASIC3.31□□□□□ -1.88
SNX9Q9Y5X1 AC004888.1-201ENST00000450480 547 ntTSL 2 BASIC3.31□□□□□ -1.88
SNX9Q9Y5X1 ZEB1-AS1-204ENST00000450834 576 ntTSL 3 BASIC3.31□□□□□ -1.88
SNX9Q9Y5X1 SNRPGP6-201ENST00000451124 220 ntBASIC3.31□□□□□ -1.88
SNX9Q9Y5X1 AC079382.1-201ENST00000493346 557 ntBASIC3.31□□□□□ -1.88
SNX9Q9Y5X1 RNU6-835P-201ENST00000516974 104 ntBASIC3.31□□□□□ -1.88
SNX9Q9Y5X1 AC009435.1-201ENST00000519555 574 ntTSL 4 BASIC3.31□□□□□ -1.88
SNX9Q9Y5X1 PIGY-201ENST00000527353 217 ntAPPRIS P1 BASIC3.31□□□□□ -1.88
SNX9Q9Y5X1 AC011979.2-201ENST00000527568 352 ntBASIC3.31□□□□□ -1.88
SNX9Q9Y5X1 TIMM9-207ENST00000555930 448 ntTSL 3 BASIC3.31□□□□□ -1.88
SNX9Q9Y5X1 AF001550.1-201ENST00000572747 573 ntTSL 4 BASIC3.31□□□□□ -1.88
SNX9Q9Y5X1 AC006504.3-201ENST00000586818 523 ntBASIC3.31□□□□□ -1.88
SNX9Q9Y5X1 LINC01905-202ENST00000588139 459 ntTSL 3 BASIC3.31□□□□□ -1.88
SNX9Q9Y5X1 AL022099.1-201ENST00000604551 712 ntBASIC3.31□□□□□ -1.88
SNX9Q9Y5X1 AC009570.1-201ENST00000609599 745 ntBASIC3.31□□□□□ -1.88
SNX9Q9Y5X1 EFCAB5-213ENST00000638539 168 ntTSL 5 BASIC3.31□□□□□ -1.88
SNX9Q9Y5X1 AC008505.1-204ENST00000637363 2714 ntTSL 5 BASIC3.31□□□□□ -1.88
SNX9Q9Y5X1 AC008264.2-201ENST00000610193 3731 ntBASIC3.31□□□□□ -1.88
SNX9Q9Y5X1 AC004972.1-201ENST00000623934 2209 ntBASIC3.31□□□□□ -1.88
SNX9Q9Y5X1 DDX10P1-201ENST00000448545 1933 ntBASIC3.31□□□□□ -1.88
SNX9Q9Y5X1 CCDC82-201ENST00000278520 2941 ntAPPRIS P2 TSL 5 BASIC3.3□□□□□ -1.88
SNX9Q9Y5X1 ZNF705G-201ENST00000400156 3644 ntAPPRIS P1 TSL 2 BASIC3.3□□□□□ -1.88
SNX9Q9Y5X1 MUC7-203ENST00000456088 2479 ntAPPRIS P2 TSL 4 BASIC3.3□□□□□ -1.88
SNX9Q9Y5X1 ZMYM2-203ENST00000382874 10139 ntAPPRIS P1 TSL 1 (best) BASIC3.3□□□□□ -1.88
SNX9Q9Y5X1 Y_RNA.89-201ENST00000363031 102 ntBASIC3.3□□□□□ -1.88
SNX9Q9Y5X1 SNORD56.3-201ENST00000363507 71 ntBASIC3.3□□□□□ -1.88
SNX9Q9Y5X1 RNU6-534P-201ENST00000364877 106 ntBASIC3.3□□□□□ -1.88
SNX9Q9Y5X1 Y_RNA.367-201ENST00000365544 101 ntBASIC3.3□□□□□ -1.88
SNX9Q9Y5X1 Y_RNA.481-201ENST00000384373 102 ntBASIC3.3□□□□□ -1.88
SNX9Q9Y5X1 Y_RNA.604-201ENST00000410574 102 ntBASIC3.3□□□□□ -1.88
SNX9Q9Y5X1 AL078645.1-201ENST00000414377 423 ntTSL 3 BASIC3.3□□□□□ -1.88
SNX9Q9Y5X1 RPL32P35-201ENST00000415214 394 ntBASIC3.3□□□□□ -1.88
SNX9Q9Y5X1 HSPE1P1-201ENST00000421494 318 ntBASIC3.3□□□□□ -1.88
SNX9Q9Y5X1 AL513365.2-201ENST00000423060 529 ntTSL 2 BASIC3.3□□□□□ -1.88
SNX9Q9Y5X1 C1orf195-201ENST00000424792 255 ntTSL 2 BASIC3.3□□□□□ -1.88
SNX9Q9Y5X1 AL606489.2-201ENST00000433886 234 ntBASIC3.3□□□□□ -1.88
SNX9Q9Y5X1 RPS20P5-201ENST00000434808 360 ntBASIC3.3□□□□□ -1.88
SNX9Q9Y5X1 RPL26P6-201ENST00000440913 438 ntBASIC3.3□□□□□ -1.88
SNX9Q9Y5X1 MTCO3P45-201ENST00000443036 613 ntBASIC3.3□□□□□ -1.88
SNX9Q9Y5X1 NFU1P2-201ENST00000448700 469 ntBASIC3.3□□□□□ -1.88
SNX9Q9Y5X1 AC027673.1-201ENST00000456245 405 ntBASIC3.3□□□□□ -1.88
SNX9Q9Y5X1 AL390961.3-201ENST00000458171 485 ntTSL 5 BASIC3.3□□□□□ -1.88
SNX9Q9Y5X1 RPL27AP5-201ENST00000469428 449 ntBASIC3.3□□□□□ -1.88
SNX9Q9Y5X1 AC083798.1-201ENST00000472671 131 ntBASIC3.3□□□□□ -1.88
SNX9Q9Y5X1 AC010631.1-201ENST00000474150 156 ntBASIC3.3□□□□□ -1.88
SNX9Q9Y5X1 AC092059.1-201ENST00000485347 429 ntTSL 3 BASIC3.3□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 79.8 ms